CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1700

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31700L1700LL2518LsynctCctT127711610.9091627817-7819
ORF1ab/nsp31700L1700LL2518LsynctCctA12771110.08692257817-7819
ORF1ab/nsp31700L1700LL2518LsynctCctG127740.003132347817-7819
ORF1ab/nsp31700L1700LL2518LsynCtCTtA127710.0007830857817-7819
ORF1ab/nsp31700L1700FL2518FnonsynCtcTtc8148130.9987717817-7819
ORF1ab/nsp31700L1700FL2518FnonsynCtCTtT81410.00122857817-7819
ORF1ab/nsp31700L1700IL2518InonsynCtcAtc10010017817-7819
ORF1ab/nsp31700L1700delL2518deldelCTC---999917817-7819
ORF1ab/nsp31700L1700RL2518RnonsyncTccGc67650.9701497817-7819
ORF1ab/nsp31700L1700RL2518RnonsyncTCcGT6720.02985077817-7819
ORF1ab/nsp31700L1700PL2518PnonsyncTccCc525217817-7819
ORF1ab/nsp31700L1700VL2518VnonsynCtcGtc151517817-7819
ORF1ab/nsp31700L1700HL2518HnonsyncTccAc4417817-7819
ORF1ab/nsp31700L1700del1L2518del1delCtc-tc420.57817-7819
ORF1ab/nsp31700L1700del1L2518del1delCtC-tT410.257817-7819
ORF1ab/nsp31700L1700del1L2518del1delCTC-NN410.257817-7819
ORF1ab/nsp31700L1700SL2518SnonsynCTcTCc2217817-7819
ORF1ab/nsp31700L1700GL2518GnonsynCTCGGT2217817-7819
ORF1ab/nsp31700L1700YL2518YnonsynCTcTAc1117817-7819
ORF1ab/nsp31700L1700XL2518XnonsynCTCTAA1117817-7819
ORF1ab/nsp31700L1700QL2518QnonsyncTCcAA1117817-7819

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31700L1700LctCctT11611277All0.000222
ORF1ab/nsp31700L1700LctCctA1111277All0.000021
ORF1ab/nsp31700L1700LctCctG41277All0.000001
ORF1ab/nsp31700L1700LCtCTtA11277All0
ORF1ab/nsp31700L1700FCtcTtc813814All0.000155
ORF1ab/nsp31700L1700FCtCTtT1814All0
ORF1ab/nsp31700L1700LctCctT341366B.1.1.70.000305
ORF1ab/nsp31700L1700LctCctA25366B.1.1.70.000022
ORF1ab/nsp31700L1700FCtcTtc196197B.1.1.70.000175
ORF1ab/nsp31700L1700FCtCTtT1197B.1.1.70.000001
ORF1ab/nsp31700L1700FCtcTtc119119AY.330.007947
ORF1ab/nsp31700L1700ICtcAtc100100All0.000019
ORF1ab/nsp31700L1700delCTC---9999All0.000019
ORF1ab/nsp31700L1700LctCctT5476AY.40.000084
ORF1ab/nsp31700L1700LctCctA2276AY.40.000034
ORF1ab/nsp31700L1700FCtcTtc7676AY.430.000337
ORF1ab/nsp31700L1700LctCctT7374AY.30.000726
ORF1ab/nsp31700L1700LctCctA174AY.30.00001
ORF1ab/nsp31700L1700RcTccGc6567All0.000012
ORF1ab/nsp31700L1700RcTCcGT267All0
ORF1ab/nsp31700L1700ICtcAtc5858B.1.1.70.000052
ORF1ab/nsp31700L1700PcTccCc5252All0.00001
ORF1ab/nsp31700L1700delCTC---4444B.1.1.70.000039
