CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1711

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31711A1711VA2529VnonsyngCtgTt7197777197740.9999967850-7852
ORF1ab/nsp31711A1711VA2529VnonsyngCTgTC71977730.000004167967850-7852
ORF1ab/nsp31711A1711TA2529TnonsynGctAct2902880.9931037850-7852
ORF1ab/nsp31711A1711TA2529TnonsynGcTAcA29010.003448287850-7852
ORF1ab/nsp31711A1711TA2529TnonsynGcTAcC29010.003448287850-7852
ORF1ab/nsp31711A1711SA2529SnonsynGctTct1171160.9914537850-7852
ORF1ab/nsp31711A1711SA2529SnonsynGCtAGt11710.008547017850-7852
ORF1ab/nsp31711A1711delA2529deldelGCT---909017850-7852
ORF1ab/nsp31711A1711AA2529AsyngcTgcC88720.8181827850-7852
ORF1ab/nsp31711A1711AA2529AsyngcTgcA88150.1704557850-7852
ORF1ab/nsp31711A1711AA2529AsyngcTgcG8810.01136367850-7852
ORF1ab/nsp31711A1711del1A2529del1delGct-ct81800.9876547850-7852
ORF1ab/nsp31711A1711del1A2529del1delgCtg-t8110.01234577850-7852
ORF1ab/nsp31711A1711FA2529FnonsynGCtTTt777717850-7852
ORF1ab/nsp31711A1711GA2529GnonsyngCtgGt15130.8666677850-7852
ORF1ab/nsp31711A1711GA2529GnonsyngCTgGA1520.1333337850-7852
ORF1ab/nsp31711A1711IA2529InonsynGCtATt760.8571437850-7852
ORF1ab/nsp31711A1711IA2529InonsynGCTATC710.1428577850-7852
ORF1ab/nsp31711A1711DA2529DnonsyngCtgAt3317850-7852
ORF1ab/nsp31711A1711PA2529PnonsynGctCct3317850-7852
ORF1ab/nsp31711A1711CA2529CnonsynGCtTGt1117850-7852
ORF1ab/nsp31711A1711EA2529EnonsyngCTgAG1117850-7852

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31711A1711VgCtgTt719774719777All0.137665
ORF1ab/nsp31711A1711VgCTgTC3719777All0.000001
ORF1ab/nsp31711A1711VgCtgTt642496642498AY.40.999995
ORF1ab/nsp31711A1711VgCTgTC2642498AY.40.000003
ORF1ab/nsp31711A1711VgCtgTt4610746107AY.4.21
ORF1ab/nsp31711A1711VgCtgTt90769076AY.4.50.975599
ORF1ab/nsp31711A1711VgCtgTt65246524AY.4.2.10.97199
ORF1ab/nsp31711A1711VgCtgTt31093109AY.430.013774
ORF1ab/nsp31711A1711VgCtgTt23182318AY.4.40.948445
ORF1ab/nsp31711A1711VgCtgTt16041604B.1.617.20.00604
ORF1ab/nsp31711A1711VgCtgTt15061506B.1.1.70.001348
ORF1ab/nsp31711A1711VgCtgTt14201420AY.420.057127
ORF1ab/nsp31711A1711VgCtgTt13561356AY.4.11
ORF1ab/nsp31711A1711VgCtgTt10881088AY.4.30.915825
ORF1ab/nsp31711A1711VgCtgTt325325AY.410.095532
ORF1ab/nsp31711A1711TGctAct288290All0.000055
ORF1ab/nsp31711A1711TGcTAcC1290All0
ORF1ab/nsp31711A1711TGcTAcA1290All0
