CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1714

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31714T1714IT2532InonsynaCtaTt1656165617859-7861
ORF1ab/nsp31714T1714TT2532TsynacTacC2071470.7101457859-7861
ORF1ab/nsp31714T1714TT2532TsynacTacA207590.2850247859-7861
ORF1ab/nsp31714T1714TT2532TsynacTacG20710.004830927859-7861
ORF1ab/nsp31714T1714delT2532deldelACT---11611617859-7861
ORF1ab/nsp31714T1714AT2532AnonsynActGct838317859-7861
ORF1ab/nsp31714T1714NT2532NnonsynaCtaAt73720.9863017859-7861
ORF1ab/nsp31714T1714NT2532NnonsynaCTaAC7310.01369867859-7861
ORF1ab/nsp31714T1714PT2532PnonsynActCct27260.9629637859-7861
ORF1ab/nsp31714T1714PT2532PnonsynAcTCcC2710.0370377859-7861
ORF1ab/nsp31714T1714ST2532SnonsynActTct740.5714297859-7861
ORF1ab/nsp31714T1714ST2532SnonsynaCtaGt730.4285717859-7861
ORF1ab/nsp31714T1714VT2532VnonsynACtGTt3317859-7861
ORF1ab/nsp31714T1714HT2532HnonsynACtCAt320.6666677859-7861
ORF1ab/nsp31714T1714del1T2532del1delAct-ct320.6666677859-7861
ORF1ab/nsp31714T1714del1T2532del1delacTac-310.3333337859-7861
ORF1ab/nsp31714T1714HT2532HnonsynACTCAC310.3333337859-7861
ORF1ab/nsp31714T1714del2T2532del2delACt--t1117859-7861
ORF1ab/nsp31714T1714LT2532LnonsynACtCTt1117859-7861
ORF1ab/nsp31714T1714CT2532CnonsynACtTGt1117859-7861

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31714T1714IaCtaTt16561656All0.000317
ORF1ab/nsp31714T1714IaCtaTt672672B.1.1.70.000602
ORF1ab/nsp31714T1714IaCtaTt253253P.10.003986
ORF1ab/nsp31714T1714TacTacC147207All0.000028
ORF1ab/nsp31714T1714TacTacA59207All0.000011
ORF1ab/nsp31714T1714TacTacG1207All0
ORF1ab/nsp31714T1714IaCtaTt135135B.1.2430.009394
ORF1ab/nsp31714T1714delACT---116116All0.000022
ORF1ab/nsp31714T1714AActGct8383All0.000016
ORF1ab/nsp31714T1714NaCtaAt7273All0.000014
ORF1ab/nsp31714T1714NaCTaAC173All0
ORF1ab/nsp31714T1714IaCtaTt7272AY.40.000112
ORF1ab/nsp31714T1714TacTacC6262AY.46.50.012302
ORF1ab/nsp31714T1714IaCtaTt6161AY.260.001727
ORF1ab/nsp31714T1714IaCtaTt4848AY.440.000292
ORF1ab/nsp31714T1714delACT---4343B.1.1.70.000038
ORF1ab/nsp31714T1714IaCtaTt3333AY.1020.000875
ORF1ab/nsp31714T1714IaCtaTt3232AY.250.000192
ORF1ab/nsp31714T1714IaCtaTt2929B.1.5940.90625
ORF1ab/nsp31714T1714TacTacA2628AY.1030.000161
ORF1ab/nsp31714T1714TacTacC228AY.1030.000012
ORF1ab/nsp31714T1714IaCtaTt2828AZ.40.09396
ORF1ab/nsp31714T1714PActCct2627All0.000005
ORF1ab/nsp31714T1714PAcTCcC127All0
ORF1ab/nsp31714T1714TacTacC2727B.1.20.000238
ORF1ab/nsp31714T1714IaCtaTt2323B.1.617.20.000087
ORF1ab/nsp31714T1714AActGct2222AY.250.000132
ORF1ab/nsp31714T1714PActCct2222B.1.20.000194
ORF1ab/nsp31714T1714IaCtaTt2121B.1.6250.049412
ORF1ab/nsp31714T1714TacTacA1119B.1.617.20.000041
ORF1ab/nsp31714T1714TacTacC819B.1.617.20.00003
ORF1ab/nsp31714T1714IaCtaTt1818B.10.000165
