CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1734

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31734S1734PS2552PnonsynTcaCca112411230.999117919-7921
ORF1ab/nsp31734S1734PS2552PnonsynTcACcG112410.000889687919-7921
ORF1ab/nsp31734S1734SS2552SsyntcAtcG4674100.8779447919-7921
ORF1ab/nsp31734S1734SS2552SsyntcAtcC467320.06852257919-7921
ORF1ab/nsp31734S1734SS2552SsyntcAtcT467250.05353327919-7921
ORF1ab/nsp31734S1734AS2552AnonsynTcaGca18118117919-7921
ORF1ab/nsp31734S1734delS2552deldelTCA---838317919-7921
ORF1ab/nsp31734S1734LS2552LnonsyntCatTa23210.9130437919-7921
ORF1ab/nsp31734S1734LS2552LnonsynTCaCTa2320.08695657919-7921
ORF1ab/nsp31734S1734XS2552XnonsyntCatAa14130.9285717919-7921
ORF1ab/nsp31734S1734XS2552XnonsyntCatGa1410.07142867919-7921
ORF1ab/nsp31734S1734del1S2552del1deltcAtc-750.7142867919-7921
ORF1ab/nsp31734S1734del1S2552del1delTca-ca710.1428577919-7921
ORF1ab/nsp31734S1734del1S2552del1delTCA-NN710.1428577919-7921
ORF1ab/nsp31734S1734TS2552TnonsynTcaAca6617919-7921
ORF1ab/nsp31734S1734CS2552CnonsyntCAtGT2217919-7921
ORF1ab/nsp31734S1734VS2552VnonsynTCaGTa2217919-7921
ORF1ab/nsp31734S1734del2S2552del2deltCAt--2217919-7921
ORF1ab/nsp31734S1734FS2552FnonsyntCAtTC1117919-7921
ORF1ab/nsp31734S1734ES2552EnonsynTCaGAa1117919-7921
ORF1ab/nsp31734S1734WS2552WnonsyntCAtGG1117919-7921
ORF1ab/nsp31734S1734KS2552KnonsynTCAAAG1117919-7921

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31734S1734PTcaCca11231124All0.000215
ORF1ab/nsp31734S1734PTcACcG11124All0
ORF1ab/nsp31734S1734StcAtcG410467All0.000078
ORF1ab/nsp31734S1734StcAtcC32467All0.000006
ORF1ab/nsp31734S1734StcAtcT25467All0.000005
ORF1ab/nsp31734S1734PTcaCca351352B.1.1.70.000314
ORF1ab/nsp31734S1734PTcACcG1352B.1.1.70.000001
ORF1ab/nsp31734S1734PTcaCca334334AY.1030.002074
ORF1ab/nsp31734S1734ATcaGca181181All0.000035
ORF1ab/nsp31734S1734StcAtcG138152B.1.1.70.000124
ORF1ab/nsp31734S1734StcAtcT14152B.1.1.70.000013
ORF1ab/nsp31734S1734PTcaCca118118AY.40.000184
ORF1ab/nsp31734S1734ATcaGca8787B.1.258.100.988636
ORF1ab/nsp31734S1734delTCA---8383All0.000016
ORF1ab/nsp31734S1734PTcaCca6161B.1.1.1630.465649
ORF1ab/nsp31734S1734StcAtcG3939P.1.170.006309
ORF1ab/nsp31734S1734PTcaCca3535B.1.20.000308
ORF1ab/nsp31734S1734delTCA---3232B.1.1.70.000029
ORF1ab/nsp31734S1734PTcaCca2929AY.4.50.003117
ORF1ab/nsp31734S1734PTcaCca2828B.1.617.20.000105
ORF1ab/nsp31734S1734LtCatTa2123All0.000004
ORF1ab/nsp31734S1734LTCaCTa223All0
ORF1ab/nsp31734S1734StcAtcG2222B.10.000202
ORF1ab/nsp31734S1734StcAtcG2020AY.1030.000124
ORF1ab/nsp31734S1734PTcaCca2020B.1.10.000363
ORF1ab/nsp31734S1734StcAtcG1919AY.250.000114
