CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1705

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1705	N1705N	N2523N	syn	aaC	aaT	11058	11058	1	7832-7834
ORF1ab/nsp3	1705	N1705T	N2523T	nonsyn	aAc	aCc	2750	2741	0.996727	7832-7834
ORF1ab/nsp3	1705	N1705T	N2523T	nonsyn	aAC	aCT	2750	8	0.00290909	7832-7834
ORF1ab/nsp3	1705	N1705T	N2523T	nonsyn	aAC	aCA	2750	1	0.000363636	7832-7834
ORF1ab/nsp3	1705	N1705S	N2523S	nonsyn	AAC	TCT	282	194	0.687943	7832-7834
ORF1ab/nsp3	1705	N1705S	N2523S	nonsyn	aAc	aGc	282	81	0.287234	7832-7834
ORF1ab/nsp3	1705	N1705S	N2523S	nonsyn	AAc	TCc	282	7	0.0248227	7832-7834
ORF1ab/nsp3	1705	N1705del	N2523del	del	AAC	---	97	97	1	7832-7834
ORF1ab/nsp3	1705	N1705K	N2523K	nonsyn	aaC	aaA	53	51	0.962264	7832-7834
ORF1ab/nsp3	1705	N1705K	N2523K	nonsyn	aaC	aaG	53	2	0.0377358	7832-7834
ORF1ab/nsp3	1705	N1705D	N2523D	nonsyn	Aac	Gac	31	31	1	7832-7834
ORF1ab/nsp3	1705	N1705Y	N2523Y	nonsyn	Aac	Tac	21	13	0.619048	7832-7834
ORF1ab/nsp3	1705	N1705Y	N2523Y	nonsyn	AaC	TaT	21	8	0.380952	7832-7834
ORF1ab/nsp3	1705	N1705I	N2523I	nonsyn	aAc	aTc	6	5	0.833333	7832-7834
ORF1ab/nsp3	1705	N1705X	N2523X	nonsyn	AaC	TaA	6	5	0.833333	7832-7834
ORF1ab/nsp3	1705	N1705del1	N2523del1	del	AAc	-Gc	6	2	0.333333	7832-7834
ORF1ab/nsp3	1705	N1705del1	N2523del1	del	Aac	-ac	6	2	0.333333	7832-7834
ORF1ab/nsp3	1705	N1705I	N2523I	nonsyn	aAC	aTA	6	1	0.166667	7832-7834
ORF1ab/nsp3	1705	N1705del1	N2523del1	del	AAc	-Wc	6	1	0.166667	7832-7834
ORF1ab/nsp3	1705	N1705del1	N2523del1	del	aaC	aa-	6	1	0.166667	7832-7834
ORF1ab/nsp3	1705	N1705X	N2523X	nonsyn	AAC	TGA	6	1	0.166667	7832-7834
ORF1ab/nsp3	1705	N1705Q	N2523Q	nonsyn	AaC	CaG	4	4	1	7832-7834
ORF1ab/nsp3	1705	N1705F	N2523F	nonsyn	AAc	TTc	1	1	1	7832-7834
ORF1ab/nsp3	1705	N1705L	N2523L	nonsyn	AAC	TTA	1	1	1	7832-7834
ORF1ab/nsp3	1705	N1705C	N2523C	nonsyn	AAC	TGT	1	1	1	7832-7834

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1705	N1705N	aaC	aaT	11058	11058	All	0.002115
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2741	2750	All	0.000524
ORF1ab/nsp3	1705	N1705T	aAC	aCT	8	2750	All	0.000002
ORF1ab/nsp3	1705	N1705T	aAC	aCA	1	2750	All	0
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2521	2522	B.1.243	0.175423
ORF1ab/nsp3	1705	N1705T	aAC	aCT	1	2522	B.1.243	0.00007
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1683	1683	B.1.1.7	0.001507
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1251	1251	B.1.577	0.859794
ORF1ab/nsp3	1705	N1705N	aaC	aaT	994	994	AY.4	0.001547
ORF1ab/nsp3	1705	N1705N	aaC	aaT	596	596	B.1.177	0.007848
ORF1ab/nsp3	1705	N1705N	aaC	aaT	506	506	B.1.474	0.961977
ORF1ab/nsp3	1705	N1705N	aaC	aaT	416	416	P.1	0.006554
ORF1ab/nsp3	1705	N1705N	aaC	aaT	386	386	B.1.617.2	0.001453
ORF1ab/nsp3	1705	N1705N	aaC	aaT	342	342	B.1.1.222	0.069767
ORF1ab/nsp3	1705	N1705S	AAC	TCT	194	282	All	0.000037
ORF1ab/nsp3	1705	N1705S	aAc	aGc	81	282	All	0.000015
ORF1ab/nsp3	1705	N1705S	AAc	TCc	7	282	All	0.000001
ORF1ab/nsp3	1705	N1705N	aaC	aaT	281	281	B.1.2	0.002474
ORF1ab/nsp3	1705	N1705N	aaC	aaT	265	265	B.1.179	0.996241
ORF1ab/nsp3	1705	N1705N	aaC	aaT	258	258	AY.25	0.001552
ORF1ab/nsp3	1705	N1705N	aaC	aaT	256	256	AY.44	0.001558
ORF1ab/nsp3	1705	N1705N	aaC	aaT	207	207	B.1.427	0.010453
ORF1ab/nsp3	1705	N1705S	AAC	TCT	187	196	AY.4	0.000291
ORF1ab/nsp3	1705	N1705S	AAc	TCc	5	196	AY.4	0.000008
ORF1ab/nsp3	1705	N1705S	aAc	aGc	4	196	AY.4	0.000006
ORF1ab/nsp3	1705	N1705N	aaC	aaT	195	195	B.1.1	0.003537
ORF1ab/nsp3	1705	N1705N	aaC	aaT	172	172	B.1	0.001575
ORF1ab/nsp3	1705	N1705N	aaC	aaT	171	171	B.1.620	0.161779
ORF1ab/nsp3	1705	N1705N	aaC	aaT	156	156	AY.6	0.006416
ORF1ab/nsp3	1705	N1705N	aaC	aaT	142	142	AY.43	0.000629
ORF1ab/nsp3	1705	N1705N	aaC	aaT	136	136	AY.3	0.001353
ORF1ab/nsp3	1705	N1705N	aaC	aaT	133	133	B.1.177.44	0.069019
ORF1ab/nsp3	1705	N1705T	aAc	aCc	126	126	B.1	0.001154
ORF1ab/nsp3	1705	N1705N	aaC	aaT	116	116	B.1.429	0.002729
ORF1ab/nsp3	1705	N1705N	aaC	aaT	114	114	P.1.16	0.042649
ORF1ab/nsp3	1705	N1705N	aaC	aaT	102	102	B.1.351	0.003032
