CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 171

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3171G171VG989VnonsyngGtgTt503350290.9992053230-3232
ORF1ab/nsp3171G171VG989VnonsyngGTgTA503320.0003973773230-3232
ORF1ab/nsp3171G171VG989VnonsyngGTgTC503320.0003973773230-3232
ORF1ab/nsp3171G171SG989SnonsynGgtAgt70270213230-3232
ORF1ab/nsp3171G171DG989DnonsyngGtgAt56856813230-3232
ORF1ab/nsp3171G171GG989GsynggTggC2772650.9566793230-3232
ORF1ab/nsp3171G171GG989GsynggTggA27770.02527083230-3232
ORF1ab/nsp3171G171GG989GsynggTggG27750.01805053230-3232
ORF1ab/nsp3171G171CG989CnonsynGgtTgt27327313230-3232
ORF1ab/nsp3171G171delG989deldelGGT---919113230-3232
ORF1ab/nsp3171G171RG989RnonsynGgtCgt363613230-3232
ORF1ab/nsp3171G171AG989AnonsyngGtgCt8813230-3232
ORF1ab/nsp3171G171KG989KnonsynGGTAAA6613230-3232
ORF1ab/nsp3171G171del1G989del1delGgt-gt430.753230-3232
ORF1ab/nsp3171G171del1G989del1delGGt-At410.253230-3232
ORF1ab/nsp3171G171NG989NnonsynGGtAAt1113230-3232
ORF1ab/nsp3171G171FG989FnonsynGGtTTt1113230-3232
ORF1ab/nsp3171G171IG989InonsynGGtATt1113230-3232

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3171G171VgGtgTt50295033All0.000962
ORF1ab/nsp3171G171VgGTgTA25033All0
ORF1ab/nsp3171G171VgGTgTC25033All0
ORF1ab/nsp3171G171VgGtgTt23272327B.1.5170.993595
ORF1ab/nsp3171G171SGgtAgt702702All0.000134
ORF1ab/nsp3171G171DgGtgAt568568All0.000109
ORF1ab/nsp3171G171VgGtgTt360360AY.40.00056
ORF1ab/nsp3171G171VgGtgTt340342B.1.1.70.000304
ORF1ab/nsp3171G171VgGTgTA2342B.1.1.70.000002
ORF1ab/nsp3171G171GggTggC265277All0.000051
ORF1ab/nsp3171G171GggTggA7277All0.000001
ORF1ab/nsp3171G171GggTggG5277All0.000001
ORF1ab/nsp3171G171CGgtTgt273273All0.000052
ORF1ab/nsp3171G171VgGtgTt255255AY.650.135928
ORF1ab/nsp3171G171VgGtgTt196196B.1.617.20.000738
ORF1ab/nsp3171G171VgGtgTt190190B.1.517.11
ORF1ab/nsp3171G171SGgtAgt175175B.1.1.70.000157
ORF1ab/nsp3171G171DgGtgAt174174B.1.20.001532
ORF1ab/nsp3171G171VgGtgTt172172B.1.20.001515
ORF1ab/nsp3171G171VgGtgTt144144B.1.3750.118033
ORF1ab/nsp3171G171VgGtgTt135135B.10.001237
ORF1ab/nsp3171G171VgGtgTt123123AY.1200.004573
ORF1ab/nsp3171G171SGgtAgt102102U.20.894737
ORF1ab/nsp3171G171delGGT---9191All0.000017
ORF1ab/nsp3171G171SGgtAgt8888B.1.1.2750.988764
ORF1ab/nsp3171G171GggTggC7374B.1.1.70.000065
ORF1ab/nsp3171G171GggTggA174B.1.1.70.000001
ORF1ab/nsp3171G171VgGtgTt6969AY.440.00042
ORF1ab/nsp3171G171VgGtgTt6565AY.430.000288
ORF1ab/nsp3171G171VgGtgTt6262AY.710.029454
ORF1ab/nsp3171G171CGgtTgt4949B.1.1.3050.189189
ORF1ab/nsp3171G171DgGtgAt3737AY.40.000058
ORF1ab/nsp3171G171DgGtgAt3737B.1.1.70.000033
ORF1ab/nsp3171G171RGgtCgt3636All0.000007
ORF1ab/nsp3171G171VgGtgTt3535B.1.10.000635