ORF1ab/nsp31734S1734StcAtcG1919AY.440.000116
ORF1ab/nsp31734S1734StcAtcG1717AY.1180.001065
ORF1ab/nsp31734S1734XtCatAa1314All0.000002
ORF1ab/nsp31734S1734XtCatGa114All0
ORF1ab/nsp31734S1734PTcaCca1414AY.30.000139
ORF1ab/nsp31734S1734StcAtcG814B.1.20.00007
ORF1ab/nsp31734S1734StcAtcC614B.1.20.000053
ORF1ab/nsp31734S1734StcAtcG1213AY.30.000119
ORF1ab/nsp31734S1734StcAtcC113AY.30.00001
ORF1ab/nsp31734S1734ATcaGca1212B.1.1.70.000011
ORF1ab/nsp31734S1734ATcaGca1111AY.470.000342
ORF1ab/nsp31734S1734StcAtcG1010AY.260.000283
ORF1ab/nsp31734S1734StcAtcG1010AY.40.000016
ORF1ab/nsp31734S1734ATcaGca1010AY.40.000016
ORF1ab/nsp31734S1734StcAtcG810AY.430.000035
ORF1ab/nsp31734S1734StcAtcC210AY.430.000009
ORF1ab/nsp31734S1734PTcaCca1010B.10.000092
ORF1ab/nsp31734S1734PTcaCca99AY.1210.001218
ORF1ab/nsp31734S1734PTcaCca88AY.250.000048
ORF1ab/nsp31734S1734StcAtcC68AY.390.000148
ORF1ab/nsp31734S1734StcAtcG28AY.390.000049
ORF1ab/nsp31734S1734StcAtcC48B.1.10.000073
ORF1ab/nsp31734S1734StcAtcG48B.1.10.000073
ORF1ab/nsp31734S1734StcAtcG68B.1.617.20.000023
ORF1ab/nsp31734S1734StcAtcT28B.1.617.20.000008
ORF1ab/nsp31734S1734del1tcAtc-57All0.000001
ORF1ab/nsp31734S1734del1Tca-ca17All0
ORF1ab/nsp31734S1734del1TCA-NN17All0
ORF1ab/nsp31734S1734StcAtcG67AY.1020.000159
ORF1ab/nsp31734S1734StcAtcC17AY.1020.000027
ORF1ab/nsp31734S1734PTcaCca77AY.99.20.000645
ORF1ab/nsp31734S1734StcAtcG77B.1.177.520.012302
ORF1ab/nsp31734S1734ATcaGca77B.1.20.000062
ORF1ab/nsp31734S1734StcAtcC77B.1.3510.000208
ORF1ab/nsp31734S1734ATcaGca77B.1.6370.000512
ORF1ab/nsp31734S1734TTcaAca66All0.000001
ORF1ab/nsp31734S1734StcAtcG66AY.1040.011905
ORF1ab/nsp31734S1734StcAtcG66AY.330.000401
ORF1ab/nsp31734S1734ATcaGca66AY.4.20.00013
ORF1ab/nsp31734S1734ATcaGca66B.1.1770.000079
ORF1ab/nsp31734S1734PTcaCca66B.1.6370.000438
ORF1ab/nsp31734S1734PTcaCca55A.2.50.002495
ORF1ab/nsp31734S1734StcAtcG55AY.340.000485
ORF1ab/nsp31734S1734PTcaCca55AY.70.00098
ORF1ab/nsp31734S1734delTCA---55B.1.1770.000066
ORF1ab/nsp31734S1734ATcaGca55B.1.2210.000355
ORF1ab/nsp31734S1734StcAtcG55B.1.2430.000348
ORF1ab/nsp31734S1734delTCA---55B.1.617.20.000019
ORF1ab/nsp31734S1734PTcaCca55P.10.000079
ORF1ab/nsp31734S1734ATcaGca44AY.1180.000251
ORF1ab/nsp31734S1734PTcaCca44AY.1190.000141
ORF1ab/nsp31734S1734StcAtcG44AY.290.000063
ORF1ab/nsp31734S1734delTCA---44AY.40.000006
ORF1ab/nsp31734S1734PTcaCca44AY.430.000018
ORF1ab/nsp31734S1734ATcaGca44AY.440.000024
ORF1ab/nsp31734S1734PTcaCca44AY.440.000024
ORF1ab/nsp31734S1734PTcaCca44AY.470.000124
ORF1ab/nsp31734S1734ATcaGca44B.10.000037
ORF1ab/nsp31734S1734XtCatAa44B.10.000037