ORF1ab/nsp3	1705	N1705N	aaC	aaT	102	102	P.1.10	0.027486
ORF1ab/nsp3	1705	N1705del	AAC	---	97	97	All	0.000019
ORF1ab/nsp3	1705	N1705N	aaC	aaT	85	85	AY.103	0.000528
ORF1ab/nsp3	1705	N1705N	aaC	aaT	63	63	B.1.177.39	0.969231
ORF1ab/nsp3	1705	N1705N	aaC	aaT	61	61	AY.29	0.000962
ORF1ab/nsp3	1705	N1705N	aaC	aaT	57	57	B.1.596	0.004967
ORF1ab/nsp3	1705	N1705K	aaC	aaA	51	53	All	0.00001
ORF1ab/nsp3	1705	N1705K	aaC	aaG	2	53	All	0
ORF1ab/nsp3	1705	N1705N	aaC	aaT	52	52	B.1.311	0.014278
ORF1ab/nsp3	1705	N1705N	aaC	aaT	52	52	B.1.595	0.01357
ORF1ab/nsp3	1705	N1705N	aaC	aaT	49	49	AY.92	0.014076
ORF1ab/nsp3	1705	N1705T	aAc	aCc	48	48	B.1.1.466	0.417391
ORF1ab/nsp3	1705	N1705N	aaC	aaT	44	44	B.1.525	0.004979
ORF1ab/nsp3	1705	N1705N	aaC	aaT	43	43	B.1.160	0.001341
ORF1ab/nsp3	1705	N1705del	AAC	---	42	42	B.1.1.7	0.000038
ORF1ab/nsp3	1705	N1705N	aaC	aaT	37	37	B.1.1.302	0.076763
ORF1ab/nsp3	1705	N1705N	aaC	aaT	37	37	B.1.1.432	0.046835
ORF1ab/nsp3	1705	N1705N	aaC	aaT	35	35	AY.102	0.000928
ORF1ab/nsp3	1705	N1705N	aaC	aaT	33	33	AY.120.1	0.010594
ORF1ab/nsp3	1705	N1705N	aaC	aaT	33	33	B.1.1.519	0.00131
ORF1ab/nsp3	1705	N1705N	aaC	aaT	33	33	B.1.177.62	0.039333
ORF1ab/nsp3	1705	N1705D	Aac	Gac	31	31	All	0.000006
ORF1ab/nsp3	1705	N1705N	aaC	aaT	30	30	AY.119	0.001059
ORF1ab/nsp3	1705	N1705N	aaC	aaT	30	30	C.35	0.02322
ORF1ab/nsp3	1705	N1705N	aaC	aaT	30	30	P.2	0.005599
ORF1ab/nsp3	1705	N1705S	aAc	aGc	28	28	B.1.2	0.000247
ORF1ab/nsp3	1705	N1705N	aaC	aaT	28	28	B.1.258.17	0.002911
ORF1ab/nsp3	1705	N1705N	aaC	aaT	27	27	AY.19	0.030787
ORF1ab/nsp3	1705	N1705N	aaC	aaT	26	26	AY.42	0.001046
ORF1ab/nsp3	1705	N1705N	aaC	aaT	25	25	AY.20	0.000972
ORF1ab/nsp3	1705	N1705N	aaC	aaT	23	23	B.1.587	0.043643
ORF1ab/nsp3	1705	N1705N	aaC	aaT	22	22	AY.4.2	0.000477
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	13	21	All	0.000002
ORF1ab/nsp3	1705	N1705Y	AaC	TaT	8	21	All	0.000002
ORF1ab/nsp3	1705	N1705N	aaC	aaT	21	21	AY.105	0.013505
ORF1ab/nsp3	1705	N1705N	aaC	aaT	20	20	AY.23	0.001395
ORF1ab/nsp3	1705	N1705N	aaC	aaT	20	20	B.1.526	0.00047
ORF1ab/nsp3	1705	N1705N	aaC	aaT	19	19	AY.34	0.001842
ORF1ab/nsp3	1705	N1705N	aaC	aaT	19	19	AY.84	0.008311
ORF1ab/nsp3	1705	N1705N	aaC	aaT	19	19	B.1.1.214	0.001054
ORF1ab/nsp3	1705	N1705N	aaC	aaT	19	19	B.1.621	0.001682
ORF1ab/nsp3	1705	N1705N	aaC	aaT	17	17	AY.26	0.000481
ORF1ab/nsp3	1705	N1705N	aaC	aaT	16	16	AY.113	0.002278
ORF1ab/nsp3	1705	N1705N	aaC	aaT	16	16	AY.118	0.001002
ORF1ab/nsp3	1705	N1705N	aaC	aaT	16	16	AY.39	0.000395
ORF1ab/nsp3	1705	N1705N	aaC	aaT	16	16	B.1.1.434	0.005577
ORF1ab/nsp3	1705	N1705K	aaC	aaA	15	16	B.1.1.7	0.000013
ORF1ab/nsp3	1705	N1705K	aaC	aaG	1	16	B.1.1.7	0.000001
ORF1ab/nsp3	1705	N1705N	aaC	aaT	16	16	B.1.177.79	0.037471
ORF1ab/nsp3	1705	N1705N	aaC	aaT	16	16	B.1.221	0.001137
ORF1ab/nsp3	1705	N1705N	aaC	aaT	15	15	AY.45	0.001825
ORF1ab/nsp3	1705	N1705N	aaC	aaT	15	15	AY.98.1	0.000726
ORF1ab/nsp3	1705	N1705N	aaC	aaT	15	15	B.1.1.274	0.075758
ORF1ab/nsp3	1705	N1705N	aaC	aaT	15	15	B.1.177.46	0.013774
ORF1ab/nsp3	1705	N1705N	aaC	aaT	15	15	B.1.177.60	0.003277
ORF1ab/nsp3	1705	N1705N	aaC	aaT	14	14	AY.39.1	0.000555
ORF1ab/nsp3	1705	N1705N	aaC	aaT	14	14	AY.61	0.001467
ORF1ab/nsp3	1705	N1705N	aaC	aaT	14	14	Q.8	0.002309
ORF1ab/nsp3	1705	N1705N	aaC	aaT	13	13	A.2.5	0.006487
ORF1ab/nsp3	1705	N1705N	aaC	aaT	13	13	AY.47	0.000404
ORF1ab/nsp3	1705	N1705N	aaC	aaT	13	13	B.1.160.16	0.012082
ORF1ab/nsp3	1705	N1705N	aaC	aaT	13	13	B.1.213	0.19403
ORF1ab/nsp3	1705	N1705N	aaC	aaT	13	13	B.1.499	0.013655
ORF1ab/nsp3	1705	N1705N	aaC	aaT	13	13	P.1.14	0.000621
ORF1ab/nsp3	1705	N1705N	aaC	aaT	12	12	AY.100	0.000552
ORF1ab/nsp3	1705	N1705N	aaC	aaT	12	12	B.1.240	0.002587
ORF1ab/nsp3	1705	N1705S	AAC	TCT	6	12	B.1.617.2	0.000023
ORF1ab/nsp3	1705	N1705S	aAc	aGc	4	12	B.1.617.2	0.000015
ORF1ab/nsp3	1705	N1705S	AAc	TCc	2	12	B.1.617.2	0.000008
ORF1ab/nsp3	1705	N1705N	aaC	aaT	11	11	AY.2	0.003917
ORF1ab/nsp3	1705	N1705Y	AaC	TaT	5	10	AY.4	0.000008
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	5	10	AY.4	0.000008
ORF1ab/nsp3	1705	N1705T	aAC	aCT	5	10	AY.4	0.000008
