CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1705

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31705N1705NN2523NsynaaCaaT110581105817832-7834
ORF1ab/nsp31705N1705TN2523TnonsynaAcaCc275027410.9967277832-7834
ORF1ab/nsp31705N1705TN2523TnonsynaACaCT275080.002909097832-7834
ORF1ab/nsp31705N1705TN2523TnonsynaACaCA275010.0003636367832-7834
ORF1ab/nsp31705N1705SN2523SnonsynAACTCT2821940.6879437832-7834
ORF1ab/nsp31705N1705SN2523SnonsynaAcaGc282810.2872347832-7834
ORF1ab/nsp31705N1705SN2523SnonsynAAcTCc28270.02482277832-7834
ORF1ab/nsp31705N1705delN2523deldelAAC---979717832-7834
ORF1ab/nsp31705N1705KN2523KnonsynaaCaaA53510.9622647832-7834
ORF1ab/nsp31705N1705KN2523KnonsynaaCaaG5320.03773587832-7834
ORF1ab/nsp31705N1705DN2523DnonsynAacGac313117832-7834
ORF1ab/nsp31705N1705YN2523YnonsynAacTac21130.6190487832-7834
ORF1ab/nsp31705N1705YN2523YnonsynAaCTaT2180.3809527832-7834
ORF1ab/nsp31705N1705IN2523InonsynaAcaTc650.8333337832-7834
ORF1ab/nsp31705N1705XN2523XnonsynAaCTaA650.8333337832-7834
ORF1ab/nsp31705N1705del1N2523del1delAAc-Gc620.3333337832-7834
ORF1ab/nsp31705N1705del1N2523del1delAac-ac620.3333337832-7834
ORF1ab/nsp31705N1705IN2523InonsynaACaTA610.1666677832-7834
ORF1ab/nsp31705N1705del1N2523del1delAAc-Wc610.1666677832-7834
ORF1ab/nsp31705N1705del1N2523del1delaaCaa-610.1666677832-7834
ORF1ab/nsp31705N1705XN2523XnonsynAACTGA610.1666677832-7834
ORF1ab/nsp31705N1705QN2523QnonsynAaCCaG4417832-7834
ORF1ab/nsp31705N1705FN2523FnonsynAAcTTc1117832-7834
ORF1ab/nsp31705N1705LN2523LnonsynAACTTA1117832-7834
ORF1ab/nsp31705N1705CN2523CnonsynAACTGT1117832-7834

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31705N1705NaaCaaT1105811058All0.002115
ORF1ab/nsp31705N1705TaAcaCc27412750All0.000524
ORF1ab/nsp31705N1705TaACaCT82750All0.000002
ORF1ab/nsp31705N1705TaACaCA12750All0
ORF1ab/nsp31705N1705TaAcaCc25212522B.1.2430.175423
ORF1ab/nsp31705N1705TaACaCT12522B.1.2430.00007
ORF1ab/nsp31705N1705NaaCaaT16831683B.1.1.70.001507
ORF1ab/nsp31705N1705NaaCaaT12511251B.1.5770.859794
ORF1ab/nsp31705N1705NaaCaaT994994AY.40.001547
ORF1ab/nsp31705N1705NaaCaaT596596B.1.1770.007848
ORF1ab/nsp31705N1705NaaCaaT506506B.1.4740.961977
ORF1ab/nsp31705N1705NaaCaaT416416P.10.006554