ORF1ab/nsp31714T1714TacTacC1616B.1.5960.001394
ORF1ab/nsp31714T1714IaCtaTt1414AY.1030.000087
ORF1ab/nsp31714T1714TacTacA814AY.40.000012
ORF1ab/nsp31714T1714TacTacC614AY.40.000009
ORF1ab/nsp31714T1714IaCtaTt1414B.1.1.5190.000556
ORF1ab/nsp31714T1714NaCtaAt1414B.1.2210.000994
ORF1ab/nsp31714T1714IaCtaTt1313AY.46.60.000939
ORF1ab/nsp31714T1714NaCtaAt1313B.1.1.70.000012
ORF1ab/nsp31714T1714AActGct1010B.1.1.70.000009
ORF1ab/nsp31714T1714TacTacC610B.1.1.70.000005
ORF1ab/nsp31714T1714TacTacA410B.1.1.70.000004
ORF1ab/nsp31714T1714IaCtaTt99B.1.1.4660.078261
ORF1ab/nsp31714T1714IaCtaTt99B.1.20.000079
ORF1ab/nsp31714T1714IaCtaTt99B.1.5260.000212
ORF1ab/nsp31714T1714IaCtaTt88A.20.005295
ORF1ab/nsp31714T1714AActGct88B.1.617.20.00003
ORF1ab/nsp31714T1714SActTct47All0.000001
ORF1ab/nsp31714T1714SaCtaGt37All0.000001
ORF1ab/nsp31714T1714NaCtaAt77AY.160.002658
ORF1ab/nsp31714T1714delACT---77B.1.1770.000092
ORF1ab/nsp31714T1714AActGct66AY.1030.000037
ORF1ab/nsp31714T1714IaCtaTt66B.1.10.000109
ORF1ab/nsp31714T1714IaCtaTt66B.1.1.2840.000644
ORF1ab/nsp31714T1714AActGct66B.1.177.740.090909
ORF1ab/nsp31714T1714delACT---66B.1.617.20.000023
ORF1ab/nsp31714T1714IaCtaTt55AY.29.10.001103
ORF1ab/nsp31714T1714delACT---55AY.430.000022
ORF1ab/nsp31714T1714delACT---55B.10.000046
ORF1ab/nsp31714T1714IaCtaTt55B.1.177.350.003455
ORF1ab/nsp31714T1714IaCtaTt55B.1.4290.000118
ORF1ab/nsp31714T1714IaCtaTt55C.370.00058
ORF1ab/nsp31714T1714NaCtaAt440.222222
ORF1ab/nsp31714T1714AActGct44AY.1050.002572
ORF1ab/nsp31714T1714IaCtaTt44AY.390.000099
ORF1ab/nsp31714T1714AActGct44B.1.1.2040.012158
ORF1ab/nsp31714T1714IaCtaTt44B.1.1770.000053
ORF1ab/nsp31714T1714NaCtaAt44B.1.617.20.000015
ORF1ab/nsp31714T1714IaCtaTt44P.1.150.000929
ORF1ab/nsp31714T1714VACtGTt33All0.000001
ORF1ab/nsp31714T1714HACtCAt23All0
ORF1ab/nsp31714T1714del1Act-ct23All0
ORF1ab/nsp31714T1714HACTCAC13All0
ORF1ab/nsp31714T1714del1acTac-13All0
ORF1ab/nsp31714T1714NaCtaAt33AY.1030.000019
ORF1ab/nsp31714T1714NaCtaAt33AY.260.000085
ORF1ab/nsp31714T1714IaCtaTt33AY.30.00003
ORF1ab/nsp31714T1714IaCtaTt33AY.39.20.004622
ORF1ab/nsp31714T1714NaCtaAt33AY.4.20.000065
ORF1ab/nsp31714T1714IaCtaTt33AY.430.000013
ORF1ab/nsp31714T1714TacTacC33AY.440.000018
ORF1ab/nsp31714T1714IaCtaTt33AY.580.002722
ORF1ab/nsp31714T1714IaCtaTt33B.1.1.3180.000905
ORF1ab/nsp31714T1714del1Act-ct23B.1.1.70.000002
ORF1ab/nsp31714T1714SActTct23B.1.1.70.000002
ORF1ab/nsp31714T1714del1acTac-13B.1.1.70.000001
ORF1ab/nsp31714T1714SaCtaGt13B.1.1.70.000001
ORF1ab/nsp31714T1714delACT---33B.1.1600.000094
ORF1ab/nsp31714T1714IaCtaTt33B.1.2210.000213
ORF1ab/nsp31714T1714IaCtaTt33B.1.3510.000089
ORF1ab/nsp31714T1714AActGct33B.1.360.000438
ORF1ab/nsp31714T1714IaCtaTt33B.1.360.000438
ORF1ab/nsp31714T1714IaCtaTt33B.1.438.10.000322
ORF1ab/nsp31714T1714IaCtaTt33B.1.4460.06