ORF1ab/nsp3171G171SGgtAgt3434AY.1190.0012
ORF1ab/nsp3171G171VgGtgTt3232B.1.1.5190.001271
ORF1ab/nsp3171G171CGgtTgt3131B.1.3510.000922
ORF1ab/nsp3171G171SGgtAgt3030AY.9.20.001102
ORF1ab/nsp3171G171VgGtgTt2929AY.30.000288
ORF1ab/nsp3171G171DgGtgAt2828AY.1030.000174
ORF1ab/nsp3171G171GggTggC2828AY.30.000278
ORF1ab/nsp3171G171DgGtgAt2828B.1.617.20.000105
ORF1ab/nsp3171G171CGgtTgt2727AF.11
ORF1ab/nsp3171G171DgGtgAt2727P.10.000425
ORF1ab/nsp3171G171VgGtgTt2626A.10.007328
ORF1ab/nsp3171G171SGgtAgt2626AY.40.00004
ORF1ab/nsp3171G171SGgtAgt2626Q.10.003284
ORF1ab/nsp3171G171DgGtgAt2525AY.39.10.00099
ORF1ab/nsp3171G171VgGtgTt2525P.10.000394
ORF1ab/nsp3171G171DgGtgAt2424AY.430.000106
ORF1ab/nsp3171G171SGgtAgt2323AY.260.000651
ORF1ab/nsp3171G171GggTggC2223AY.40.000034
ORF1ab/nsp3171G171GggTggA123AY.40.000002
ORF1ab/nsp3171G171CGgtTgt2323AY.440.00014
ORF1ab/nsp3171G171GggTggC2121AY.430.000093
ORF1ab/nsp3171G171GggTggC1921B.1.617.20.000072
ORF1ab/nsp3171G171GggTggG221B.1.617.20.000008
ORF1ab/nsp3171G171VgGtgTt2020AY.390.000494
ORF1ab/nsp3171G171VgGtgTt1919AY.1210.002571
ORF1ab/nsp3171G171DgGtgAt1919B.1.5260.000447
ORF1ab/nsp3171G171VgGtgTt1818B.1.1600.000561
ORF1ab/nsp3171G171VgGtgTt1818B.1.360.002626
ORF1ab/nsp3171G171CGgtTgt1616AY.430.000071
ORF1ab/nsp3171G171GggTggC1616AY.840.006999
ORF1ab/nsp3171G171SGgtAgt1515AY.430.000066
ORF1ab/nsp3171G171DgGtgAt1515AY.440.000091
ORF1ab/nsp3171G171SGgtAgt1515B.1.20.000132
ORF1ab/nsp3171G171CGgtTgt1515B.1.617.20.000056
ORF1ab/nsp3171G171GggTggC1414AY.1030.000087
ORF1ab/nsp3171G171SGgtAgt1414AY.440.000085
ORF1ab/nsp3171G171SGgtAgt1414B.1.10.000254
ORF1ab/nsp3171G171VgGtgTt1313AY.250.000078
ORF1ab/nsp3171G171CGgtTgt1313B.1.1.70.000012
ORF1ab/nsp3171G171SGgtAgt1313B.1.930.012138
ORF1ab/nsp3171G171SGgtAgt1212AY.1030.000075
ORF1ab/nsp3171G171VgGtgTt1212AY.200.000466
ORF1ab/nsp3171G171CGgtTgt1212AY.40.000019
ORF1ab/nsp3171G171GggTggC1212AY.9.20.000441
ORF1ab/nsp3171G171SGgtAgt1212B.1.617.20.000045
ORF1ab/nsp3171G171DgGtgAt1111AY.1190.000388
ORF1ab/nsp3171G171VgGtgTt1111AY.320.005857
ORF1ab/nsp3171G171VgGtgTt1111AY.700.002294
ORF1ab/nsp3171G171CGgtTgt1111B.1.10.0002
ORF1ab/nsp3171G171delGGT---1111B.1.1.70.00001
ORF1ab/nsp3171G171SGgtAgt1111B.1.177.60.010742
ORF1ab/nsp3171G171DgGtgAt1111B.1.4970.003462
ORF1ab/nsp3171G171delGGT---1111U.20.096491
ORF1ab/nsp3171G171SGgtAgt1010AY.250.00006
ORF1ab/nsp3171G171VgGtgTt1010B.1.177.850.054348
ORF1ab/nsp3171G171DgGtgAt99AY.30.00009
ORF1ab/nsp3171G171DgGtgAt99AY.3.10.000767
ORF1ab/nsp3171G171VgGtgTt99B.1.1770.000119
ORF1ab/nsp3171G171AgGtgCt88All0.000002
ORF1ab/nsp3171G171DgGtgAt88AY.250.000048
