CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1709 | L1709L | L2527L | syn | Ctg | Ttg | 3492 | 3013 | 0.862829 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709L | L2527L | syn | ctG | ctA | 3492 | 345 | 0.0987973 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709L | L2527L | syn | ctG | ctT | 3492 | 134 | 0.0383734 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709M | L2527M | nonsyn | Ctg | Atg | 255 | 255 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709del | L2527del | del | CTG | --- | 97 | 97 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709Q | L2527Q | nonsyn | cTg | cAg | 12 | 12 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709P | L2527P | nonsyn | cTg | cCg | 6 | 6 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709V | L2527V | nonsyn | Ctg | Gtg | 5 | 5 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709del1 | L2527del1 | del | cTg | c-g | 5 | 3 | 0.6 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709del1 | L2527del1 | del | ctG | ct- | 5 | 2 | 0.4 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709X | L2527X | nonsyn | CTg | TAg | 4 | 4 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709A | L2527A | nonsyn | CTG | GCC | 2 | 2 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709R | L2527R | nonsyn | CTg | AGg | 2 | 1 | 0.5 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709R | L2527R | nonsyn | cTg | cGg | 2 | 1 | 0.5 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709F | L2527F | nonsyn | CtG | TtT | 1 | 1 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709H | L2527H | nonsyn | cTG | cAT | 1 | 1 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709I | L2527I | nonsyn | CtG | AtC | 1 | 1 | 1 | 7844-7846 |
ORF1ab/nsp3 | 1709 | L1709Y | L2527Y | nonsyn | CTG | TAT | 1 | 1 | 1 | 7844-7846 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3013 | 3492 | All | 0.000576 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 345 | 3492 | All | 0.000066 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 134 | 3492 | All | 0.000026 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 610 | 610 | B.1.258.16 | 0.998363 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 362 | 362 | B.1.258 | 0.02409 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 275 | 296 | B.1.617.2 | 0.001035 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 18 | 296 | B.1.617.2 | 0.000068 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 3 | 296 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 268 | 286 | AY.100 | 0.01233 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 18 | 286 | AY.100 | 0.000828 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 232 | 278 | B.1.1.7 | 0.000208 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 36 | 278 | B.1.1.7 | 0.000032 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 10 | 278 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 255 | 255 | All | 0.000049 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 251 | 251 | B.1.1.303 | 0.69337 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 242 | 242 | B.1.1.306 | 0.106094 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 194 | 194 | AY.3 | 0.00193 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 126 | 127 | AY.103 | 0.000782 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 127 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 106 | 108 | B.1.2 | 0.000933 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 108 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 108 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 97 | 97 | All | 0.000019 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 73 | 73 | B.1.1.7 | 0.000065 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 72 | 72 | AY.43 | 0.000319 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 59 | 71 | AY.4 | 0.000092 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 8 | 71 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 4 | 71 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 56 | 56 | AY.4.2 | 0.001215 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 39 | 48 | B.1 | 0.000357 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 6 | 48 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 3 | 48 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 32 | 40 | AY.25 | 0.000192 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 5 | 40 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 3 | 40 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 39 | 40 | B.1.221 | 0.00277 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 40 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 17 | 36 | B.1.1 | 0.000308 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 13 | 36 | B.1.1 | 0.000236 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 6 | 36 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 32 | 32 | B.1.538 | 0.258065 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 31 | 31 | B.1.1.284 | 0.003329 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 24 | 24 | AY.36 | 0.003557 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 19 | 19 | AY.116 | 0.005449 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 17 | 19 | B.1.177 | 0.000224 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 19 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 18 | 18 | AY.20 | 0.0007 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 17 | 17 | B.1.210 | 0.036247 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 8 | 16 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 8 | 16 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 12 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 12 | 12 | R.1 | 0.00108 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 10 | 11 | AY.119 | 0.000353 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 11 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 8 | 10 | AY.54 | 0.000763 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 2 | 10 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 7 | 9 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 9 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 9 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 9 | 9 | B.1.497 | 0.002833 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 7 | 8 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 8 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 6 | 8 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 2 | 8 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 4 | 7 | 0.222222 | |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 7 | 0.166667 | |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 4 | 6 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 2 | 6 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 6 | 6 | B.1.448 | 0.015748 |
ORF1ab/nsp3 | 1709 | L1709V | Ctg | Gtg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1709 | L1709del1 | cTg | c-g | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1709 | L1709del1 | ctG | ct- | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 5 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 2 | 5 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1709 | L1709V | Ctg | Gtg | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1709 | L1709X | CTg | TAg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 4 | 4 | B.1.1.153 | 0.004381 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 4 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 4 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 4 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1709 | L1709X | CTg | TAg | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 3 | 3 | 0.166667 | |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 3 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 3 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709del1 | ctG | ct- | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1709 | L1709del1 | cTg | c-g | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 3 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 3 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 3 | 3 | B.1.298 | 0.006342 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AE.6 | 0.076923 |
ORF1ab/nsp3 | 1709 | L1709A | CTG | GCC | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709R | CTg | AGg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709R | cTg | cGg | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.50 | 0.001599 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 2 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 2 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 2 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 2 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1709 | L1709F | CtG | TtT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1709 | L1709Y | CTG | TAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1709 | L1709H | cTG | cAT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp3 | 1709 | L1709I | CtG | AtC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709H | cTG | cAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709Y | CTG | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709F | CtG | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1709 | L1709del1 | cTg | c-g | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1709 | L1709del1 | cTg | c-g | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1709 | L1709A | CTG | GCC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1709 | L1709X | CTg | TAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709I | CtG | AtC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1709 | L1709P | cTg | cCg | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1709 | L1709Q | cTg | cAg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 1709 | L1709R | CTg | AGg | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctA | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1709 | L1709A | CTG | GCC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1709 | L1709L | ctG | ctT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1709 | L1709del | CTG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1709 | L1709R | cTg | cGg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1709 | L1709M | Ctg | Atg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1709 | L1709L | Ctg | Ttg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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