ORF1ab/nsp3	1705	N1705T	aAc	aCc	5	10	AY.4	0.000008
ORF1ab/nsp3	1705	N1705N	aaC	aaT	10	10	AY.5	0.000206
ORF1ab/nsp3	1705	N1705N	aaC	aaT	10	10	B.1.1.207	0.01182
ORF1ab/nsp3	1705	N1705N	aaC	aaT	10	10	B.1.1.265	0.031546
ORF1ab/nsp3	1705	N1705N	aaC	aaT	10	10	B.1.1.54	0.030211
ORF1ab/nsp3	1705	N1705N	aaC	aaT	10	10	B.1.258	0.000665
ORF1ab/nsp3	1705	N1705N	aaC	aaT	10	10	C.37	0.001161
ORF1ab/nsp3	1705	N1705N	aaC	aaT	9	9	AY.120	0.000335
ORF1ab/nsp3	1705	N1705N	aaC	aaT	9	9	AY.14	0.000792
ORF1ab/nsp3	1705	N1705N	aaC	aaT	9	9	AY.75.1	0.001623
ORF1ab/nsp3	1705	N1705N	aaC	aaT	9	9	AY.9.2	0.000331
ORF1ab/nsp3	1705	N1705N	aaC	aaT	9	9	AY.98	0.000711
ORF1ab/nsp3	1705	N1705N	aaC	aaT	9	9	B.1.243	0.000626
ORF1ab/nsp3	1705	N1705N	aaC	aaT	8	8	AY.35	0.001864
ORF1ab/nsp3	1705	N1705S	aAc	aGc	7	8	AY.43	0.000031
ORF1ab/nsp3	1705	N1705S	AAC	TCT	1	8	AY.43	0.000004
ORF1ab/nsp3	1705	N1705N	aaC	aaT	8	8	AY.46	0.000833
ORF1ab/nsp3	1705	N1705N	aaC	aaT	8	8	AY.46.6	0.000578
ORF1ab/nsp3	1705	N1705N	aaC	aaT	8	8	AY.75	0.000448
ORF1ab/nsp3	1705	N1705N	aaC	aaT	8	8	B.1.438.1	0.000858
ORF1ab/nsp3	1705	N1705del	AAC	---	8	8	B.1.617.2	0.00003
ORF1ab/nsp3	1705	N1705N	aaC	aaT	7	7	AY.12	0.002212
ORF1ab/nsp3	1705	N1705N	aaC	aaT	7	7	AY.3.1	0.000597
ORF1ab/nsp3	1705	N1705S	aAc	aGc	7	7	AY.44	0.000043
ORF1ab/nsp3	1705	N1705N	aaC	aaT	7	7	B.1.1.39	0.003568
ORF1ab/nsp3	1705	N1705N	aaC	aaT	7	7	B.1.177.81	0.001325
ORF1ab/nsp3	1705	N1705N	aaC	aaT	7	7	B.1.234	0.000924
ORF1ab/nsp3	1705	N1705K	aaC	aaA	7	7	B.1.617.2	0.000026
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	A.19	0.056604
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	A.27	0.009934
ORF1ab/nsp3	1705	N1705I	aAc	aTc	5	6	All	0.000001
ORF1ab/nsp3	1705	N1705X	AaC	TaA	5	6	All	0.000001
ORF1ab/nsp3	1705	N1705del1	Aac	-ac	2	6	All	0
ORF1ab/nsp3	1705	N1705del1	AAc	-Gc	2	6	All	0
ORF1ab/nsp3	1705	N1705del1	AAc	-Wc	1	6	All	0
ORF1ab/nsp3	1705	N1705del1	aaC	aa-	1	6	All	0
ORF1ab/nsp3	1705	N1705I	aAC	aTA	1	6	All	0
ORF1ab/nsp3	1705	N1705X	AAC	TGA	1	6	All	0
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	AY.106	0.002009
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	AY.110	0.000676
ORF1ab/nsp3	1705	N1705D	Aac	Gac	6	6	AY.16	0.002278
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	AY.54	0.000572
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	AY.62	0.002614
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	AY.64	0.003571
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	B.1.1.186	0.020619
ORF1ab/nsp3	1705	N1705N	aaC	aaT	6	6	B.1.1.263	0.009346
ORF1ab/nsp3	1705	N1705K	aaC	aaA	5	5	AY.100	0.00023
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	AY.109	0.003698
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	AY.33	0.000334
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	AY.34.1	0.00255
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	AY.74	0.000578
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.1.521	0.026738
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.1.523	0.007812
ORF1ab/nsp3	1705	N1705S	aAc	aGc	5	5	B.1.1.7	0.000004
ORF1ab/nsp3	1705	N1705T	aAc	aCc	5	5	B.1.2	0.000044
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.284	0.065789
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.36	0.00073
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.36.29	0.002587
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.36.36	0.00301
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	B.1.617.1	0.000645
ORF1ab/nsp3	1705	N1705T	aAc	aCc	3	5	B.1.617.2	0.000011
ORF1ab/nsp3	1705	N1705T	aAC	aCT	2	5	B.1.617.2	0.000008
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	P.1.12	0.00242
ORF1ab/nsp3	1705	N1705N	aaC	aaT	5	5	R.1	0.00045
ORF1ab/nsp3	1705	N1705K	aaC	aaA	4	4		0.222222
ORF1ab/nsp3	1705	N1705Q	AaC	CaG	4	4		0.222222
ORF1ab/nsp3	1705	N1705Q	AaC	CaG	4	4	All	0.000001
ORF1ab/nsp3	1705	N1705D	Aac	Gac	4	4	AY.4	0.000006
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	AY.4.5	0.00043
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	AY.99.2	0.000369