ORF1ab/nsp31700L1700LctCctT3844B.1.617.20.000143
ORF1ab/nsp31700L1700LctCctA644B.1.617.20.000023
ORF1ab/nsp31700L1700LctCctT4242P.10.000662
ORF1ab/nsp31700L1700RcTccGc3939AY.4.20.000846
ORF1ab/nsp31700L1700FCtcTtc3333B.1.617.20.000124
ORF1ab/nsp31700L1700LctCctT3132AY.430.000137
ORF1ab/nsp31700L1700LctCctA132AY.430.000004
ORF1ab/nsp31700L1700LctCctT3030N.100.882353
ORF1ab/nsp31700L1700FCtcTtc2929AY.30.000288
ORF1ab/nsp31700L1700LctCctT2929AY.470.000902
ORF1ab/nsp31700L1700LctCctT2929B.1.5260.000682
ORF1ab/nsp31700L1700FCtcTtc2828AY.40.000044
ORF1ab/nsp31700L1700LctCctT2727AY.250.000162
ORF1ab/nsp31700L1700LctCctT2327B.10.000211
ORF1ab/nsp31700L1700LctCctA427B.10.000037
ORF1ab/nsp31700L1700LctCctT2626AY.260.000736
ORF1ab/nsp31700L1700LctCctT2626B.1.1.500.017651
ORF1ab/nsp31700L1700LctCctT2626B.1.20.000229
ORF1ab/nsp31700L1700LctCctT2425AY.440.000146
ORF1ab/nsp31700L1700LctCctA125AY.440.000006
ORF1ab/nsp31700L1700FCtcTtc2222B.1.20.000194
ORF1ab/nsp31700L1700FCtcTtc2121B.1.10.000381
ORF1ab/nsp31700L1700LctCctT2121B.1.4270.00106
ORF1ab/nsp31700L1700LctCctT1919AY.570.012467
ORF1ab/nsp31700L1700FCtcTtc1818AY.1020.000477
ORF1ab/nsp31700L1700LctCctT1018AY.1030.000062
ORF1ab/nsp31700L1700LctCctA818AY.1030.00005
ORF1ab/nsp31700L1700LctCctT1418B.1.1770.000184
ORF1ab/nsp31700L1700LctCctA418B.1.1770.000053
ORF1ab/nsp31700L1700LctCctT1818Q.10.002274
ORF1ab/nsp31700L1700VCtcGtc1515All0.000003
ORF1ab/nsp31700L1700FCtcTtc1515AY.390.000371
ORF1ab/nsp31700L1700RcTccGc1515B.1.1.70.000013
ORF1ab/nsp31700L1700FCtcTtc1414B.1.3510.000416
ORF1ab/nsp31700L1700FCtcTtc1313AY.1030.000081
ORF1ab/nsp31700L1700LctCctT1313B.1.1.2840.001396
ORF1ab/nsp31700L1700LctCctT1313B.1.1.4130.089655
ORF1ab/nsp31700L1700FCtcTtc1212B.1.1770.000158
ORF1ab/nsp31700L1700LctCctT911B.1.1.330.003788
ORF1ab/nsp31700L1700LctCctA211B.1.1.330.000842
ORF1ab/nsp31700L1700FCtcTtc1111B.1.177.810.002083
ORF1ab/nsp31700L1700FCtcTtc1111B.1.2430.000765
ORF1ab/nsp31700L1700LctCctT1111B.1.5380.08871
ORF1ab/nsp31700L1700FCtcTtc1010AY.250.00006
ORF1ab/nsp31700L1700LctCctT1010B.1.177.210.000765
ORF1ab/nsp31700L1700FCtcTtc1010B.1.5960.000871
ORF1ab/nsp31700L1700ICtcAtc99AY.250.000054
ORF1ab/nsp31700L1700FCtcTtc99B.1.177.40.0019
ORF1ab/nsp31700L1700LctCctT99B.1.3690.002567
ORF1ab/nsp31700L1700PcTccCc88AY.20.002849
ORF1ab/nsp31700L1700LctCctT88AY.230.000558