ORF1ab/nsp3171G171VgGtgTt88B.1.2430.000557
ORF1ab/nsp3171G171DgGtgAt88B.1.2580.000532
ORF1ab/nsp3171G171SGgtAgt88P.10.000126
ORF1ab/nsp3171G171DgGtgAt77AY.980.000553
ORF1ab/nsp3171G171CGgtTgt77B.1.1770.000092
ORF1ab/nsp3171G171VgGtgTt77B.1.5260.000165
ORF1ab/nsp3171G171DgGtgAt77B.1.619.10.00449
ORF1ab/nsp3171G171VgGtgTt77D.20.000525
ORF1ab/nsp3171G171KGGTAAA66All0.000001
ORF1ab/nsp3171G171VgGtgTt66AY.1020.000159
ORF1ab/nsp3171G171VgGtgTt66AY.1030.000037
ORF1ab/nsp3171G171VgGtgTt66AY.130.000966
ORF1ab/nsp3171G171DgGtgAt66AY.200.000233
ORF1ab/nsp3171G171CGgtTgt66AY.250.000036
ORF1ab/nsp3171G171CGgtTgt66AY.30.00006
ORF1ab/nsp3171G171CGgtTgt66AY.39.10.000238
ORF1ab/nsp3171G171VgGtgTt66AY.4.50.000645
ORF1ab/nsp3171G171GggTggC66AY.440.000037
ORF1ab/nsp3171G171GggTggC66AY.920.001724
ORF1ab/nsp3171G171DgGtgAt66B.10.000055
ORF1ab/nsp3171G171delGGT---66B.10.000055
ORF1ab/nsp3171G171SGgtAgt66B.10.000055
ORF1ab/nsp3171G171RGgtCgt66B.1.2430.000418
ORF1ab/nsp3171G171DgGtgAt66B.1.3130.039474
ORF1ab/nsp3171G171GggTggC66B.1.4270.000303
ORF1ab/nsp3171G171GggTggC66B.1.4290.000141
ORF1ab/nsp3171G171VgGtgTt66B.1.5460.022222
ORF1ab/nsp3171G171DgGtgAt66C.370.000696
ORF1ab/nsp3171G171delGGT---55AY.1000.00023
ORF1ab/nsp3171G171VgGtgTt55AY.290.000079
ORF1ab/nsp3171G171VgGtgTt55AY.450.000608
ORF1ab/nsp3171G171VgGtgTt55AY.460.00052
ORF1ab/nsp3171G171VgGtgTt55AY.470.000156
ORF1ab/nsp3171G171VgGtgTt55AY.50.000103
ORF1ab/nsp3171G171VgGtgTt55AY.610.000524
ORF1ab/nsp3171G171VgGtgTt55AY.75.10.000902
ORF1ab/nsp3171G171GggTggA25B.10.000018
ORF1ab/nsp3171G171GggTggG25B.10.000018
ORF1ab/nsp3171G171GggTggC15B.10.000009
ORF1ab/nsp3171G171KGGTAAA55B.1.1.70.000004
ORF1ab/nsp3171G171VgGtgTt55B.1.4090.003906
ORF1ab/nsp3171G171SGgtAgt55B.1.5260.000118
ORF1ab/nsp3171G171RGgtCgt55B.1.617.20.000019
ORF1ab/nsp3171G171VgGtgTt55B.1.6370.000365
ORF1ab/nsp3171G171VgGtgTt55P.1.140.000239
ORF1ab/nsp3171G171VgGtgTt55P.20.000933
ORF1ab/nsp3171G171del1Ggt-gt34All0.000001
ORF1ab/nsp3171G171del1GGt-At14All0
ORF1ab/nsp3171G171VgGtgTt44AY.330.000267
ORF1ab/nsp3171G171VgGtgTt44AY.370.001264
ORF1ab/nsp3171G171AgGtgCt44AY.40.000006
ORF1ab/nsp3171G171delGGT---44AY.40.000006
ORF1ab/nsp3171G171delGGT---44AY.440.000024
ORF1ab/nsp3171G171VgGtgTt44AY.46.50.000794
ORF1ab/nsp3171G171RGgtCgt44AY.5.40.001107
ORF1ab/nsp3171G171VgGtgTt44AY.690.000747
ORF1ab/nsp3171G171VgGtgTt44AY.790.004843
ORF1ab/nsp3171G171VgGtgTt44AY.900.002738
ORF1ab/nsp3171G171DgGtgAt44B.1.177.810.000757
ORF1ab/nsp3171G171VgGtgTt44B.1.2580.000266
ORF1ab/nsp3171G171GggTggC44B.1.258.170.000416
ORF1ab/nsp3171G171CGgtTgt44B.1.5260.000094
ORF1ab/nsp3171G171VgGtgTt44B.1.5960.000349
ORF1ab/nsp3171G171delGGT---33AY.1020.00008