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B	0.000511
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.1.25	0.002274
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.1.317	0.001647
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.1.385	0.017857
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.1.464	0.005891
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.177.6	0.003906
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.36.21	0.008639
ORF1ab/nsp3	1705	N1705Y	AaC	TaT	2	4	B.1.617.2	0.000008
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	2	4	B.1.617.2	0.000008
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	B.1.637	0.000292
ORF1ab/nsp3	1705	N1705N	aaC	aaT	4	4	D.2	0.0003
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.114	0.000693
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.117	0.000254
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.120.2.1	0.001495
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.24	0.001293
ORF1ab/nsp3	1705	N1705S	aAc	aGc	3	3	AY.25	0.000018
ORF1ab/nsp3	1705	N1705S	aAc	aGc	3	3	AY.30	0.001187
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.30	0.001187
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.38	0.001498
ORF1ab/nsp3	1705	N1705S	aAc	aGc	3	3	AY.39	0.000074
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.4.4	0.001227
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.40	0.002893
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.46.4	0.000494
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.5.3	0.001012
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.56	0.004815
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.87	0.002498
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	AY.94	0.001328
ORF1ab/nsp3	1705	N1705X	AaC	TaA	2	3	B.1.1	0.000036
ORF1ab/nsp3	1705	N1705X	AAC	TGA	1	3	B.1.1	0.000018
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.1.243	0.012245
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.1.28	0.000934
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.1.291	0.002227
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.1.33	0.001263
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.1.526	0.010638
ORF1ab/nsp3	1705	N1705D	Aac	Gac	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.110.3	0.002155
ORF1ab/nsp3	1705	N1705K	aaC	aaA	3	3	B.1.2	0.000026
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.36.16	0.004274
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.391	0.003382
ORF1ab/nsp3	1705	N1705T	aAc	aCc	3	3	B.1.596	0.000261
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.623	0.001609
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	B.1.628	0.001057
ORF1ab/nsp3	1705	N1705D	Aac	Gac	3	3	C.36	0.002732
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	N.5	0.0053
ORF1ab/nsp3	1705	N1705D	Aac	Gac	3	3	P.1.14	0.000143
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	P.1.7	0.000958
ORF1ab/nsp3	1705	N1705N	aaC	aaT	3	3	Q.3	0.000435
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2		0.111111
ORF1ab/nsp3	1705	N1705X	AaC	TaA	2	2		0.111111
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	2	2		0.111111
ORF1ab/nsp3	1705	N1705I	aAc	aTc	1	2		0.055556
ORF1ab/nsp3	1705	N1705I	aAC	aTA	1	2		0.055556
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AP.1	0.003003
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.116	0.000574
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	AY.119	0.000071
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	AY.120	0.000074
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.13	0.000322
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.16.1	0.00094
ORF1ab/nsp3	1705	N1705K	aaC	aaA	2	2	AY.3	0.00002
ORF1ab/nsp3	1705	N1705S	aAc	aGc	2	2	AY.33	0.000134
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.39.1.1	0.001449
ORF1ab/nsp3	1705	N1705D	Aac	Gac	2	2	AY.4.2	0.000043
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.4.2.1	0.000298
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	AY.43	0.000009
