CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1734 & Codon = Gca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31734S1734AS2552AnonsynTcaGca18118117919-7921

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31734S1734ATcaGca181181All0.000035
ORF1ab/nsp31734S1734ATcaGca8787B.1.258.100.988636
ORF1ab/nsp31734S1734ATcaGca1212B.1.1.70.000011
ORF1ab/nsp31734S1734ATcaGca1111AY.470.000342
ORF1ab/nsp31734S1734ATcaGca1010AY.40.000016
ORF1ab/nsp31734S1734ATcaGca77B.1.20.000062
ORF1ab/nsp31734S1734ATcaGca77B.1.6370.000512
ORF1ab/nsp31734S1734ATcaGca66AY.4.20.00013
ORF1ab/nsp31734S1734ATcaGca66B.1.1770.000079
ORF1ab/nsp31734S1734ATcaGca55B.1.2210.000355
ORF1ab/nsp31734S1734ATcaGca44AY.1180.000251
ORF1ab/nsp31734S1734ATcaGca44AY.440.000024
ORF1ab/nsp31734S1734ATcaGca44B.10.000037
ORF1ab/nsp31734S1734ATcaGca33B.1.36.250.006623
ORF1ab/nsp31734S1734ATcaGca22AY.29.10.000441
ORF1ab/nsp31734S1734ATcaGca22B.1.1.3180.000604
ORF1ab/nsp31734S1734ATcaGca22B.1.2580.000133
ORF1ab/nsp31734S1734ATcaGca11AY.30.00001
ORF1ab/nsp31734S1734ATcaGca11AY.390.000025
ORF1ab/nsp31734S1734ATcaGca11AY.46.60.000072
ORF1ab/nsp31734S1734ATcaGca11AY.650.000533
ORF1ab/nsp31734S1734ATcaGca11B.1.214.20.0006
ORF1ab/nsp31734S1734ATcaGca11B.1.360.000146
ORF1ab/nsp31734S1734ATcaGca11B.1.810.021277
ORF1ab/nsp31734S1734ATcaGca11C.36.30.000567
ORF1ab/nsp31734S1734ATcaGca11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.