ORF1ab/nsp3171G171RGgtCgt33AY.1020.00008
ORF1ab/nsp3171G171SGgtAgt33AY.1020.00008
ORF1ab/nsp3171G171CGgtTgt33AY.1030.000019
ORF1ab/nsp3171G171DgGtgAt33AY.1200.000112
ORF1ab/nsp3171G171GggTggC33AY.260.000085
ORF1ab/nsp3171G171VgGtgTt33AY.270.000194
ORF1ab/nsp3171G171DgGtgAt33AY.290.000047
ORF1ab/nsp3171G171RGgtCgt33AY.340.000291
ORF1ab/nsp3171G171VgGtgTt33AY.4.20.000065
ORF1ab/nsp3171G171VgGtgTt33AY.750.000168
ORF1ab/nsp3171G171delGGT---33AY.75.10.000541
ORF1ab/nsp3171G171VgGtgTt33AY.90.000203
ORF1ab/nsp3171G171SGgtAgt33AY.99.20.000276
ORF1ab/nsp3171G171delGGT---33B.1.1.330.001263
ORF1ab/nsp3171G171VgGtgTt33B.1.1.3330.003229
ORF1ab/nsp3171G171VgGtgTt33B.1.1.3690.001339
ORF1ab/nsp3171G171VgGtgTt33B.1.1.4340.001046
ORF1ab/nsp3171G171SGgtAgt33B.1.1.630.001157
ORF1ab/nsp3171G171SGgtAgt33B.1.1.720.090909
ORF1ab/nsp3171G171VgGtgTt33B.1.1490.010274
ORF1ab/nsp3171G171CGgtTgt33B.1.1600.000094
ORF1ab/nsp3171G171DgGtgAt33B.1.1770.00004
ORF1ab/nsp3171G171SGgtAgt33B.1.177.630.008108
ORF1ab/nsp3171G171VgGtgTt33B.1.177.810.000568
ORF1ab/nsp3171G171CGgtTgt33B.1.20.000026
ORF1ab/nsp3171G171VgGtgTt33B.1.2210.000213
ORF1ab/nsp3171G171GggTggA33B.1.2430.000209
ORF1ab/nsp3171G171SGgtAgt33B.1.2580.0002
ORF1ab/nsp3171G171GggTggC33B.1.3490.002144
ORF1ab/nsp3171G171VgGtgTt33B.1.3510.000089
ORF1ab/nsp3171G171DgGtgAt33B.1.3560.005181
ORF1ab/nsp3171G171DgGtgAt33B.1.36.80.003
ORF1ab/nsp3171G171VgGtgTt33B.1.4270.000151
ORF1ab/nsp3171G171VgGtgTt33B.1.4730.057692
ORF1ab/nsp3171G171VgGtgTt33B.1.5950.000783
ORF1ab/nsp3171G171VgGtgTt33B.1.617.10.000387
ORF1ab/nsp3171G171VgGtgTt33B.1.6210.000266
ORF1ab/nsp3171G171delGGT---33B.580.030612
ORF1ab/nsp3171G171VgGtgTt33P.1.130.002695
ORF1ab/nsp3171G171DgGtgAt220.111111
ORF1ab/nsp3171G171VgGtgTt22A0.000774
ORF1ab/nsp3171G171VgGtgTt22AY.100.00106
ORF1ab/nsp3171G171DgGtgAt22AY.1020.000053
ORF1ab/nsp3171G171delGGT---22AY.1030.000012
ORF1ab/nsp3171G171SGgtAgt22AY.1130.000285
ORF1ab/nsp3171G171CGgtTgt22AY.1130.000285
ORF1ab/nsp3171G171delGGT---22AY.120.000632
ORF1ab/nsp3171G171VgGtgTt22AY.160.000759
ORF1ab/nsp3171G171CGgtTgt22AY.200.000078
ORF1ab/nsp3171G171delGGT---22AY.200.000078
ORF1ab/nsp3171G171SGgtAgt22AY.200.000078
ORF1ab/nsp3171G171VgGtgTt22AY.230.000139
ORF1ab/nsp3171G171VgGtgTt22AY.240.000862
ORF1ab/nsp3171G171DgGtgAt22AY.260.000057
ORF1ab/nsp3171G171DgGtgAt22AY.330.000134
ORF1ab/nsp3171G171SGgtAgt22AY.340.000194
ORF1ab/nsp3171G171VgGtgTt22AY.340.000194
ORF1ab/nsp3171G171SGgtAgt22AY.4.20.000043
ORF1ab/nsp3171G171VgGtgTt22AY.420.00008
ORF1ab/nsp3171G171RGgtCgt22AY.470.000062
ORF1ab/nsp3171G171CGgtTgt22AY.50.000041
ORF1ab/nsp3171G171VgGtgTt22AY.60.000082