ORF1ab/nsp3	1705	N1705K	aaC	aaA	2	2	AY.43	0.000009
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	AY.44	0.000012
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	AY.46.2	0.001271
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.46.3	0.001867
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.46.5	0.000397
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.58	0.001815
ORF1ab/nsp3	1705	N1705S	aAc	aGc	2	2	AY.59	0.001059
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.69	0.000373
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.7.1	0.000225
ORF1ab/nsp3	1705	N1705K	aaC	aaA	2	2	AY.84	0.000875
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.96	0.004149
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	AY.99	0.002099
ORF1ab/nsp3	1705	N1705S	aAc	aGc	2	2	B	0.000256
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	B.1	0.000018
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	1	2	B.1.1	0.000018
ORF1ab/nsp3	1705	N1705Y	AaC	TaT	1	2	B.1.1	0.000018
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.1	0.000653
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.123	0.035714
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.153	0.002191
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.166	0.066667
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.174	0.006757
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.189	0.003026
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.216	0.001781
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	B.1.1.236	0.013793
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.348	0.001592
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.351	0.005587
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.397	0.004505
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.4	0.005952
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.486	0.003155
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.5	0.016667
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.1.70	0.000682
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	B.1.177	0.000026
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.177.18	0.00232
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.177.31	0.022989
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	B.1.177.57	0.000562
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.177.82	0.000955
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	B.1.199	0.008264
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.214	0.007326
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.214.2	0.001199
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	B.1.234	0.000264
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	B.1.241	0.001623
ORF1ab/nsp3	1705	N1705del	AAC	---	2	2	B.1.258	0.000133
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.258.16	0.003273
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	B.1.311	0.000549
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.36.17	0.000988
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.36.8	0.002
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.362	0.003082
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.369	0.00057
ORF1ab/nsp3	1705	N1705S	aAc	aGc	2	2	B.1.429	0.000047
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.498	0.040816
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.501	0.014706
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.561	0.000794
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.565	0.001621
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.582	0.000981
ORF1ab/nsp3	1705	N1705del1	AAc	-Gc	1	2	B.1.617.2	0.000004
ORF1ab/nsp3	1705	N1705del1	AAc	-Wc	1	2	B.1.617.2	0.000004
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.1.627	0.00404
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.3.1	0.003317
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	B.4	0.004415
ORF1ab/nsp3	1705	N1705D	Aac	Gac	2	2	D.2	0.00015