ORF1ab/nsp31711A1711VgCtgTt208208B.1.5610.082572
ORF1ab/nsp31711A1711VgCtgTt205205B.10.001878
ORF1ab/nsp31711A1711VgCtgTt204204W.20.985507
ORF1ab/nsp31711A1711VgCtgTt168168N.91
ORF1ab/nsp31711A1711VgCtgTt158158B.1.1.700.053888
ORF1ab/nsp31711A1711VgCtgTt124124B.1.20.001092
ORF1ab/nsp31711A1711VgCtgTt121121P.10.001906
ORF1ab/nsp31711A1711SGctTct116117All0.000022
ORF1ab/nsp31711A1711SGCtAGt1117All0
ORF1ab/nsp31711A1711VgCtgTt104104B.1.1770.001369
ORF1ab/nsp31711A1711VgCtgTt9595B.1.1.3391
ORF1ab/nsp31711A1711delGCT---9090All0.000017
ORF1ab/nsp31711A1711AgcTgcC7288All0.000014
ORF1ab/nsp31711A1711AgcTgcA1588All0.000003
ORF1ab/nsp31711A1711AgcTgcG188All0
ORF1ab/nsp31711A1711VgCtgTt8888AY.440.000536
ORF1ab/nsp31711A1711VgCtgTt8484B.1.1651
ORF1ab/nsp31711A1711del1Gct-ct8081All0.000015
ORF1ab/nsp31711A1711del1gCtg-t181All0
ORF1ab/nsp31711A1711FGCtTTt7777All0.000015
ORF1ab/nsp31711A1711FGCtTTt7777B.1.617.20.00029
ORF1ab/nsp31711A1711VgCtgTt7171AY.46.60.005127
ORF1ab/nsp31711A1711VgCtgTt6969AY.620.030065
ORF1ab/nsp31711A1711del1Gct-ct6666B.1.1.70.000059
ORF1ab/nsp31711A1711TGctAct5757B.1.1770.000751
ORF1ab/nsp31711A1711VgCtgTt5454B.1.10.00098
ORF1ab/nsp31711A1711TGctAct4949B.1.1.70.000044
ORF1ab/nsp31711A1711TGctAct4949P.10.000772
ORF1ab/nsp31711A1711VgCtgTt4848B.1.36.290.024832
ORF1ab/nsp31711A1711VgCtgTt4646AY.1020.00122
ORF1ab/nsp31711A1711delGCT---4242B.1.1.70.000038
ORF1ab/nsp31711A1711VgCtgTt4242B.1.5700.123529
ORF1ab/nsp31711A1711VgCtgTt3939AY.9.10.003265
ORF1ab/nsp31711A1711VgCtgTt3939B.1.5250.004413
ORF1ab/nsp31711A1711VgCtgTt3737AY.460.003851
ORF1ab/nsp31711A1711VgCtgTt3737AY.540.003528
ORF1ab/nsp31711A1711VgCtgTt3535AY.390.000865
ORF1ab/nsp31711A1711VgCtgTt3535B.1.5960.00305
ORF1ab/nsp31711A1711VgCtgTt3434AY.1200.001264
ORF1ab/nsp31711A1711VgCtgTt3434C.350.026316
ORF1ab/nsp31711A1711VgCtgTt3131B.1.3510.000922
ORF1ab/nsp31711A1711VgCtgTt2828B.1.5260.000658
ORF1ab/nsp31711A1711VgCtgTt2727B.1.2100.057569
ORF1ab/nsp31711A1711TGctAct2525B.1.617.20.000094
ORF1ab/nsp31711A1711VgCtgTt2525B.6.60.022222
ORF1ab/nsp31711A1711VgCtgTt2424B.1.1.4340.008365
ORF1ab/nsp31711A1711AgcTgcC1523B.1.1.70.000013
ORF1ab/nsp31711A1711AgcTgcA823B.1.1.70.000007
ORF1ab/nsp31711A1711VgCtgTt2323B.1.177.750.023933
ORF1ab/nsp31711A1711VgCtgTt2222AY.260.000623
ORF1ab/nsp31711A1711VgCtgTt2222AY.46.10.022587