ORF1ab/nsp3171G171VgGtgTt22AY.600.001876
ORF1ab/nsp3171G171delGGT---22AY.710.00095
ORF1ab/nsp3171G171VgGtgTt22AY.9.10.000167
ORF1ab/nsp3171G171VgGtgTt22AY.9.20.000073
ORF1ab/nsp3171G171CGgtTgt22B.10.000018
ORF1ab/nsp3171G171delGGT---22B.1.10.000036
ORF1ab/nsp3171G171DgGtgAt22B.1.1.1210.004854
ORF1ab/nsp3171G171SGgtAgt22B.1.1.1610.007067
ORF1ab/nsp3171G171VgGtgTt22B.1.1.1860.006873
ORF1ab/nsp3171G171VgGtgTt22B.1.1.2220.000408
ORF1ab/nsp3171G171VgGtgTt22B.1.1.2690.002706
ORF1ab/nsp3171G171SGgtAgt22B.1.1.280.000622
ORF1ab/nsp3171G171SGgtAgt22B.1.1.3060.000877
ORF1ab/nsp3171G171DgGtgAt22B.1.1.330.000842
ORF1ab/nsp3171G171VgGtgTt22B.1.1.330.000842
ORF1ab/nsp3171G171delGGT---22B.1.1.3480.001592
ORF1ab/nsp3171G171SGgtAgt22B.1.1.390.001019
ORF1ab/nsp3171G171GggTggC22B.1.1.4160.00181
ORF1ab/nsp3171G171RGgtCgt22B.1.1.70.000002
ORF1ab/nsp3171G171SGgtAgt22B.1.1390.001466
ORF1ab/nsp3171G171GggTggC22B.1.1770.000026
ORF1ab/nsp3171G171VgGtgTt22B.1.2100.004264
ORF1ab/nsp3171G171SGgtAgt22B.1.221.30.001667
ORF1ab/nsp3171G171VgGtgTt22B.1.243.20.028986
ORF1ab/nsp3171G171CGgtTgt22B.1.2840.026316
ORF1ab/nsp3171G171delGGT---22B.1.3370.011173
ORF1ab/nsp3171G171GggTggC22B.1.3510.000059
ORF1ab/nsp3171G171VgGtgTt22B.1.3620.003082
ORF1ab/nsp3171G171VgGtgTt22B.1.3780.013699
ORF1ab/nsp3171G171VgGtgTt22B.1.4000.000858
ORF1ab/nsp3171G171SGgtAgt22B.1.4990.002101
ORF1ab/nsp3171G171VgGtgTt22B.1.5580.009132
ORF1ab/nsp3171G171VgGtgTt22B.1.5810.018868
ORF1ab/nsp3171G171DgGtgAt22B.1.5960.000174
ORF1ab/nsp3171G171SGgtAgt22B.1.617.10.000258
ORF1ab/nsp3171G171CGgtTgt22B.1.617.10.000258
ORF1ab/nsp3171G171VgGtgTt12B.290.003509
ORF1ab/nsp3171G171VgGTgTC12B.290.003509
ORF1ab/nsp3171G171VgGTgTC12B.400.000364
ORF1ab/nsp3171G171VgGtgTt12B.400.000364
ORF1ab/nsp3171G171VgGtgTt22C.370.000232
ORF1ab/nsp3171G171RGgtCgt22D.20.00015
ORF1ab/nsp3171G171CGgtTgt22D.20.00015
ORF1ab/nsp3171G171delGGT---22N.60.014184
ORF1ab/nsp3171G171VgGtgTt11A.210.00277
ORF1ab/nsp3171G171VgGtgTt11A.230.010526
ORF1ab/nsp3171G171DgGtgAt11A.270.001656
ORF1ab/nsp3171G171FGGtTTt11All0
ORF1ab/nsp3171G171NGGtAAt11All0
ORF1ab/nsp3171G171IGGtATt11All0
ORF1ab/nsp3171G171VgGtgTt11AY.1000.000046
ORF1ab/nsp3171G171DgGtgAt11AY.1000.000046
ORF1ab/nsp3171G171GggTggC11AY.1020.000027
ORF1ab/nsp3171G171CGgtTgt11AY.1020.000027
ORF1ab/nsp3171G171delGGT---11AY.1080.001103
ORF1ab/nsp3171G171RGgtCgt11AY.1100.000113
ORF1ab/nsp3171G171VgGtgTt11AY.1100.000113
ORF1ab/nsp3171G171DgGtgAt11AY.1130.000142
ORF1ab/nsp3171G171VgGtgTt11AY.1140.000231
ORF1ab/nsp3171G171GggTggC11AY.1160.000287
ORF1ab/nsp3171G171DgGtgAt11AY.116.10.000311
ORF1ab/nsp3171G171GggTggC11AY.1170.000085
ORF1ab/nsp3171G171delGGT---11AY.1180.000063