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	D.5	0.00995
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	P.1	0.000032
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	P.1.15	0.000465
ORF1ab/nsp3	1705	N1705N	aaC	aaT	2	2	P.1.6	0.003891
ORF1ab/nsp3	1705	N1705T	aAc	aCc	2	2	R.1	0.00018
ORF1ab/nsp3	1705	N1705F	AAc	TTc	1	1		0.055556
ORF1ab/nsp3	1705	N1705L	AAC	TTA	1	1		0.055556
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	A	0.000387
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	A.2	0.000662
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	A.2.4	0.003367
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	A.4	0.012821
ORF1ab/nsp3	1705	N1705F	AAc	TTc	1	1	All	0
ORF1ab/nsp3	1705	N1705L	AAC	TTA	1	1	All	0
ORF1ab/nsp3	1705	N1705C	AAC	TGT	1	1	All	0
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AM.4	0.003571
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AW.1	0.003049
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	AY.100	0.000046
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	AY.102	0.000027
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.103	0.000006
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	AY.103	0.000006
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	AY.103	0.000006
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.104	0.001984
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.107	0.000466
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.111	0.000183
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.111	0.000183
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.116.1	0.000311
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	AY.118	0.000063
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.121	0.000135
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.19	0.00114
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.23.1	0.000417
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	AY.26	0.000028
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.27	0.000065
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	1	1	AY.29	0.000016
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.29.1	0.000221
ORF1ab/nsp3	1705	N1705del1	aaC	aa-	1	1	AY.3	0.00001
ORF1ab/nsp3	1705	N1705K	aaC	aaG	1	1	AY.3.1	0.000085
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.33	0.000067
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.36	0.000148
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.39.2	0.001541
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	AY.4	0.000002
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	1705	N1705T	aAC	aCA	1	1	AY.43	0.000004
ORF1ab/nsp3	1705	N1705del1	AAc	-Gc	1	1	AY.44	0.000006
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	AY.44	0.000006
ORF1ab/nsp3	1705	N1705I	aAc	aTc	1	1	AY.46	0.000104
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.46.2	0.000635
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.48	0.000465
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.5	0.000021
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	AY.5	0.000021
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	AY.5.2	0.002463
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.52	0.000814
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.53	0.000288
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.59	0.00053
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.6	0.000041
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.65	0.000533
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.68	0.000274
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.71	0.000475
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.81	0.001992
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.83	0.001724
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.84	0.000437
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.88	0.000884
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.91	0.00073
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AY.93	0.000273
