CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1714 | T1714I | T2532I | nonsyn | aCt | aTt | 1656 | 1656 | 1 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714T | T2532T | syn | acT | acC | 207 | 147 | 0.710145 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714T | T2532T | syn | acT | acA | 207 | 59 | 0.285024 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714T | T2532T | syn | acT | acG | 207 | 1 | 0.00483092 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714del | T2532del | del | ACT | --- | 116 | 116 | 1 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714A | T2532A | nonsyn | Act | Gct | 83 | 83 | 1 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714N | T2532N | nonsyn | aCt | aAt | 73 | 72 | 0.986301 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714N | T2532N | nonsyn | aCT | aAC | 73 | 1 | 0.0136986 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714P | T2532P | nonsyn | Act | Cct | 27 | 26 | 0.962963 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714P | T2532P | nonsyn | AcT | CcC | 27 | 1 | 0.037037 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714S | T2532S | nonsyn | Act | Tct | 7 | 4 | 0.571429 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714S | T2532S | nonsyn | aCt | aGt | 7 | 3 | 0.428571 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714V | T2532V | nonsyn | ACt | GTt | 3 | 3 | 1 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714H | T2532H | nonsyn | ACt | CAt | 3 | 2 | 0.666667 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714del1 | T2532del1 | del | Act | -ct | 3 | 2 | 0.666667 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714del1 | T2532del1 | del | acT | ac- | 3 | 1 | 0.333333 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714H | T2532H | nonsyn | ACT | CAC | 3 | 1 | 0.333333 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714del2 | T2532del2 | del | ACt | --t | 1 | 1 | 1 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714L | T2532L | nonsyn | ACt | CTt | 1 | 1 | 1 | 7859-7861 |
ORF1ab/nsp3 | 1714 | T1714C | T2532C | nonsyn | ACt | TGt | 1 | 1 | 1 | 7859-7861 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1656 | 1656 | All | 0.000317 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 672 | 672 | B.1.1.7 | 0.000602 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 253 | 253 | P.1 | 0.003986 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 147 | 207 | All | 0.000028 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 59 | 207 | All | 0.000011 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acG | 1 | 207 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 135 | 135 | B.1.243 | 0.009394 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 116 | 116 | All | 0.000022 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 83 | 83 | All | 0.000016 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 72 | 73 | All | 0.000014 |
ORF1ab/nsp3 | 1714 | T1714N | aCT | aAC | 1 | 73 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 72 | 72 | AY.4 | 0.000112 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 62 | 62 | AY.46.5 | 0.012302 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 61 | 61 | AY.26 | 0.001727 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 48 | 48 | AY.44 | 0.000292 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 43 | 43 | B.1.1.7 | 0.000038 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 33 | 33 | AY.102 | 0.000875 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 29 | 29 | B.1.594 | 0.90625 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 26 | 28 | AY.103 | 0.000161 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 2 | 28 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 28 | 28 | AZ.4 | 0.09396 |
ORF1ab/nsp3 | 1714 | T1714P | Act | Cct | 26 | 27 | All | 0.000005 |
ORF1ab/nsp3 | 1714 | T1714P | AcT | CcC | 1 | 27 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 27 | 27 | B.1.2 | 0.000238 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 22 | 22 | AY.25 | 0.000132 |
ORF1ab/nsp3 | 1714 | T1714P | Act | Cct | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 21 | 21 | B.1.625 | 0.049412 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 11 | 19 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 8 | 19 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 16 | 16 | B.1.596 | 0.001394 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 8 | 14 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 6 | 14 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 13 | 13 | AY.46.6 | 0.000939 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 6 | 10 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 4 | 10 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 9 | 9 | B.1.1.466 | 0.078261 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 8 | 8 | A.2 | 0.005295 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1714 | T1714S | Act | Tct | 4 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1714 | T1714S | aCt | aGt | 3 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 6 | 6 | B.1.177.74 | 0.090909 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 5 | 5 | B.1.177.35 | 0.003455 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 4 | 4 | B.1.1.204 | 0.012158 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1714 | T1714V | ACt | GTt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1714 | T1714H | ACt | CAt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714del1 | Act | -ct | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714H | ACT | CAC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714del1 | acT | ac- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | AY.58 | 0.002722 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1714 | T1714del1 | Act | -ct | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1714 | T1714S | Act | Tct | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1714 | T1714del1 | acT | ac- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1714 | T1714S | aCt | aGt | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.446 | 0.06 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 3 | 3 | C.32 | 0.069767 |
ORF1ab/nsp3 | 1714 | T1714V | ACt | GTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1714 | T1714S | aCt | aGt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1714 | T1714P | Act | Cct | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714N | aCT | aAC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714H | ACt | CAt | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714P | AcT | CcC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714H | ACT | CAC | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1714 | T1714P | Act | Cct | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1714 | T1714H | ACt | CAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1714 | T1714S | Act | Tct | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1714 | T1714L | ACt | CTt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714C | ACt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714del2 | ACt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714del2 | ACt | --t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714P | Act | Cct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1714 | T1714V | ACt | GTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714L | ACt | CTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1714 | T1714C | ACt | TGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1714 | T1714S | Act | Tct | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1714 | T1714T | acT | acA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1714 | T1714P | Act | Cct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1714 | T1714del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1714 | T1714N | aCt | aAt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1714 | T1714I | aCt | aTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1714 | T1714A | Act | Gct | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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