ORF1ab/nsp3171G171del1GGt-At11AY.1190.000035
ORF1ab/nsp3171G171CGgtTgt11AY.1190.000035
ORF1ab/nsp3171G171VgGtgTt11AY.1190.000035
ORF1ab/nsp3171G171DgGtgAt11AY.120.000316
ORF1ab/nsp3171G171delGGT---11AY.1200.000037
ORF1ab/nsp3171G171RGgtCgt11AY.1200.000037
ORF1ab/nsp3171G171VgGtgTt11AY.120.10.000321
ORF1ab/nsp3171G171CGgtTgt11AY.1210.000135
ORF1ab/nsp3171G171GggTggC11AY.1210.000135
ORF1ab/nsp3171G171VgGtgTt11AY.140.000088
ORF1ab/nsp3171G171VgGtgTt11AY.16.10.00047
ORF1ab/nsp3171G171VgGtgTt11AY.190.00114
ORF1ab/nsp3171G171GggTggG11AY.200.000039
ORF1ab/nsp3171G171GggTggC11AY.230.00007
ORF1ab/nsp3171G171del1Ggt-gt11AY.250.000006
ORF1ab/nsp3171G171GggTggC11AY.29.10.000221
ORF1ab/nsp3171G171DgGtgAt11AY.29.10.000221
ORF1ab/nsp3171G171SGgtAgt11AY.30.00001
ORF1ab/nsp3171G171VgGtgTt11AY.3.10.000085
ORF1ab/nsp3171G171DgGtgAt11AY.300.000396
ORF1ab/nsp3171G171CGgtTgt11AY.34.10.00051
ORF1ab/nsp3171G171CGgtTgt11AY.390.000025
ORF1ab/nsp3171G171RGgtCgt11AY.390.000025
ORF1ab/nsp3171G171SGgtAgt11AY.390.000025
ORF1ab/nsp3171G171DgGtgAt11AY.390.000025
ORF1ab/nsp3171G171SGgtAgt11AY.39.10.00004
ORF1ab/nsp3171G171FGGtTTt11AY.40.000002
ORF1ab/nsp3171G171DgGtgAt11AY.4.20.000022
ORF1ab/nsp3171G171delGGT---11AY.4.20.000022
ORF1ab/nsp3171G171VgGtgTt11AY.4.2.10.000149
ORF1ab/nsp3171G171VgGtgTt11AY.4.40.000409
ORF1ab/nsp3171G171DgGtgAt11AY.4.50.000107
ORF1ab/nsp3171G171VgGtgTt11AY.410.000294
ORF1ab/nsp3171G171SGgtAgt11AY.420.00004
ORF1ab/nsp3171G171GggTggC11AY.420.00004
ORF1ab/nsp3171G171CGgtTgt11AY.420.00004
ORF1ab/nsp3171G171RGgtCgt11AY.430.000004
ORF1ab/nsp3171G171RGgtCgt11AY.440.000006
ORF1ab/nsp3171G171delGGT---11AY.460.000104
ORF1ab/nsp3171G171CGgtTgt11AY.460.000104
ORF1ab/nsp3171G171SGgtAgt11AY.460.000104
ORF1ab/nsp3171G171VgGtgTt11AY.46.10.001027
ORF1ab/nsp3171G171VgGtgTt11AY.46.60.000072
ORF1ab/nsp3171G171SGgtAgt11AY.46.60.000072
ORF1ab/nsp3171G171DgGtgAt11AY.50.000021
ORF1ab/nsp3171G171delGGT---11AY.50.000021
ORF1ab/nsp3171G171VgGtgTt11AY.5.30.000337
ORF1ab/nsp3171G171VgGtgTt11AY.5.40.000277
ORF1ab/nsp3171G171VgGtgTt11AY.530.000288
ORF1ab/nsp3171G171SGgtAgt11AY.570.000656
ORF1ab/nsp3171G171VgGtgTt11AY.590.00053
ORF1ab/nsp3171G171delGGT---11AY.610.000105
ORF1ab/nsp3171G171GggTggC11AY.630.000387
ORF1ab/nsp3171G171GggTggC11AY.70.000196
ORF1ab/nsp3171G171VgGtgTt11AY.7.10.000113
ORF1ab/nsp3171G171DgGtgAt11AY.75.10.00018
ORF1ab/nsp3171G171VgGtgTt11AY.870.000833
ORF1ab/nsp3171G171VgGtgTt11AY.880.000884
ORF1ab/nsp3171G171VgGtgTt11AY.890.004902
ORF1ab/nsp3171G171delGGT---11AY.90.000068
ORF1ab/nsp3171G171RGgtCgt11AY.90.000068
ORF1ab/nsp3171G171RGgtCgt11AY.9.10.000084
ORF1ab/nsp3171G171DgGtgAt11AY.9.20.000037