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.99	0.001049
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	AZ.2	0.000821
ORF1ab/nsp3	1705	N1705X	AaC	TaA	1	1	AZ.3	0.00152
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B	0.000128
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	B.1	0.000009
ORF1ab/nsp3	1705	N1705del1	Aac	-ac	1	1	B.1	0.000009
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1705	N1705C	AAC	TGT	1	1	B.1.1	0.000018
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.10	0.001115
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.101	0.01
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.118	0.010204
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.134	0.011364
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	B.1.1.189	0.001513
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.269	0.001353
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.27	0.00565
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.1.298	0.000862
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.308	0.011765
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.316	0.000925
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.333	0.001076
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.354	0.004386
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.358	0.034483
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.363	0.005988
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.377	0.001381
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.391	0.008547
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.411	0.014706
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.1.413	0.006897
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.416	0.000905
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.429	0.004608
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.1.486	0.001577
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.50	0.000679
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.1.528	0.004808
ORF1ab/nsp3	1705	N1705del1	Aac	-ac	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.111	0.001175
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.131	0.008772
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.139	0.000733
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	B.1.14	0.017544
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.157	0.002985
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	1	1	B.1.160.16	0.000929
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.160.22	0.006757
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.160.30	0.002976
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.160.9	0.007194
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.11	0.001698
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.3	0.007634
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.33	0.001645
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.35	0.000691
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.177.6	0.000977
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.75	0.001041
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.76	0.002494
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.86	0.000183
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.179	0.003759
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.189	0.004292
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.195	0.005025
ORF1ab/nsp3	1705	N1705I	aAc	aTc	1	1	B.1.2	0.000009
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.206	0.000816
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.210	0.002132
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.218	0.005155
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.22	0.001318
ORF1ab/nsp3	1705	N1705Y	Aac	Tac	1	1	B.1.221	0.000071
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.221.1	0.002907
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.23	0.006061
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.237	0.004975