ORF1ab/nsp31714T1714AActGct33B.1.5250.000339
ORF1ab/nsp31714T1714IaCtaTt33B.1.5880.00273
ORF1ab/nsp31714T1714IaCtaTt33C.320.069767
ORF1ab/nsp31714T1714VACtGTt220.111111
ORF1ab/nsp31714T1714TacTacA220.111111
ORF1ab/nsp31714T1714delACT---220.111111
ORF1ab/nsp31714T1714NaCtaAt22AY.1160.000574
ORF1ab/nsp31714T1714TacTacC22AY.1190.000071
ORF1ab/nsp31714T1714IaCtaTt22AY.1200.000074
ORF1ab/nsp31714T1714delACT---22AY.1210.000271
ORF1ab/nsp31714T1714IaCtaTt22AY.1210.000271
ORF1ab/nsp31714T1714TacTacC12AY.250.000006
ORF1ab/nsp31714T1714TacTacA12AY.250.000006
ORF1ab/nsp31714T1714IaCtaTt22AY.4.20.000043
ORF1ab/nsp31714T1714AActGct22AY.440.000012
ORF1ab/nsp31714T1714delACT---22AY.46.20.001271
ORF1ab/nsp31714T1714IaCtaTt22AY.46.40.000329
ORF1ab/nsp31714T1714SaCtaGt22AY.470.000062
ORF1ab/nsp31714T1714IaCtaTt22AY.50.000041
ORF1ab/nsp31714T1714IaCtaTt22AY.90.000135
ORF1ab/nsp31714T1714IaCtaTt22AY.980.000158
ORF1ab/nsp31714T1714NaCtaAt22B.10.000018
ORF1ab/nsp31714T1714TacTacA12B.10.000009
ORF1ab/nsp31714T1714TacTacC12B.10.000009
ORF1ab/nsp31714T1714TacTacC22B.1.10.000036
ORF1ab/nsp31714T1714PActCct12B.1.10.000018
ORF1ab/nsp31714T1714NaCTaAC12B.1.10.000018
ORF1ab/nsp31714T1714NaCtaAt12B.1.10.000018
ORF1ab/nsp31714T1714HACtCAt12B.1.10.000018
ORF1ab/nsp31714T1714PAcTCcC12B.1.10.000018
ORF1ab/nsp31714T1714HACTCAC12B.1.10.000018
ORF1ab/nsp31714T1714NaCtaAt22B.1.1.1590.009346
ORF1ab/nsp31714T1714IaCtaTt22B.1.1.2140.000111
ORF1ab/nsp31714T1714delACT---22B.1.1.2360.013793
ORF1ab/nsp31714T1714delACT---22B.1.177.570.000562
ORF1ab/nsp31714T1714AActGct22B.1.20.000018
ORF1ab/nsp31714T1714delACT---22B.1.2580.000133
ORF1ab/nsp31714T1714IaCtaTt22B.6.60.001778
ORF1ab/nsp31714T1714AActGct22P.10.000032
ORF1ab/nsp31714T1714IaCtaTt22P.1.140.000096
ORF1ab/nsp31714T1714TacTacC22P.1.150.000465
ORF1ab/nsp31714T1714delACT---22P.1.40.001953
ORF1ab/nsp31714T1714IaCtaTt110.055556
ORF1ab/nsp31714T1714PActCct110.055556
ORF1ab/nsp31714T1714HACtCAt110.055556
ORF1ab/nsp31714T1714SActTct110.055556
ORF1ab/nsp31714T1714delACT---11A0.000387
ORF1ab/nsp31714T1714IaCtaTt11A.10.000282
ORF1ab/nsp31714T1714TacTacC11A.2.40.003367
ORF1ab/nsp31714T1714IaCtaTt11A.2.50.000499
ORF1ab/nsp31714T1714IaCtaTt11A.23.10.000704
ORF1ab/nsp31714T1714LACtCTt11All0
ORF1ab/nsp31714T1714CACtTGt11All0
ORF1ab/nsp31714T1714del2ACt--t11All0
ORF1ab/nsp31714T1714TacTacC11AY.1000.000046
ORF1ab/nsp31714T1714AActGct11AY.1020.000027
ORF1ab/nsp31714T1714delACT---11AY.1020.000027
ORF1ab/nsp31714T1714delACT---11AY.1030.000006
ORF1ab/nsp31714T1714delACT---11AY.1110.000183
ORF1ab/nsp31714T1714IaCtaTt11AY.1170.000085
ORF1ab/nsp31714T1714IaCtaTt11AY.1180.000063
ORF1ab/nsp31714T1714NaCtaAt11AY.1190.000035
ORF1ab/nsp31714T1714delACT---11AY.1200.000037
ORF1ab/nsp31714T1714TacTacC11AY.1200.000037