ORF1ab/nsp31700L1700VCtcGtc88AY.370.002528
ORF1ab/nsp31700L1700FCtcTtc88B.1.177.870.005822
ORF1ab/nsp31700L1700delCTC---88B.1.617.20.00003
ORF1ab/nsp31700L1700ICtcAtc88B.1.6210.000708
ORF1ab/nsp31700L1700LctCctT88B.1.6270.016162
ORF1ab/nsp31700L1700FCtcTtc77AY.260.000198
ORF1ab/nsp31700L1700FCtcTtc77AY.440.000043
ORF1ab/nsp31700L1700FCtcTtc77AY.750.000392
ORF1ab/nsp31700L1700LctCctT77AY.9.20.000257
ORF1ab/nsp31700L1700LctCctT67B.1.3510.000178
ORF1ab/nsp31700L1700LctCctA17B.1.3510.00003
ORF1ab/nsp31700L1700LctCctT56AY.1020.000133
ORF1ab/nsp31700L1700LctCctA16AY.1020.000027
ORF1ab/nsp31700L1700LctCctA66AY.770.006764
ORF1ab/nsp31700L1700LctCctT66B.1.1.5190.000238
ORF1ab/nsp31700L1700RcTccGc66B.1.5950.001566
ORF1ab/nsp31700L1700PcTccCc66V.20.193548
ORF1ab/nsp31700L1700LctCctT55AY.140.00044
ORF1ab/nsp31700L1700FCtcTtc55B.10.000046
ORF1ab/nsp31700L1700LctCctA55B.1.1.2140.000277
ORF1ab/nsp31700L1700LctCctT35B.1.2580.0002
ORF1ab/nsp31700L1700LctCctG25B.1.2580.000133
ORF1ab/nsp31700L1700LctCctT55W.10.043478
ORF1ab/nsp31700L1700RcTCcGT240.111111
ORF1ab/nsp31700L1700RcTccGc240.111111
ORF1ab/nsp31700L1700HcTccAc44All0.000001
ORF1ab/nsp31700L1700del1Ctc-tc24All0
ORF1ab/nsp31700L1700del1CtC-tT14All0
ORF1ab/nsp31700L1700del1CTC-NN14All0
ORF1ab/nsp31700L1700LctCctT44AY.390.000099
ORF1ab/nsp31700L1700PcTccCc44AY.40.000006
ORF1ab/nsp31700L1700FCtcTtc44AY.420.000161
ORF1ab/nsp31700L1700LctCctT44AY.46.40.000658
ORF1ab/nsp31700L1700LctCctA34AY.610.000314
ORF1ab/nsp31700L1700LctCctT14AY.610.000105
ORF1ab/nsp31700L1700LctCctT44AY.99.20.000369
ORF1ab/nsp31700L1700PcTccCc44B.1.1.70.000004
ORF1ab/nsp31700L1700LctCctT44B.1.1790.015038
ORF1ab/nsp31700L1700PcTccCc44B.1.20.000035
ORF1ab/nsp31700L1700LctCctT44B.1.2650.005083
ORF1ab/nsp31700L1700FCtcTtc44B.1.4290.000094
ORF1ab/nsp31700L1700LctCctT44B.1.5950.001044
ORF1ab/nsp31700L1700LctCctT44B.1.6210.000354
ORF1ab/nsp31700L1700LctCctT44B.1.6280.001409
ORF1ab/nsp31700L1700ICtcAtc44P.10.000063
ORF1ab/nsp31700L1700LctCctT44P.1.160.001496
ORF1ab/nsp31700L1700FCtcTtc330.166667
ORF1ab/nsp31700L1700LctCctT33AY.1000.000138
ORF1ab/nsp31700L1700FCtcTtc33AY.1170.000254
ORF1ab/nsp31700L1700LctCctT33AY.200.000117
ORF1ab/nsp31700L1700ICtcAtc33AY.230.000209
ORF1ab/nsp31700L1700RcTccGc33AY.40.000005
ORF1ab/nsp31700L1700LctCctA23AY.460.000208
ORF1ab/nsp31700L1700LctCctT13AY.460.000104