ORF1ab/nsp3171G171CGgtTgt11AY.9.20.000037
ORF1ab/nsp3171G171VgGtgTt11AY.920.000287
ORF1ab/nsp3171G171SGgtAgt11AY.930.000273
ORF1ab/nsp3171G171VgGtgTt11AY.950.000761
ORF1ab/nsp3171G171delGGT---11AY.980.000079
ORF1ab/nsp3171G171VgGtgTt11AY.990.001049
ORF1ab/nsp3171G171VgGtgTt11AY.99.10.001553
ORF1ab/nsp3171G171DgGtgAt11B0.000128
ORF1ab/nsp3171G171CGgtTgt11B0.000128
ORF1ab/nsp3171G171SGgtAgt11B0.000128
ORF1ab/nsp3171G171RGgtCgt11B.10.000009
ORF1ab/nsp3171G171AgGtgCt11B.1.10.000018
ORF1ab/nsp3171G171DgGtgAt11B.1.10.000018
ORF1ab/nsp3171G171SGgtAgt11B.1.1.10.000327
ORF1ab/nsp3171G171VgGtgTt11B.1.1.1210.002427
ORF1ab/nsp3171G171VgGtgTt11B.1.1.1890.001513
ORF1ab/nsp3171G171VgGtgTt11B.1.1.2160.00089
ORF1ab/nsp3171G171SGgtAgt11B.1.1.2300.009174
ORF1ab/nsp3171G171delGGT---11B.1.1.2840.000107
ORF1ab/nsp3171G171VgGtgTt11B.1.1.2910.000742
ORF1ab/nsp3171G171VgGtgTt11B.1.1.2940.001266
ORF1ab/nsp3171G171VgGtgTt11B.1.1.3060.000438
ORF1ab/nsp3171G171DgGtgAt11B.1.1.3110.000358
ORF1ab/nsp3171G171VgGtgTt11B.1.1.3160.000925
ORF1ab/nsp3171G171VgGtgTt11B.1.1.3180.000302
ORF1ab/nsp3171G171CGgtTgt11B.1.1.3480.000796
ORF1ab/nsp3171G171CGgtTgt11B.1.1.3720.000689
ORF1ab/nsp3171G171DgGtgAt11B.1.1.3720.000689
ORF1ab/nsp3171G171DgGtgAt11B.1.1.390.00051
ORF1ab/nsp3171G171VgGtgTt11B.1.1.5180.006329
ORF1ab/nsp3171G171GggTggC11B.1.1.5190.00004
ORF1ab/nsp3171G171CGgtTgt11B.1.1.5190.00004
ORF1ab/nsp3171G171IGGtATt11B.1.1.70.000001
ORF1ab/nsp3171G171del1Ggt-gt11B.1.1.70.000001
ORF1ab/nsp3171G171AgGtgCt11B.1.1.70.000001
ORF1ab/nsp3171G171CGgtTgt11B.1.1.700.000341
ORF1ab/nsp3171G171SGgtAgt11B.1.110.20.166667
ORF1ab/nsp3171G171VgGtgTt11B.1.1570.002985
ORF1ab/nsp3171G171DgGtgAt11B.1.1600.000031
ORF1ab/nsp3171G171RGgtCgt11B.1.1600.000031
ORF1ab/nsp3171G171SGgtAgt11B.1.1770.000013
ORF1ab/nsp3171G171SGgtAgt11B.1.177.170.000821
ORF1ab/nsp3171G171delGGT---11B.1.177.210.000076
ORF1ab/nsp3171G171SGgtAgt11B.1.177.40.000211
ORF1ab/nsp3171G171DgGtgAt11B.1.177.400.005155
ORF1ab/nsp3171G171VgGtgTt11B.1.177.500.004695
ORF1ab/nsp3171G171VgGtgTt11B.1.177.530.002392
ORF1ab/nsp3171G171SGgtAgt11B.1.177.600.000218
ORF1ab/nsp3171G171VgGtgTt11B.1.177.750.001041
ORF1ab/nsp3171G171NGGtAAt11B.1.177.770.000726
ORF1ab/nsp3171G171delGGT---11B.1.177.80.000752
ORF1ab/nsp3171G171SGgtAgt11B.1.177.810.000189
ORF1ab/nsp3171G171delGGT---11B.1.177.830.001481
ORF1ab/nsp3171G171delGGT---11B.1.177.860.000183
ORF1ab/nsp3171G171del1Ggt-gt11B.1.20.000009
ORF1ab/nsp3171G171GggTggC11B.1.20.000009
ORF1ab/nsp3171G171delGGT---11B.1.2100.002132
ORF1ab/nsp3171G171DgGtgAt11B.1.2340.000132
ORF1ab/nsp3171G171CGgtTgt11B.1.258.170.000104
ORF1ab/nsp3171G171VgGtgTt11B.1.258.170.000104