ORF1ab/nsp31711A1711VgCtgTt1818AY.50.000372
ORF1ab/nsp31711A1711VgCtgTt1818B.1.6280.006342
ORF1ab/nsp31711A1711VgCtgTt1818P.1.150.004182
ORF1ab/nsp31711A1711VgCtgTt1717B.1.1.2220.003468
ORF1ab/nsp31711A1711GgCtgGt1315All0.000002
ORF1ab/nsp31711A1711GgCTgGA215All0
ORF1ab/nsp31711A1711VgCtgTt1515B.1.1.500.010183
ORF1ab/nsp31711A1711SGctTct1515B.1.617.20.000056
ORF1ab/nsp31711A1711VgCtgTt1414AY.60.000576
ORF1ab/nsp31711A1711SGctTct1414P.1.140.000669
ORF1ab/nsp31711A1711VgCtgTt1313AY.450.001582
ORF1ab/nsp31711A1711VgCtgTt1313P.1.140.000621
ORF1ab/nsp31711A1711TGctAct1212AY.330.000801
ORF1ab/nsp31711A1711GgCtgGt1212AY.9.20.000441
ORF1ab/nsp31711A1711VgCtgTt1111B.1.1.3180.003319
ORF1ab/nsp31711A1711VgCtgTt1111B.1.6210.000974
ORF1ab/nsp31711A1711SGctTct1010AY.250.00006
ORF1ab/nsp31711A1711VgCtgTt1010B.1.1600.000312
ORF1ab/nsp31711A1711SGctTct99AY.440.000055
ORF1ab/nsp31711A1711SGctTct99B.1.1.70.000008
ORF1ab/nsp31711A1711VgCtgTt99B.1.1390.006598
ORF1ab/nsp31711A1711VgCtgTt99B.1.2210.000639
ORF1ab/nsp31711A1711VgCtgTt88AD.20.001752
ORF1ab/nsp31711A1711TGctAct88AY.340.000776
ORF1ab/nsp31711A1711VgCtgTt88B.1.1.3120.015296
ORF1ab/nsp31711A1711SGctTct88B.1.4290.000188
ORF1ab/nsp31711A1711VgCtgTt88C.370.000929
ORF1ab/nsp31711A1711IGCtATt67All0.000001
ORF1ab/nsp31711A1711IGCTATC17All0
ORF1ab/nsp31711A1711AgcTgcC77AY.440.000043
ORF1ab/nsp31711A1711VgCtgTt77AY.590.003708
ORF1ab/nsp31711A1711TGctAct77B.1.1.390.003568
ORF1ab/nsp31711A1711VgCtgTt77B.1.1.3930.777778
ORF1ab/nsp31711A1711TGctAct77B.1.1.5190.000278
ORF1ab/nsp31711A1711AgcTgcC77B.1.177.450.002669
ORF1ab/nsp31711A1711VgCtgTt77B.1.177.600.001529
ORF1ab/nsp31711A1711VgCtgTt77B.1.617.10.000903
ORF1ab/nsp31711A1711delGCT---77B.1.617.20.000026
ORF1ab/nsp31711A1711VgCtgTt77Z.10.020231
ORF1ab/nsp31711A1711VgCtgTt66A.2.50.002994
ORF1ab/nsp31711A1711VgCtgTt66AY.5.30.002024
ORF1ab/nsp31711A1711TGctAct66B.10.000055
ORF1ab/nsp31711A1711AgcTgcC36B.10.000027
ORF1ab/nsp31711A1711AgcTgcA26B.10.000018
ORF1ab/nsp31711A1711AgcTgcG16B.10.000009
ORF1ab/nsp31711A1711SGctTct56B.1.10.000091
ORF1ab/nsp31711A1711SGCtAGt16B.1.10.000018
ORF1ab/nsp31711A1711VgCtgTt66B.310.022388
ORF1ab/nsp31711A1711VgCtgTt66B.400.002186
ORF1ab/nsp31711A1711VgCtgTt55AY.1190.000177
ORF1ab/nsp31711A1711VgCtgTt55AY.34.10.00255
ORF1ab/nsp31711A1711VgCtgTt55AY.630.001934
ORF1ab/nsp31711A1711VgCtgTt55AY.740.000578