ORF1ab/nsp31705N1705NaaCaaT386386B.1.617.20.001453
ORF1ab/nsp31705N1705NaaCaaT342342B.1.1.2220.069767
ORF1ab/nsp31705N1705SAACTCT194282All0.000037
ORF1ab/nsp31705N1705SaAcaGc81282All0.000015
ORF1ab/nsp31705N1705SAAcTCc7282All0.000001
ORF1ab/nsp31705N1705NaaCaaT281281B.1.20.002474
ORF1ab/nsp31705N1705NaaCaaT265265B.1.1790.996241
ORF1ab/nsp31705N1705NaaCaaT258258AY.250.001552
ORF1ab/nsp31705N1705NaaCaaT256256AY.440.001558
ORF1ab/nsp31705N1705NaaCaaT207207B.1.4270.010453
ORF1ab/nsp31705N1705SAACTCT187196AY.40.000291
ORF1ab/nsp31705N1705SAAcTCc5196AY.40.000008
ORF1ab/nsp31705N1705SaAcaGc4196AY.40.000006
ORF1ab/nsp31705N1705NaaCaaT195195B.1.10.003537
ORF1ab/nsp31705N1705NaaCaaT172172B.10.001575
ORF1ab/nsp31705N1705NaaCaaT171171B.1.6200.161779
ORF1ab/nsp31705N1705NaaCaaT156156AY.60.006416
ORF1ab/nsp31705N1705NaaCaaT142142AY.430.000629
ORF1ab/nsp31705N1705NaaCaaT136136AY.30.001353
ORF1ab/nsp31705N1705NaaCaaT133133B.1.177.440.069019
ORF1ab/nsp31705N1705TaAcaCc126126B.10.001154
ORF1ab/nsp31705N1705NaaCaaT116116B.1.4290.002729
ORF1ab/nsp31705N1705NaaCaaT114114P.1.160.042649
ORF1ab/nsp31705N1705NaaCaaT102102B.1.3510.003032
ORF1ab/nsp31705N1705NaaCaaT102102P.1.100.027486
ORF1ab/nsp31705N1705delAAC---9797All0.000019
ORF1ab/nsp31705N1705NaaCaaT8585AY.1030.000528
ORF1ab/nsp31705N1705NaaCaaT6363B.1.177.390.969231
ORF1ab/nsp31705N1705NaaCaaT6161AY.290.000962
ORF1ab/nsp31705N1705NaaCaaT5757B.1.5960.004967
ORF1ab/nsp31705N1705KaaCaaA5153All0.00001
ORF1ab/nsp31705N1705KaaCaaG253All0
ORF1ab/nsp31705N1705NaaCaaT5252B.1.3110.014278
ORF1ab/nsp31705N1705NaaCaaT5252B.1.5950.01357
ORF1ab/nsp31705N1705NaaCaaT4949AY.920.014076
ORF1ab/nsp31705N1705TaAcaCc4848B.1.1.4660.417391
ORF1ab/nsp31705N1705NaaCaaT4444B.1.5250.004979
ORF1ab/nsp31705N1705NaaCaaT4343B.1.1600.001341
ORF1ab/nsp31705N1705delAAC---4242B.1.1.70.000038
ORF1ab/nsp31705N1705NaaCaaT3737B.1.1.3020.076763
ORF1ab/nsp31705N1705NaaCaaT3737B.1.1.4320.046835
ORF1ab/nsp31705N1705NaaCaaT3535AY.1020.000928
ORF1ab/nsp31705N1705NaaCaaT3333AY.120.10.010594
ORF1ab/nsp31705N1705NaaCaaT3333B.1.1.5190.00131
ORF1ab/nsp31705N1705NaaCaaT3333B.1.177.620.039333
ORF1ab/nsp31705N1705DAacGac3131All0.000006
ORF1ab/nsp31705N1705NaaCaaT3030AY.1190.001059