ORF1ab/nsp31734S1734XtCatAa34B.1.1.70.000003
ORF1ab/nsp31734S1734XtCatGa14B.1.1.70.000001
ORF1ab/nsp31734S1734PTcaCca44B.1.2400.000862
ORF1ab/nsp31734S1734StcAtcT44B.1.36.290.002069
ORF1ab/nsp31734S1734PTcaCca44B.1.5250.000453
ORF1ab/nsp31734S1734StcAtcT34R.10.00027
ORF1ab/nsp31734S1734StcAtcG14R.10.00009
ORF1ab/nsp31734S1734PTcaCca33AY.4.2.10.000447
ORF1ab/nsp31734S1734LtCatTa33B.10.000027
ORF1ab/nsp31734S1734delTCA---33B.10.000027
ORF1ab/nsp31734S1734ATcaGca33B.1.36.250.006623
ORF1ab/nsp31734S1734PTcaCca33B.1.5610.001191
ORF1ab/nsp31734S1734StcAtcG33P.10.000047
ORF1ab/nsp31734S1734VTCaGTa220.111111
ORF1ab/nsp31734S1734LTCaCTa220.111111
ORF1ab/nsp31734S1734CtCAtGT220.111111
ORF1ab/nsp31734S1734StcAtcG220.111111
ORF1ab/nsp31734S1734VTCaGTa22All0
ORF1ab/nsp31734S1734CtCAtGT22All0
ORF1ab/nsp31734S1734del2tCAt--22All0
ORF1ab/nsp31734S1734LtCatTa22AY.1000.000092
ORF1ab/nsp31734S1734PTcaCca22AY.1200.000074
ORF1ab/nsp31734S1734TTcaAca22AY.20.000712
ORF1ab/nsp31734S1734PTcaCca22AY.20.000712
ORF1ab/nsp31734S1734PTcaCca22AY.200.000078
ORF1ab/nsp31734S1734PTcaCca22AY.290.000032
ORF1ab/nsp31734S1734ATcaGca22AY.29.10.000441
ORF1ab/nsp31734S1734PTcaCca22AY.39.10.000079
ORF1ab/nsp31734S1734delTCA---22AY.46.20.001271
ORF1ab/nsp31734S1734delTCA---22AY.50.000041
ORF1ab/nsp31734S1734PTcaCca22AY.50.000041
ORF1ab/nsp31734S1734StcAtcG22AY.610.00021
ORF1ab/nsp31734S1734delTCA---22B.1.1.2360.013793
ORF1ab/nsp31734S1734ATcaGca22B.1.1.3180.000604
ORF1ab/nsp31734S1734LtCatTa22B.1.1.70.000002
ORF1ab/nsp31734S1734del1tcAtc-22B.1.1.70.000002
ORF1ab/nsp31734S1734StcAtcG22B.1.1600.000062
ORF1ab/nsp31734S1734StcAtcG22B.1.1770.000026
ORF1ab/nsp31734S1734PTcaCca22B.1.177.120.000303
ORF1ab/nsp31734S1734PTcaCca22B.1.177.860.000367
ORF1ab/nsp31734S1734LtCatTa22B.1.20.000018
ORF1ab/nsp31734S1734ATcaGca22B.1.2580.000133
ORF1ab/nsp31734S1734delTCA---22B.1.2580.000133
ORF1ab/nsp31734S1734StcAtcG22B.1.36.180.00084
ORF1ab/nsp31734S1734StcAtcG22B.1.5750.000607
ORF1ab/nsp31734S1734PTcaCca22B.1.6090.000959
ORF1ab/nsp31734S1734PTcaCca22D.20.00015
ORF1ab/nsp31734S1734TTcaAca11A0.000387
ORF1ab/nsp31734S1734delTCA---11A0.000387
ORF1ab/nsp31734S1734LtCatTa11A.20.000662
ORF1ab/nsp31734S1734LtCatTa11A.2.20.001689
ORF1ab/nsp31734S1734StcAtcG11A.2.40.003367
ORF1ab/nsp31734S1734FtCAtTC11All0
ORF1ab/nsp31734S1734WtCAtGG11All0
ORF1ab/nsp31734S1734ETCaGAa11All0
ORF1ab/nsp31734S1734KTCAAAG11All0
ORF1ab/nsp31734S1734TTcaAca11AY.10.000396
ORF1ab/nsp31734S1734PTcaCca11AY.1000.000046
ORF1ab/nsp31734S1734StcAtcG11AY.1000.000046
ORF1ab/nsp31734S1734TTcaAca11AY.1020.000027