ORF1ab/nsp31711A1711SGctTct55AY.750.00028
ORF1ab/nsp31711A1711VgCtgTt55AY.90.000338
ORF1ab/nsp31711A1711VgCtgTt55AY.98.10.000242
ORF1ab/nsp31711A1711VgCtgTt55B.1.1.3690.002231
ORF1ab/nsp31711A1711VgCtgTt55B.1.177.560.003338
ORF1ab/nsp31711A1711AgcTgcC55B.1.617.20.000019
ORF1ab/nsp31711A1711IGCtATt340.166667
ORF1ab/nsp31711A1711TGctAct340.166667
ORF1ab/nsp31711A1711AgcTgcA240.111111
ORF1ab/nsp31711A1711AgcTgcC240.111111
ORF1ab/nsp31711A1711IGCTATC140.055556
ORF1ab/nsp31711A1711TGcTAcC140.055556
ORF1ab/nsp31711A1711VgCtgTt44AY.1030.000025
ORF1ab/nsp31711A1711VgCtgTt44AY.1170.000338
ORF1ab/nsp31711A1711VgCtgTt44AY.1180.000251
ORF1ab/nsp31711A1711SGctTct44AY.330.000267
ORF1ab/nsp31711A1711SGctTct44AY.430.000018
ORF1ab/nsp31711A1711TGctAct44AY.440.000024
ORF1ab/nsp31711A1711VgCtgTt44AY.530.00115
ORF1ab/nsp31711A1711TGctAct44AY.540.000381
ORF1ab/nsp31711A1711VgCtgTt44AY.980.000316
ORF1ab/nsp31711A1711VgCtgTt44B.1.1.280.001245
ORF1ab/nsp31711A1711TGctAct44B.1.36.90.012862
ORF1ab/nsp31711A1711VgCtgTt44P.1.100.001078
ORF1ab/nsp31711A1711AgcTgcC33A.190.028302
ORF1ab/nsp31711A1711DgCtgAt33All0.000001
ORF1ab/nsp31711A1711PGctCct33All0.000001
ORF1ab/nsp31711A1711TGctAct33AY.1020.00008
ORF1ab/nsp31711A1711VgCtgTt33AY.230.000209
ORF1ab/nsp31711A1711AgcTgcC33AY.250.000018
ORF1ab/nsp31711A1711SGctTct33AY.30.00003
ORF1ab/nsp31711A1711AgcTgcC33AY.30.00003
ORF1ab/nsp31711A1711TGctAct33AY.380.001498
ORF1ab/nsp31711A1711TGctAct33AY.50.000062
ORF1ab/nsp31711A1711VgCtgTt33AY.920.000862
ORF1ab/nsp31711A1711VgCtgTt33AY.930.000819
ORF1ab/nsp31711A1711TGctAct33AY.99.20.000276
ORF1ab/nsp31711A1711TGctAct23B.1.10.000036
ORF1ab/nsp31711A1711TGcTAcA13B.1.10.000018
ORF1ab/nsp31711A1711VgCtgTt33B.1.1.250.001706
ORF1ab/nsp31711A1711VgCtgTt33B.1.1.460.0131
ORF1ab/nsp31711A1711del1Gct-ct33B.1.177.820.001432
ORF1ab/nsp31711A1711TGctAct33B.1.20.000026
ORF1ab/nsp31711A1711del1Gct-ct33B.1.3510.000089
ORF1ab/nsp31711A1711VgCtgTt33B.1.3750.002459
ORF1ab/nsp31711A1711VgCtgTt33B.1.4970.000944
ORF1ab/nsp31711A1711VgCtgTt33B.1.5090.002597
ORF1ab/nsp31711A1711AgcTgcC23B.1.5960.000174
ORF1ab/nsp31711A1711AgcTgcA13B.1.5960.000087
ORF1ab/nsp31711A1711IGCtATt33B.1.617.20.000011
ORF1ab/nsp31711A1711VgCtgTt33D.20.000225
ORF1ab/nsp31711A1711VgCtgTt33P.1.20.003468
ORF1ab/nsp31711A1711VgCtgTt33P.20.00056
ORF1ab/nsp31711A1711GgCTgGA220.111111