ORF1ab/nsp31714T1714AActGct11AY.1210.000135
ORF1ab/nsp31714T1714IaCtaTt11AY.140.000088
ORF1ab/nsp31714T1714delACT---11AY.190.00114
ORF1ab/nsp31714T1714IaCtaTt11AY.200.000039
ORF1ab/nsp31714T1714NaCtaAt11AY.250.000006
ORF1ab/nsp31714T1714delACT---11AY.250.000006
ORF1ab/nsp31714T1714delACT---11AY.30.00001
ORF1ab/nsp31714T1714NaCtaAt11AY.30.00001
ORF1ab/nsp31714T1714TacTacC11AY.30.00001
ORF1ab/nsp31714T1714IaCtaTt11AY.300.000396
ORF1ab/nsp31714T1714delACT---11AY.330.000067
ORF1ab/nsp31714T1714IaCtaTt11AY.340.000097
ORF1ab/nsp31714T1714delACT---11AY.360.000148
ORF1ab/nsp31714T1714AActGct11AY.390.000025
ORF1ab/nsp31714T1714NaCtaAt11AY.40.000002
ORF1ab/nsp31714T1714delACT---11AY.40.000002
ORF1ab/nsp31714T1714AActGct11AY.40.000002
ORF1ab/nsp31714T1714IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp31714T1714IaCtaTt11AY.4.50.000107
ORF1ab/nsp31714T1714NaCtaAt11AY.430.000004
ORF1ab/nsp31714T1714delACT---11AY.440.000006
ORF1ab/nsp31714T1714del2ACt--t11AY.440.000006
ORF1ab/nsp31714T1714PActCct11AY.440.000006
ORF1ab/nsp31714T1714IaCtaTt11AY.450.000122
ORF1ab/nsp31714T1714IaCtaTt11AY.460.000104
ORF1ab/nsp31714T1714IaCtaTt11AY.46.20.000635
ORF1ab/nsp31714T1714TacTacC11AY.470.000031
ORF1ab/nsp31714T1714delACT---11AY.50.000021
ORF1ab/nsp31714T1714AActGct11AY.50.000021
ORF1ab/nsp31714T1714IaCtaTt11AY.550.000917
ORF1ab/nsp31714T1714IaCtaTt11AY.570.000656
ORF1ab/nsp31714T1714IaCtaTt11AY.590.00053
ORF1ab/nsp31714T1714TacTacC11AY.60.000041
ORF1ab/nsp31714T1714delACT---11AY.60.000041
ORF1ab/nsp31714T1714IaCtaTt11AY.60.000041
ORF1ab/nsp31714T1714IaCtaTt11AY.600.000938
ORF1ab/nsp31714T1714NaCtaAt11AY.650.000533
ORF1ab/nsp31714T1714TacTacC11AY.670.000464
ORF1ab/nsp31714T1714delACT---11AY.670.000464
ORF1ab/nsp31714T1714IaCtaTt11AY.740.000116
ORF1ab/nsp31714T1714delACT---11AY.75.10.00018
ORF1ab/nsp31714T1714delACT---11AY.810.001992
ORF1ab/nsp31714T1714delACT---11AY.840.000437
ORF1ab/nsp31714T1714delACT---11AY.90.000068
ORF1ab/nsp31714T1714delACT---11AY.9.20.000037
ORF1ab/nsp31714T1714IaCtaTt11AY.910.00073
ORF1ab/nsp31714T1714IaCtaTt11AY.920.000287
ORF1ab/nsp31714T1714IaCtaTt11AY.98.10.000048
ORF1ab/nsp31714T1714NaCtaAt11AY.98.10.000048
ORF1ab/nsp31714T1714delACT---11AY.990.001049
ORF1ab/nsp31714T1714delACT---11AY.99.10.001553
ORF1ab/nsp31714T1714IaCtaTt11AY.99.20.000092
ORF1ab/nsp31714T1714IaCtaTt11AZ.30.00152
ORF1ab/nsp31714T1714VACtGTt11B.1.10.000018
ORF1ab/nsp31714T1714LACtCTt11B.1.10.000018
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.1890.001513
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.2160.00089
ORF1ab/nsp31714T1714TacTacA11B.1.1.2250.007194
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.280.000311
ORF1ab/nsp31714T1714TacTacG11B.1.1.3060.000438
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.330.000421