ORF1ab/nsp31705N1705NaaCaaT3030C.350.02322
ORF1ab/nsp31705N1705NaaCaaT3030P.20.005599
ORF1ab/nsp31705N1705SaAcaGc2828B.1.20.000247
ORF1ab/nsp31705N1705NaaCaaT2828B.1.258.170.002911
ORF1ab/nsp31705N1705NaaCaaT2727AY.190.030787
ORF1ab/nsp31705N1705NaaCaaT2626AY.420.001046
ORF1ab/nsp31705N1705NaaCaaT2525AY.200.000972
ORF1ab/nsp31705N1705NaaCaaT2323B.1.5870.043643
ORF1ab/nsp31705N1705NaaCaaT2222AY.4.20.000477
ORF1ab/nsp31705N1705YAacTac1321All0.000002
ORF1ab/nsp31705N1705YAaCTaT821All0.000002
ORF1ab/nsp31705N1705NaaCaaT2121AY.1050.013505
ORF1ab/nsp31705N1705NaaCaaT2020AY.230.001395
ORF1ab/nsp31705N1705NaaCaaT2020B.1.5260.00047
ORF1ab/nsp31705N1705NaaCaaT1919AY.340.001842
ORF1ab/nsp31705N1705NaaCaaT1919AY.840.008311
ORF1ab/nsp31705N1705NaaCaaT1919B.1.1.2140.001054
ORF1ab/nsp31705N1705NaaCaaT1919B.1.6210.001682
ORF1ab/nsp31705N1705NaaCaaT1717AY.260.000481
ORF1ab/nsp31705N1705NaaCaaT1616AY.1130.002278
ORF1ab/nsp31705N1705NaaCaaT1616AY.1180.001002
ORF1ab/nsp31705N1705NaaCaaT1616AY.390.000395
ORF1ab/nsp31705N1705NaaCaaT1616B.1.1.4340.005577
ORF1ab/nsp31705N1705KaaCaaA1516B.1.1.70.000013
ORF1ab/nsp31705N1705KaaCaaG116B.1.1.70.000001
ORF1ab/nsp31705N1705NaaCaaT1616B.1.177.790.037471
ORF1ab/nsp31705N1705NaaCaaT1616B.1.2210.001137
ORF1ab/nsp31705N1705NaaCaaT1515AY.450.001825
ORF1ab/nsp31705N1705NaaCaaT1515AY.98.10.000726
ORF1ab/nsp31705N1705NaaCaaT1515B.1.1.2740.075758
ORF1ab/nsp31705N1705NaaCaaT1515B.1.177.460.013774
ORF1ab/nsp31705N1705NaaCaaT1515B.1.177.600.003277
ORF1ab/nsp31705N1705NaaCaaT1414AY.39.10.000555
ORF1ab/nsp31705N1705NaaCaaT1414AY.610.001467
ORF1ab/nsp31705N1705NaaCaaT1414Q.80.002309
ORF1ab/nsp31705N1705NaaCaaT1313A.2.50.006487
ORF1ab/nsp31705N1705NaaCaaT1313AY.470.000404
ORF1ab/nsp31705N1705NaaCaaT1313B.1.160.160.012082
ORF1ab/nsp31705N1705NaaCaaT1313B.1.2130.19403
ORF1ab/nsp31705N1705NaaCaaT1313B.1.4990.013655
ORF1ab/nsp31705N1705NaaCaaT1313P.1.140.000621
ORF1ab/nsp31705N1705NaaCaaT1212AY.1000.000552
ORF1ab/nsp31705N1705NaaCaaT1212B.1.2400.002587
ORF1ab/nsp31705N1705SAACTCT612B.1.617.20.000023
ORF1ab/nsp31705N1705SaAcaGc412B.1.617.20.000015
ORF1ab/nsp31705N1705SAAcTCc212B.1.617.20.000008
ORF1ab/nsp31705N1705NaaCaaT1111AY.20.003917
ORF1ab/nsp31705N1705YAaCTaT510AY.40.000008