ORF1ab/nsp31734S1734PTcaCca11AY.1020.000027
ORF1ab/nsp31734S1734LtCatTa11AY.1030.000006
ORF1ab/nsp31734S1734delTCA---11AY.1110.000183
ORF1ab/nsp31734S1734PTcaCca11AY.1170.000085
ORF1ab/nsp31734S1734StcAtcG11AY.1190.000035
ORF1ab/nsp31734S1734StcAtcT11AY.1200.000037
ORF1ab/nsp31734S1734StcAtcG11AY.1210.000135
ORF1ab/nsp31734S1734PTcaCca11AY.160.00038
ORF1ab/nsp31734S1734PTcaCca11AY.240.000431
ORF1ab/nsp31734S1734delTCA---11AY.250.000006
ORF1ab/nsp31734S1734LtCatTa11AY.250.000006
ORF1ab/nsp31734S1734ATcaGca11AY.30.00001
ORF1ab/nsp31734S1734StcAtcG11AY.300.000396
ORF1ab/nsp31734S1734delTCA---11AY.330.000067
ORF1ab/nsp31734S1734PTcaCca11AY.330.000067
ORF1ab/nsp31734S1734PTcaCca11AY.340.000097
ORF1ab/nsp31734S1734del1Tca-ca11AY.360.000148
ORF1ab/nsp31734S1734PTcaCca11AY.370.000316
ORF1ab/nsp31734S1734ATcaGca11AY.390.000025
ORF1ab/nsp31734S1734PTcaCca11AY.39.20.001541
ORF1ab/nsp31734S1734del1tcAtc-11AY.40.000002
ORF1ab/nsp31734S1734del2tCAt--11AY.40.000002
ORF1ab/nsp31734S1734LtCatTa11AY.40.000002
ORF1ab/nsp31734S1734StcAtcG11AY.4.20.000022
ORF1ab/nsp31734S1734delTCA---11AY.4.50.000107
ORF1ab/nsp31734S1734del1tcAtc-11AY.4.50.000107
ORF1ab/nsp31734S1734del2tCAt--11AY.4.50.000107
ORF1ab/nsp31734S1734PTcaCca11AY.420.00004
ORF1ab/nsp31734S1734LtCatTa11AY.420.00004
ORF1ab/nsp31734S1734delTCA---11AY.430.000004
ORF1ab/nsp31734S1734del1TCA-NN11AY.430.000004
ORF1ab/nsp31734S1734delTCA---11AY.440.000006
ORF1ab/nsp31734S1734XtCatAa11AY.46.20.000635
ORF1ab/nsp31734S1734ATcaGca11AY.46.60.000072
ORF1ab/nsp31734S1734LtCatTa11AY.46.60.000072
ORF1ab/nsp31734S1734StcAtcG11AY.470.000031
ORF1ab/nsp31734S1734StcAtcG11AY.480.000465
ORF1ab/nsp31734S1734PTcaCca11AY.5.30.000337
ORF1ab/nsp31734S1734PTcaCca11AY.5.40.000277
ORF1ab/nsp31734S1734StcAtcG11AY.540.000095
ORF1ab/nsp31734S1734PTcaCca11AY.570.000656
ORF1ab/nsp31734S1734delTCA---11AY.60.000041
ORF1ab/nsp31734S1734ATcaGca11AY.650.000533
ORF1ab/nsp31734S1734ETCaGAa11AY.670.000464
ORF1ab/nsp31734S1734StcAtcG11AY.7.10.000113
ORF1ab/nsp31734S1734StcAtcG11AY.750.000056
ORF1ab/nsp31734S1734delTCA---11AY.750.000056
ORF1ab/nsp31734S1734delTCA---11AY.840.000437
ORF1ab/nsp31734S1734delTCA---11AY.9.20.000037
ORF1ab/nsp31734S1734delTCA---11AY.990.001049
ORF1ab/nsp31734S1734delTCA---11AY.99.10.001553
ORF1ab/nsp31734S1734StcAtcC11AY.99.20.000092
ORF1ab/nsp31734S1734XtCatAa11B0.000128
ORF1ab/nsp31734S1734del1tcAtc-11B0.000128
ORF1ab/nsp31734S1734XtCatAa11B.1.10.000018
ORF1ab/nsp31734S1734LtCatTa11B.1.1.1640.005155
ORF1ab/nsp31734S1734PTcaCca11B.1.1.1640.005155
ORF1ab/nsp31734S1734LtCatTa11B.1.1.2260.005814
ORF1ab/nsp31734S1734PTcaCca11B.1.1.3060.000438