ORF1ab/nsp31711A1711delGCT---220.111111
ORF1ab/nsp31711A1711VgCTgTC120.055556
ORF1ab/nsp31711A1711VgCtgTt120.055556
ORF1ab/nsp31711A1711VgCtgTt22A.20.001324
ORF1ab/nsp31711A1711SGctTct22A.2.50.000998
ORF1ab/nsp31711A1711VgCtgTt22A.23.10.001408
ORF1ab/nsp31711A1711VgCtgTt22AY.100.00106
ORF1ab/nsp31711A1711TGctAct22AY.1000.000092
ORF1ab/nsp31711A1711AgcTgcC22AY.1020.000053
ORF1ab/nsp31711A1711SGctTct22AY.1020.000053
ORF1ab/nsp31711A1711SGctTct22AY.1030.000012
ORF1ab/nsp31711A1711VgCtgTt22AY.1090.001479
ORF1ab/nsp31711A1711TGctAct22AY.110.002677
ORF1ab/nsp31711A1711VgCtgTt22AY.1100.000225
ORF1ab/nsp31711A1711VgCtgTt22AY.270.000129
ORF1ab/nsp31711A1711TGctAct22AY.30.00002
ORF1ab/nsp31711A1711VgCtgTt22AY.30.00002
ORF1ab/nsp31711A1711AgcTgcC22AY.430.000009
ORF1ab/nsp31711A1711delGCT---22AY.440.000012
ORF1ab/nsp31711A1711delGCT---22AY.46.20.001271
ORF1ab/nsp31711A1711del1Gct-ct22AY.520.001629
ORF1ab/nsp31711A1711VgCtgTt22AY.580.001815
ORF1ab/nsp31711A1711VgCtgTt22AY.610.00021
ORF1ab/nsp31711A1711AgcTgcC22AY.720.002721
ORF1ab/nsp31711A1711VgCtgTt22AY.75.10.000361
ORF1ab/nsp31711A1711VgCtgTt22AY.870.001665
ORF1ab/nsp31711A1711VgCtgTt22AY.9.20.000073
ORF1ab/nsp31711A1711AgcTgcC22AY.9.20.000073
ORF1ab/nsp31711A1711VgCtgTt22B0.000256
ORF1ab/nsp31711A1711SGctTct22B.10.000018
ORF1ab/nsp31711A1711delGCT---22B.10.000018
ORF1ab/nsp31711A1711AgcTgcA12B.1.10.000018
ORF1ab/nsp31711A1711AgcTgcC12B.1.10.000018
ORF1ab/nsp31711A1711SGctTct22B.1.1.10.000653
ORF1ab/nsp31711A1711SGctTct22B.1.1.2140.000111
ORF1ab/nsp31711A1711VgCtgTt22B.1.1.2190.01
ORF1ab/nsp31711A1711delGCT---22B.1.1.2360.013793
ORF1ab/nsp31711A1711VgCtgTt22B.1.1.2940.002532
ORF1ab/nsp31711A1711VgCtgTt22B.1.1.3720.001377
ORF1ab/nsp31711A1711VgCtgTt22B.1.1.4620.017241
ORF1ab/nsp31711A1711del1Gct-ct22B.1.1600.000062
ORF1ab/nsp31711A1711TGctAct22B.1.1600.000062
ORF1ab/nsp31711A1711AgcTgcC22B.1.1600.000062
ORF1ab/nsp31711A1711delGCT---22B.1.1770.000026
ORF1ab/nsp31711A1711VgCtgTt22B.1.177.210.000153
ORF1ab/nsp31711A1711VgCtgTt22B.1.177.440.001038
ORF1ab/nsp31711A1711VgCtgTt22B.1.177.570.000562
ORF1ab/nsp31711A1711VgCtgTt22B.1.177.650.001331
ORF1ab/nsp31711A1711delGCT---22B.1.2580.000133
ORF1ab/nsp31711A1711AgcTgcC22B.1.5260.000047
ORF1ab/nsp31711A1711VgCtgTt22B.1.5770.001375
ORF1ab/nsp31711A1711VgCtgTt22B.390.004662