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.3630.005988
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.370.000193
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.3890.006061
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.3970.002252
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.4340.000349
ORF1ab/nsp31714T1714IaCtaTt11B.1.1.440.00241
ORF1ab/nsp31714T1714delACT---11B.1.1.460.004367
ORF1ab/nsp31714T1714TacTacA11B.1.1.5190.00004
ORF1ab/nsp31714T1714delACT---11B.1.1.5190.00004
ORF1ab/nsp31714T1714NaCtaAt11B.1.1.5190.00004
ORF1ab/nsp31714T1714CACtTGt11B.1.1.70.000001
ORF1ab/nsp31714T1714TacTacA11B.1.1.950.019608
ORF1ab/nsp31714T1714IaCtaTt11B.1.110.30.000718
ORF1ab/nsp31714T1714TacTacA11B.1.1600.000031
ORF1ab/nsp31714T1714NaCtaAt11B.1.160.150.00495
ORF1ab/nsp31714T1714TacTacC11B.1.1770.000013
ORF1ab/nsp31714T1714NaCtaAt11B.1.1770.000013
ORF1ab/nsp31714T1714delACT---11B.1.177.210.000076
ORF1ab/nsp31714T1714delACT---11B.1.177.40.000211
ORF1ab/nsp31714T1714delACT---11B.1.177.60.000977
ORF1ab/nsp31714T1714IaCtaTt11B.1.177.650.000665
ORF1ab/nsp31714T1714delACT---11B.1.177.830.001481
ORF1ab/nsp31714T1714delACT---11B.1.20.000009
ORF1ab/nsp31714T1714NaCtaAt11B.1.20.000009
ORF1ab/nsp31714T1714TacTacC11B.1.2060.000816
ORF1ab/nsp31714T1714IaCtaTt11B.1.2130.014925
ORF1ab/nsp31714T1714TacTacA11B.1.2210.000071
ORF1ab/nsp31714T1714SActTct11B.1.2340.000132
ORF1ab/nsp31714T1714IaCtaTt11B.1.2400.000216
ORF1ab/nsp31714T1714delACT---11B.1.258.100.011364
ORF1ab/nsp31714T1714IaCtaTt11B.1.258.30.001675
ORF1ab/nsp31714T1714IaCtaTt11B.1.30.002618
ORF1ab/nsp31714T1714IaCtaTt11B.1.3110.000275
ORF1ab/nsp31714T1714NaCtaAt11B.1.3510.00003
ORF1ab/nsp31714T1714TacTacA11B.1.3510.00003
ORF1ab/nsp31714T1714AActGct11B.1.3510.00003
ORF1ab/nsp31714T1714delACT---11B.1.360.000146
ORF1ab/nsp31714T1714IaCtaTt11B.1.36.180.00042
ORF1ab/nsp31714T1714IaCtaTt11B.1.3620.001541
ORF1ab/nsp31714T1714delACT---11B.1.4090.000781
ORF1ab/nsp31714T1714NaCtaAt11B.1.4290.000024
ORF1ab/nsp31714T1714IaCtaTt11B.1.466.20.000391
ORF1ab/nsp31714T1714AActGct11B.1.5400.009709
ORF1ab/nsp31714T1714AActGct11B.1.5900.004545
ORF1ab/nsp31714T1714PActCct11B.1.5960.000087
ORF1ab/nsp31714T1714IaCtaTt11B.1.617.10.000129
ORF1ab/nsp31714T1714IaCtaTt11B.1.6210.000089
ORF1ab/nsp31714T1714IaCtaTt11B.1.6370.000073
ORF1ab/nsp31714T1714AActGct11B.400.000364
ORF1ab/nsp31714T1714AActGct11C.370.000116
ORF1ab/nsp31714T1714IaCtaTt11D.20.000075
ORF1ab/nsp31714T1714delACT---11P.10.000016
ORF1ab/nsp31714T1714IaCtaTt11P.1.120.000484
ORF1ab/nsp31714T1714NaCtaAt11P.1.140.000048
ORF1ab/nsp31714T1714IaCtaTt11P.1.170.000162
ORF1ab/nsp31714T1714IaCtaTt11Q.20.000613
ORF1ab/nsp31714T1714IaCtaTt11Q.80.000165
ORF1ab/nsp31714T1714AActGct11R.10.00009