ORF1ab/nsp31705N1705YAacTac510AY.40.000008
ORF1ab/nsp31705N1705TaACaCT510AY.40.000008
ORF1ab/nsp31705N1705TaAcaCc510AY.40.000008
ORF1ab/nsp31705N1705NaaCaaT1010AY.50.000206
ORF1ab/nsp31705N1705NaaCaaT1010B.1.1.2070.01182
ORF1ab/nsp31705N1705NaaCaaT1010B.1.1.2650.031546
ORF1ab/nsp31705N1705NaaCaaT1010B.1.1.540.030211
ORF1ab/nsp31705N1705NaaCaaT1010B.1.2580.000665
ORF1ab/nsp31705N1705NaaCaaT1010C.370.001161
ORF1ab/nsp31705N1705NaaCaaT99AY.1200.000335
ORF1ab/nsp31705N1705NaaCaaT99AY.140.000792
ORF1ab/nsp31705N1705NaaCaaT99AY.75.10.001623
ORF1ab/nsp31705N1705NaaCaaT99AY.9.20.000331
ORF1ab/nsp31705N1705NaaCaaT99AY.980.000711
ORF1ab/nsp31705N1705NaaCaaT99B.1.2430.000626
ORF1ab/nsp31705N1705NaaCaaT88AY.350.001864
ORF1ab/nsp31705N1705SaAcaGc78AY.430.000031
ORF1ab/nsp31705N1705SAACTCT18AY.430.000004
ORF1ab/nsp31705N1705NaaCaaT88AY.460.000833
ORF1ab/nsp31705N1705NaaCaaT88AY.46.60.000578
ORF1ab/nsp31705N1705NaaCaaT88AY.750.000448
ORF1ab/nsp31705N1705NaaCaaT88B.1.438.10.000858
ORF1ab/nsp31705N1705delAAC---88B.1.617.20.00003
ORF1ab/nsp31705N1705NaaCaaT77AY.120.002212
ORF1ab/nsp31705N1705NaaCaaT77AY.3.10.000597
ORF1ab/nsp31705N1705SaAcaGc77AY.440.000043
ORF1ab/nsp31705N1705NaaCaaT77B.1.1.390.003568
ORF1ab/nsp31705N1705NaaCaaT77B.1.177.810.001325
ORF1ab/nsp31705N1705NaaCaaT77B.1.2340.000924
ORF1ab/nsp31705N1705KaaCaaA77B.1.617.20.000026
ORF1ab/nsp31705N1705NaaCaaT66A.190.056604
ORF1ab/nsp31705N1705NaaCaaT66A.270.009934
ORF1ab/nsp31705N1705IaAcaTc56All0.000001
ORF1ab/nsp31705N1705XAaCTaA56All0.000001
ORF1ab/nsp31705N1705del1Aac-ac26All0
ORF1ab/nsp31705N1705del1AAc-Gc26All0
ORF1ab/nsp31705N1705del1AAc-Wc16All0
ORF1ab/nsp31705N1705del1aaCaa-16All0
ORF1ab/nsp31705N1705IaACaTA16All0
ORF1ab/nsp31705N1705XAACTGA16All0
ORF1ab/nsp31705N1705NaaCaaT66AY.1060.002009
ORF1ab/nsp31705N1705NaaCaaT66AY.1100.000676
ORF1ab/nsp31705N1705DAacGac66AY.160.002278
ORF1ab/nsp31705N1705NaaCaaT66AY.540.000572
ORF1ab/nsp31705N1705NaaCaaT66AY.620.002614
ORF1ab/nsp31705N1705NaaCaaT66AY.640.003571
ORF1ab/nsp31705N1705NaaCaaT66B.1.1.1860.020619
ORF1ab/nsp31705N1705NaaCaaT66B.1.1.2630.009346
ORF1ab/nsp31705N1705KaaCaaA55AY.1000.00023
ORF1ab/nsp31705N1705NaaCaaT55AY.1090.003698
ORF1ab/nsp31705N1705NaaCaaT55AY.330.000334