ORF1ab/nsp3	1705	N1705I	aAc	aTc	1	1	B.1.243	0.00007
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.243.1	0.022222
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.258.10	0.011364
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.258.14	0.00098
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.258.3	0.001675
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.265	0.001271
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.289	0.00266
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.324	0.001605
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.329	0.000608
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.336	0.002439
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.351.2	0.000303
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.354	0.043478
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.36	0.000146
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.36.18	0.00042
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.36.7	0.004
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.375	0.00082
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.380	0.006623
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.395	0.007042
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.396	0.000706
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.400	0.000429
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.408	0.00369
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	B.1.409	0.000781
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	B.1.427	0.00005
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	B.1.429	0.000024
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.462	0.007246
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.462	0.007246
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.466.2	0.000391
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.468	0.005714
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.473	0.019231
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.497	0.000315
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.509	0.000866
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.517	0.000427
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.545	0.014493
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.567	0.003333
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.575	0.000303
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.575.1	0.002439
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.588	0.00091
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.595	0.000261
ORF1ab/nsp3	1705	N1705I	aAc	aTc	1	1	B.1.609	0.000479
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.609	0.000479
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.1.625	0.002353
ORF1ab/nsp3	1705	N1705T	aAc	aCc	1	1	B.1.631	0.003367
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	B.1.637	0.000073
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.3	0.000831
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.39	0.002331
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	B.6.6	0.000889
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	C.16	0.00106
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	C.36	0.000911
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	C.37.1	0.002618
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	D.3	0.005917
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	P.1	0.000016
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	P.1	0.000016
ORF1ab/nsp3	1705	N1705del	AAC	---	1	1	P.1	0.000016
ORF1ab/nsp3	1705	N1705D	Aac	Gac	1	1	P.1.10	0.000269
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	P.3	0.001595
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	P.7	0.004367
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	Q.7	0.001111
ORF1ab/nsp3	1705	N1705S	aAc	aGc	1	1	Q.8	0.000165
ORF1ab/nsp3	1705	N1705K	aaC	aaA	1	1	Q.8	0.000165
ORF1ab/nsp3	1705	N1705N	aaC	aaT	1	1	Y.1	0.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.