ORF1ab/nsp31711A1711TGctAct22D.20.00015
ORF1ab/nsp31711A1711SGctTct22P.10.000032
ORF1ab/nsp31711A1711TGctAct22P.1.10.000635
ORF1ab/nsp31711A1711VgCtgTt22Q.10.000253
ORF1ab/nsp31711A1711delGCT---11A0.000387
ORF1ab/nsp31711A1711TGctAct11A.10.000282
ORF1ab/nsp31711A1711VgCtgTt11A.280.002646
ORF1ab/nsp31711A1711EgCTgAG11All0
ORF1ab/nsp31711A1711CGCtTGt11All0
ORF1ab/nsp31711A1711AgcTgcA11AY.100.00053
ORF1ab/nsp31711A1711AgcTgcC11AY.1000.000046
ORF1ab/nsp31711A1711delGCT---11AY.1030.000006
ORF1ab/nsp31711A1711TGctAct11AY.1030.000006
ORF1ab/nsp31711A1711AgcTgcC11AY.1030.000006
ORF1ab/nsp31711A1711VgCtgTt11AY.1040.001984
ORF1ab/nsp31711A1711VgCtgTt11AY.110.001339
ORF1ab/nsp31711A1711VgCtgTt11AY.1110.000183
ORF1ab/nsp31711A1711delGCT---11AY.1110.000183
ORF1ab/nsp31711A1711VgCtgTt11AY.120.000316
ORF1ab/nsp31711A1711delGCT---11AY.1200.000037
ORF1ab/nsp31711A1711VgCtgTt11AY.1210.000135
ORF1ab/nsp31711A1711AgcTgcC11AY.130.000161
ORF1ab/nsp31711A1711AgcTgcC11AY.140.000088
ORF1ab/nsp31711A1711delGCT---11AY.190.00114
ORF1ab/nsp31711A1711TGctAct11AY.230.00007
ORF1ab/nsp31711A1711TGctAct11AY.250.000006
ORF1ab/nsp31711A1711SGctTct11AY.290.000016
ORF1ab/nsp31711A1711delGCT---11AY.330.000067
ORF1ab/nsp31711A1711VgCtgTt11AY.340.000097
ORF1ab/nsp31711A1711SGctTct11AY.34.10.00051
ORF1ab/nsp31711A1711delGCT---11AY.360.000148
ORF1ab/nsp31711A1711TGctAct11AY.390.000025
ORF1ab/nsp31711A1711delGCT---11AY.430.000004
ORF1ab/nsp31711A1711TGctAct11AY.430.000004
ORF1ab/nsp31711A1711del1Gct-ct11AY.440.000006
ORF1ab/nsp31711A1711VgCtgTt11AY.46.20.000635
ORF1ab/nsp31711A1711VgCtgTt11AY.46.40.000165
ORF1ab/nsp31711A1711TGctAct11AY.470.000031
ORF1ab/nsp31711A1711delGCT---11AY.50.000021
ORF1ab/nsp31711A1711VgCtgTt11AY.5.40.000277
ORF1ab/nsp31711A1711VgCtgTt11AY.500.000799
ORF1ab/nsp31711A1711VgCtgTt11AY.520.000814
ORF1ab/nsp31711A1711delGCT---11AY.520.000814
ORF1ab/nsp31711A1711VgCtgTt11AY.550.000917
ORF1ab/nsp31711A1711delGCT---11AY.60.000041
ORF1ab/nsp31711A1711AgcTgcC11AY.610.000105
ORF1ab/nsp31711A1711VgCtgTt11AY.660.00107
ORF1ab/nsp31711A1711VgCtgTt11AY.680.000274
ORF1ab/nsp31711A1711SGctTct11AY.7.10.000113
ORF1ab/nsp31711A1711VgCtgTt11AY.7.10.000113
ORF1ab/nsp31711A1711VgCtgTt11AY.710.000475
ORF1ab/nsp31711A1711SGctTct11AY.710.000475
ORF1ab/nsp31711A1711VgCtgTt11AY.750.000056
ORF1ab/nsp31711A1711TGctAct11AY.75.10.00018