ORF1ab/nsp31705N1705NaaCaaT55AY.34.10.00255
ORF1ab/nsp31705N1705NaaCaaT55AY.740.000578
ORF1ab/nsp31705N1705NaaCaaT55B.1.1.5210.026738
ORF1ab/nsp31705N1705NaaCaaT55B.1.1.5230.007812
ORF1ab/nsp31705N1705SaAcaGc55B.1.1.70.000004
ORF1ab/nsp31705N1705TaAcaCc55B.1.20.000044
ORF1ab/nsp31705N1705NaaCaaT55B.1.2840.065789
ORF1ab/nsp31705N1705NaaCaaT55B.1.360.00073
ORF1ab/nsp31705N1705NaaCaaT55B.1.36.290.002587
ORF1ab/nsp31705N1705NaaCaaT55B.1.36.360.00301
ORF1ab/nsp31705N1705NaaCaaT55B.1.617.10.000645
ORF1ab/nsp31705N1705TaAcaCc35B.1.617.20.000011
ORF1ab/nsp31705N1705TaACaCT25B.1.617.20.000008
ORF1ab/nsp31705N1705NaaCaaT55P.1.120.00242
ORF1ab/nsp31705N1705NaaCaaT55R.10.00045
ORF1ab/nsp31705N1705KaaCaaA440.222222
ORF1ab/nsp31705N1705QAaCCaG440.222222
ORF1ab/nsp31705N1705QAaCCaG44All0.000001
ORF1ab/nsp31705N1705DAacGac44AY.40.000006
ORF1ab/nsp31705N1705NaaCaaT44AY.4.50.00043
ORF1ab/nsp31705N1705NaaCaaT44AY.99.20.000369
ORF1ab/nsp31705N1705NaaCaaT44B0.000511
ORF1ab/nsp31705N1705NaaCaaT44B.1.1.250.002274
ORF1ab/nsp31705N1705NaaCaaT44B.1.1.3170.001647
ORF1ab/nsp31705N1705NaaCaaT44B.1.1.3850.017857
ORF1ab/nsp31705N1705NaaCaaT44B.1.1.4640.005891
ORF1ab/nsp31705N1705NaaCaaT44B.1.177.60.003906
ORF1ab/nsp31705N1705NaaCaaT44B.1.36.210.008639
ORF1ab/nsp31705N1705YAaCTaT24B.1.617.20.000008
ORF1ab/nsp31705N1705YAacTac24B.1.617.20.000008
ORF1ab/nsp31705N1705NaaCaaT44B.1.6370.000292
ORF1ab/nsp31705N1705NaaCaaT44D.20.0003
ORF1ab/nsp31705N1705NaaCaaT33AY.1140.000693
ORF1ab/nsp31705N1705NaaCaaT33AY.1170.000254
ORF1ab/nsp31705N1705NaaCaaT33AY.120.2.10.001495
ORF1ab/nsp31705N1705NaaCaaT33AY.240.001293
ORF1ab/nsp31705N1705SaAcaGc33AY.250.000018
ORF1ab/nsp31705N1705SaAcaGc33AY.300.001187
ORF1ab/nsp31705N1705NaaCaaT33AY.300.001187
ORF1ab/nsp31705N1705NaaCaaT33AY.380.001498
ORF1ab/nsp31705N1705SaAcaGc33AY.390.000074
ORF1ab/nsp31705N1705NaaCaaT33AY.4.40.001227
ORF1ab/nsp31705N1705NaaCaaT33AY.400.002893
ORF1ab/nsp31705N1705NaaCaaT33AY.46.40.000494
ORF1ab/nsp31705N1705NaaCaaT33AY.5.30.001012
ORF1ab/nsp31705N1705NaaCaaT33AY.560.004815
ORF1ab/nsp31705N1705NaaCaaT33AY.870.002498
ORF1ab/nsp31705N1705NaaCaaT33AY.940.001328
ORF1ab/nsp31705N1705XAaCTaA23B.1.10.000036
ORF1ab/nsp31705N1705XAACTGA13B.1.10.000018