ORF1ab/nsp3171G171VgGtgTt11B.1.2600.003344
ORF1ab/nsp3171G171VgGtgTt11B.1.3050.002151
ORF1ab/nsp3171G171VgGtgTt11B.1.3110.000275
ORF1ab/nsp3171G171VgGtgTt11B.1.3360.002439
ORF1ab/nsp3171G171VgGtgTt11B.1.3500.002933
ORF1ab/nsp3171G171SGgtAgt11B.1.3510.00003
ORF1ab/nsp3171G171delGGT---11B.1.3510.00003
ORF1ab/nsp3171G171CGgtTgt11B.1.36.10.00114
ORF1ab/nsp3171G171VgGtgTt11B.1.36.170.000494
ORF1ab/nsp3171G171VgGtgTt11B.1.36.220.001208
ORF1ab/nsp3171G171VgGtgTt11B.1.36.290.000517
ORF1ab/nsp3171G171VgGtgTt11B.1.36.80.001
ORF1ab/nsp3171G171GggTggC11B.1.3690.000285
ORF1ab/nsp3171G171VgGtgTt11B.1.3700.008
ORF1ab/nsp3171G171SGgtAgt11B.1.3960.000706
ORF1ab/nsp3171G171DgGtgAt11B.1.4040.001302
ORF1ab/nsp3171G171DgGtgAt11B.1.4230.010204
ORF1ab/nsp3171G171CGgtTgt11B.1.4270.00005
ORF1ab/nsp3171G171delGGT---11B.1.4290.000024
ORF1ab/nsp3171G171VgGtgTt11B.1.4290.000024
ORF1ab/nsp3171G171VgGtgTt11B.1.4360.001029
ORF1ab/nsp3171G171CGgtTgt11B.1.440.008333
ORF1ab/nsp3171G171GggTggC11B.1.4590.004082
ORF1ab/nsp3171G171VgGtgTt11B.1.466.20.000391
ORF1ab/nsp3171G171AgGtgCt11B.1.466.20.000391
ORF1ab/nsp3171G171VgGtgTt11B.1.5090.000866
ORF1ab/nsp3171G171SGgtAgt11B.1.5450.014493
ORF1ab/nsp3171G171GggTggC11B.1.5510.00129
ORF1ab/nsp3171G171VgGtgTt11B.1.5640.000426
ORF1ab/nsp3171G171GggTggC11B.1.5960.000087
ORF1ab/nsp3171G171VgGtgTt11B.1.6090.000479
ORF1ab/nsp3171G171DgGtgAt11B.1.617.10.000129
ORF1ab/nsp3171G171delGGT---11B.1.617.20.000004
ORF1ab/nsp3171G171KGGTAAA11B.1.617.20.000004
ORF1ab/nsp3171G171DgGtgAt11B.1.6200.000946
ORF1ab/nsp3171G171delGGT---11B.1.6210.000089
ORF1ab/nsp3171G171GggTggC11B.1.6210.000089
ORF1ab/nsp3171G171GggTggC11B.1.6280.000352
ORF1ab/nsp3171G171VgGtgTt11B.1.6290.013333
ORF1ab/nsp3171G171VgGtgTt11B.1.9.50.005682
ORF1ab/nsp3171G171GggTggC11B.290.003509
ORF1ab/nsp3171G171AgGtgCt11B.310.003731
ORF1ab/nsp3171G171delGGT---11B.340.013699
ORF1ab/nsp3171G171CGgtTgt11B.4.50.011905
ORF1ab/nsp3171G171GggTggC11B.400.000364
ORF1ab/nsp3171G171VgGtgTt11B.60.00091
ORF1ab/nsp3171G171VgGtgTt11C.160.00106
ORF1ab/nsp3171G171delGGT---11C.170.055556
ORF1ab/nsp3171G171CGgtTgt11C.37.10.002618
ORF1ab/nsp3171G171DgGtgAt11P.1.120.000484
ORF1ab/nsp3171G171VgGtgTt11P.1.120.000484
ORF1ab/nsp3171G171SGgtAgt11P.1.120.000484
ORF1ab/nsp3171G171CGgtTgt11P.1.130.000898
ORF1ab/nsp3171G171CGgtTgt11P.1.140.000048
ORF1ab/nsp3171G171VgGtgTt11P.1.170.000162
ORF1ab/nsp3171G171CGgtTgt11P.20.000187
ORF1ab/nsp3171G171DgGtgAt11P.20.000187
ORF1ab/nsp3171G171CGgtTgt11Q.10.000126
ORF1ab/nsp3171G171CGgtTgt11Q.30.000145
ORF1ab/nsp3171G171VgGtgTt11Q.80.000165
ORF1ab/nsp3171G171delGGT---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.