ORF1ab/nsp31711A1711DgCtgAt11AY.790.001211
ORF1ab/nsp31711A1711VgCtgTt11AY.80.000606
ORF1ab/nsp31711A1711delGCT---11AY.810.001992
ORF1ab/nsp31711A1711delGCT---11AY.840.000437
ORF1ab/nsp31711A1711VgCtgTt11AY.840.000437
ORF1ab/nsp31711A1711delGCT---11AY.90.000068
ORF1ab/nsp31711A1711TGctAct11AY.90.000068
ORF1ab/nsp31711A1711delGCT---11AY.9.20.000037
ORF1ab/nsp31711A1711VgCtgTt11AY.900.000684
ORF1ab/nsp31711A1711VgCtgTt11AY.960.002075
ORF1ab/nsp31711A1711TGctAct11AY.980.000079
ORF1ab/nsp31711A1711SGctTct11AY.980.000079
ORF1ab/nsp31711A1711VgCtgTt11AY.990.001049
ORF1ab/nsp31711A1711delGCT---11AY.990.001049
ORF1ab/nsp31711A1711delGCT---11AY.99.10.001553
ORF1ab/nsp31711A1711del1gCtg-t11B0.000128
ORF1ab/nsp31711A1711PGctCct11B.10.000009
ORF1ab/nsp31711A1711GgCtgGt11B.1.10.000018
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.1250.010204
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.1640.005155
ORF1ab/nsp31711A1711AgcTgcC11B.1.1.1710.003676
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.2530.002506
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.2730.006757
ORF1ab/nsp31711A1711TGctAct11B.1.1.3060.000438
ORF1ab/nsp31711A1711SGctTct11B.1.1.3060.000438
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.3160.000925
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.370.000193
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.3740.002375
ORF1ab/nsp31711A1711DgCtgAt11B.1.1.4090.002833
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.4330.001425
ORF1ab/nsp31711A1711TGctAct11B.1.1.440.00241
ORF1ab/nsp31711A1711delGCT---11B.1.1.460.004367
ORF1ab/nsp31711A1711SGctTct11B.1.1.4640.001473
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.5230.001563
ORF1ab/nsp31711A1711VgCtgTt11B.1.1.5260.003546
ORF1ab/nsp31711A1711TGctAct11B.1.1.610.008772
ORF1ab/nsp31711A1711DgCtgAt11B.1.1.70.000001
ORF1ab/nsp31711A1711PGctCct11B.1.1.70.000001
ORF1ab/nsp31711A1711SGctTct11B.1.110.30.000718
ORF1ab/nsp31711A1711VgCtgTt11B.1.160.120.00641
ORF1ab/nsp31711A1711VgCtgTt11B.1.160.160.000929
ORF1ab/nsp31711A1711SGctTct11B.1.160.290.004219
ORF1ab/nsp31711A1711AgcTgcC11B.1.1770.000013
ORF1ab/nsp31711A1711VgCtgTt11B.1.177.100.000878
ORF1ab/nsp31711A1711VgCtgTt11B.1.177.160.000664
ORF1ab/nsp31711A1711PGctCct11B.1.177.20.004545
ORF1ab/nsp31711A1711delGCT---11B.1.177.210.000076