ORF1ab/nsp31734S1734StcAtcG11B.1.1.3430.020833
ORF1ab/nsp31734S1734StcAtcG11B.1.1.4340.000349
ORF1ab/nsp31734S1734delTCA---11B.1.1.460.004367
ORF1ab/nsp31734S1734PTcaCca11B.1.1.5170.006803
ORF1ab/nsp31734S1734FtCAtTC11B.1.1.70.000001
ORF1ab/nsp31734S1734WtCAtGG11B.1.1.70.000001
ORF1ab/nsp31734S1734TTcaAca11B.1.1.70.000001
ORF1ab/nsp31734S1734PTcaCca11B.1.1770.000013
ORF1ab/nsp31734S1734delTCA---11B.1.177.160.000664
ORF1ab/nsp31734S1734delTCA---11B.1.177.190.001431
ORF1ab/nsp31734S1734delTCA---11B.1.177.210.000076
ORF1ab/nsp31734S1734PTcaCca11B.1.177.310.011494
ORF1ab/nsp31734S1734delTCA---11B.1.177.40.000211
ORF1ab/nsp31734S1734delTCA---11B.1.177.570.000281
ORF1ab/nsp31734S1734delTCA---11B.1.177.60.000977
ORF1ab/nsp31734S1734StcAtcG11B.1.177.650.000665
ORF1ab/nsp31734S1734PTcaCca11B.1.177.770.000726
ORF1ab/nsp31734S1734delTCA---11B.1.177.830.001481
ORF1ab/nsp31734S1734LtCatTa11B.1.177.870.000728
ORF1ab/nsp31734S1734PTcaCca11B.1.177.870.000728
ORF1ab/nsp31734S1734XtCatAa11B.1.20.000009
ORF1ab/nsp31734S1734LtCatTa11B.1.2060.000816
ORF1ab/nsp31734S1734ATcaGca11B.1.214.20.0006
ORF1ab/nsp31734S1734StcAtcG11B.1.2150.009615
ORF1ab/nsp31734S1734StcAtcC11B.1.2180.005155
ORF1ab/nsp31734S1734StcAtcG11B.1.2580.000067
ORF1ab/nsp31734S1734delTCA---11B.1.258.100.011364
ORF1ab/nsp31734S1734StcAtcG11B.1.3320.003497
ORF1ab/nsp31734S1734StcAtcG11B.1.360.000146
ORF1ab/nsp31734S1734ATcaGca11B.1.360.000146
ORF1ab/nsp31734S1734delTCA---11B.1.36.170.000494
ORF1ab/nsp31734S1734PTcaCca11B.1.36.290.000517
ORF1ab/nsp31734S1734StcAtcG11B.1.3610.001289
ORF1ab/nsp31734S1734PTcaCca11B.1.3960.000706
ORF1ab/nsp31734S1734delTCA---11B.1.4090.000781
ORF1ab/nsp31734S1734PTcaCca11B.1.4290.000024
ORF1ab/nsp31734S1734PTcaCca11B.1.5820.000491
ORF1ab/nsp31734S1734StcAtcG11B.1.5960.000087
ORF1ab/nsp31734S1734XtCatAa11B.1.6090.000479
ORF1ab/nsp31734S1734PTcaCca11B.1.6120.002653
ORF1ab/nsp31734S1734StcAtcC11B.1.617.10.000129
ORF1ab/nsp31734S1734XtCatAa11B.1.617.20.000004
ORF1ab/nsp31734S1734delTCA---11B.1.617.30.002985
ORF1ab/nsp31734S1734PTcaCca11B.1.6210.000089
ORF1ab/nsp31734S1734StcAtcC11B.1.6210.000089
ORF1ab/nsp31734S1734ATcaGca11B.1.810.021277
ORF1ab/nsp31734S1734KTCAAAG11B.60.00091
ORF1ab/nsp31734S1734StcAtcT11C.350.000774
ORF1ab/nsp31734S1734ATcaGca11C.36.30.000567
ORF1ab/nsp31734S1734PTcaCca11C.370.000116
ORF1ab/nsp31734S1734PTcaCca11C.37.10.002618
ORF1ab/nsp31734S1734ATcaGca11P.10.000016
ORF1ab/nsp31734S1734delTCA---11P.10.000016
ORF1ab/nsp31734S1734StcAtcC11P.1.140.000048
ORF1ab/nsp31734S1734StcAtcG11Q.80.000165
ORF1ab/nsp31734S1734LtCatTa11Q.80.000165