ORF1ab/nsp31705N1705NaaCaaT33B.1.1.2430.012245
ORF1ab/nsp31705N1705NaaCaaT33B.1.1.280.000934
ORF1ab/nsp31705N1705NaaCaaT33B.1.1.2910.002227
ORF1ab/nsp31705N1705NaaCaaT33B.1.1.330.001263
ORF1ab/nsp31705N1705NaaCaaT33B.1.1.5260.010638
ORF1ab/nsp31705N1705DAacGac33B.1.1.70.000003
ORF1ab/nsp31705N1705NaaCaaT33B.1.110.30.002155
ORF1ab/nsp31705N1705KaaCaaA33B.1.20.000026
ORF1ab/nsp31705N1705NaaCaaT33B.1.36.160.004274
ORF1ab/nsp31705N1705NaaCaaT33B.1.3910.003382
ORF1ab/nsp31705N1705TaAcaCc33B.1.5960.000261
ORF1ab/nsp31705N1705NaaCaaT33B.1.6230.001609
ORF1ab/nsp31705N1705NaaCaaT33B.1.6280.001057
ORF1ab/nsp31705N1705DAacGac33C.360.002732
ORF1ab/nsp31705N1705NaaCaaT33N.50.0053
ORF1ab/nsp31705N1705DAacGac33P.1.140.000143
ORF1ab/nsp31705N1705NaaCaaT33P.1.70.000958
ORF1ab/nsp31705N1705NaaCaaT33Q.30.000435
ORF1ab/nsp31705N1705delAAC---220.111111
ORF1ab/nsp31705N1705XAaCTaA220.111111
ORF1ab/nsp31705N1705YAacTac220.111111
ORF1ab/nsp31705N1705IaAcaTc120.055556
ORF1ab/nsp31705N1705IaACaTA120.055556
ORF1ab/nsp31705N1705NaaCaaT22AP.10.003003
ORF1ab/nsp31705N1705NaaCaaT22AY.1160.000574
ORF1ab/nsp31705N1705TaAcaCc22AY.1190.000071
ORF1ab/nsp31705N1705delAAC---22AY.1200.000074
ORF1ab/nsp31705N1705NaaCaaT22AY.130.000322
ORF1ab/nsp31705N1705NaaCaaT22AY.16.10.00094
ORF1ab/nsp31705N1705KaaCaaA22AY.30.00002
ORF1ab/nsp31705N1705SaAcaGc22AY.330.000134
ORF1ab/nsp31705N1705NaaCaaT22AY.39.1.10.001449
ORF1ab/nsp31705N1705DAacGac22AY.4.20.000043
ORF1ab/nsp31705N1705NaaCaaT22AY.4.2.10.000298
ORF1ab/nsp31705N1705delAAC---22AY.430.000009
ORF1ab/nsp31705N1705KaaCaaA22AY.430.000009
ORF1ab/nsp31705N1705delAAC---22AY.440.000012
ORF1ab/nsp31705N1705delAAC---22AY.46.20.001271
ORF1ab/nsp31705N1705NaaCaaT22AY.46.30.001867
ORF1ab/nsp31705N1705NaaCaaT22AY.46.50.000397
ORF1ab/nsp31705N1705NaaCaaT22AY.580.001815
ORF1ab/nsp31705N1705SaAcaGc22AY.590.001059
ORF1ab/nsp31705N1705NaaCaaT22AY.690.000373
ORF1ab/nsp31705N1705NaaCaaT22AY.7.10.000225
ORF1ab/nsp31705N1705KaaCaaA22AY.840.000875
ORF1ab/nsp31705N1705NaaCaaT22AY.960.004149
ORF1ab/nsp31705N1705NaaCaaT22AY.990.002099
ORF1ab/nsp31705N1705SaAcaGc22B0.000256
ORF1ab/nsp31705N1705delAAC---22B.10.000018
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