ORF1ab/nsp31711A1711delGCT---11B.1.177.40.000211
ORF1ab/nsp31711A1711TGctAct11B.1.177.560.000668
ORF1ab/nsp31711A1711delGCT---11B.1.177.570.000281
ORF1ab/nsp31711A1711del1Gct-ct11B.1.177.60.000977
ORF1ab/nsp31711A1711delGCT---11B.1.177.60.000977
ORF1ab/nsp31711A1711VgCtgTt11B.1.177.610.043478
ORF1ab/nsp31711A1711VgCtgTt11B.1.177.70.000165
ORF1ab/nsp31711A1711delGCT---11B.1.177.830.001481
ORF1ab/nsp31711A1711VgCtgTt11B.1.177.860.000183
ORF1ab/nsp31711A1711SGctTct11B.1.20.000009
ORF1ab/nsp31711A1711VgCtgTt11B.1.220.001318
ORF1ab/nsp31711A1711TGctAct11B.1.2210.000071
ORF1ab/nsp31711A1711VgCtgTt11B.1.2230.002778
ORF1ab/nsp31711A1711VgCtgTt11B.1.2400.000216
ORF1ab/nsp31711A1711VgCtgTt11B.1.2430.00007
ORF1ab/nsp31711A1711VgCtgTt11B.1.2580.000067
ORF1ab/nsp31711A1711delGCT---11B.1.258.100.011364
ORF1ab/nsp31711A1711EgCTgAG11B.1.3320.003497
ORF1ab/nsp31711A1711TGctAct11B.1.3360.002439
ORF1ab/nsp31711A1711AgcTgcC11B.1.3510.00003
ORF1ab/nsp31711A1711delGCT---11B.1.360.000146
ORF1ab/nsp31711A1711VgCtgTt11B.1.360.000146
ORF1ab/nsp31711A1711del1Gct-ct11B.1.36.10.00114
ORF1ab/nsp31711A1711SGctTct11B.1.36.290.000517
ORF1ab/nsp31711A1711VgCtgTt11B.1.36.360.000602
ORF1ab/nsp31711A1711VgCtgTt11B.1.3670.000792
ORF1ab/nsp31711A1711SGctTct11B.1.3670.000792
ORF1ab/nsp31711A1711VgCtgTt11B.1.3770.004566
ORF1ab/nsp31711A1711delGCT---11B.1.4090.000781
ORF1ab/nsp31711A1711TGctAct11B.1.4270.00005
ORF1ab/nsp31711A1711TGctAct11B.1.4290.000024
ORF1ab/nsp31711A1711VgCtgTt11B.1.4330.003195
ORF1ab/nsp31711A1711SGctTct11B.1.5510.00129
ORF1ab/nsp31711A1711VgCtgTt11B.1.5820.000491
ORF1ab/nsp31711A1711SGctTct11B.1.5820.000491
ORF1ab/nsp31711A1711VgCtgTt11B.1.6090.000479
ORF1ab/nsp31711A1711TGctAct11B.1.6370.000073
ORF1ab/nsp31711A1711TGctAct11B.1.810.021277
ORF1ab/nsp31711A1711VgCtgTt11B.550.00295
ORF1ab/nsp31711A1711SGctTct11B.550.00295
ORF1ab/nsp31711A1711TGctAct11C.10.002392
ORF1ab/nsp31711A1711CGCtTGt11C.350.000774
ORF1ab/nsp31711A1711TGctAct11C.36.30.000567
ORF1ab/nsp31711A1711delGCT---11P.10.000016
ORF1ab/nsp31711A1711TGctAct11P.1.120.000484
ORF1ab/nsp31711A1711VgCtgTt11P.1.70.000319
ORF1ab/nsp31711A1711SGctTct11P.20.000187
ORF1ab/nsp31711A1711VgCtgTt11P.30.001595
ORF1ab/nsp31711A1711AgcTgcC11Q.10.000126
ORF1ab/nsp31711A1711TGctAct11Q.10.000126
ORF1ab/nsp31711A1711del1Gct-ct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.