ORF1ab/nsp31700L1700FCtcTtc33AY.50.000062
ORF1ab/nsp31700L1700FCtcTtc33AY.540.000286
ORF1ab/nsp31700L1700LctCctT33AY.790.003632
ORF1ab/nsp31700L1700FCtcTtc33AY.980.000237
ORF1ab/nsp31700L1700PcTccCc33B.10.000027
ORF1ab/nsp31700L1700LctCctT33B.1.1.1130.020979
ORF1ab/nsp31700L1700LctCctT33B.1.1.3060.001315
ORF1ab/nsp31700L1700FCtcTtc33B.1.1.3690.001339
ORF1ab/nsp31700L1700del1Ctc-tc23B.1.1.70.000002
ORF1ab/nsp31700L1700del1CTC-NN13B.1.1.70.000001
ORF1ab/nsp31700L1700FCtcTtc33B.1.1600.000094
ORF1ab/nsp31700L1700delCTC---33B.1.1770.00004
ORF1ab/nsp31700L1700PcTccCc33B.1.1770.00004
ORF1ab/nsp31700L1700LctCctT33B.1.177.520.005272
ORF1ab/nsp31700L1700FCtcTtc33B.1.2210.000213
ORF1ab/nsp31700L1700LctCctT33B.1.2430.000209
ORF1ab/nsp31700L1700FCtcTtc33B.1.3960.002117
ORF1ab/nsp31700L1700LctCctT33B.1.4820.25
ORF1ab/nsp31700L1700ICtcAtc33B.1.617.20.000011
ORF1ab/nsp31700L1700FCtcTtc33B.1.6350.052632
ORF1ab/nsp31700L1700FCtcTtc33B.6.60.002667
ORF1ab/nsp31700L1700FCtcTtc33P.10.000047
ORF1ab/nsp31700L1700PcTccCc33P.10.000047
ORF1ab/nsp31700L1700LctCctT33P.20.00056
ORF1ab/nsp31700L1700LctCctA33Q.40.001364
ORF1ab/nsp31700L1700GCTCGGT220.111111
ORF1ab/nsp31700L1700delCTC---220.111111
ORF1ab/nsp31700L1700SCTcTCc220.111111
ORF1ab/nsp31700L1700PcTccCc220.111111
ORF1ab/nsp31700L1700LctCctA120.055556
ORF1ab/nsp31700L1700LCtCTtA120.055556
ORF1ab/nsp31700L1700GCTCGGT22All0
ORF1ab/nsp31700L1700SCTcTCc22All0
ORF1ab/nsp31700L1700ICtcAtc22AY.1030.000012
ORF1ab/nsp31700L1700FCtcTtc22AY.1060.00067
ORF1ab/nsp31700L1700FCtcTtc22AY.1180.000125
ORF1ab/nsp31700L1700FCtcTtc22AY.120.000632
ORF1ab/nsp31700L1700LctCctT22AY.160.000759
ORF1ab/nsp31700L1700delCTC---22AY.190.002281
ORF1ab/nsp31700L1700ICtcAtc22AY.260.000057
ORF1ab/nsp31700L1700FCtcTtc22AY.290.000032
ORF1ab/nsp31700L1700LctCctT12AY.3.10.000085
ORF1ab/nsp31700L1700LctCctG12AY.3.10.000085
ORF1ab/nsp31700L1700FCtcTtc22AY.360.000296
ORF1ab/nsp31700L1700FCtcTtc22AY.39.10.000079
ORF1ab/nsp31700L1700FCtcTtc22AY.4.20.000043
ORF1ab/nsp31700L1700LctCctT22AY.4.20.000043
ORF1ab/nsp31700L1700PcTccCc22AY.430.000009
ORF1ab/nsp31700L1700delCTC---22AY.430.000009
ORF1ab/nsp31700L1700FCtcTtc22AY.450.000243
ORF1ab/nsp31700L1700FCtcTtc22AY.460.000208
ORF1ab/nsp31700L1700delCTC---22AY.46.20.001271
ORF1ab/nsp31700L1700LctCctA12AY.50.000021
ORF1ab/nsp31700L1700LctCctT12AY.50.000021
ORF1ab/nsp31700L1700FCtcTtc22AY.5.40.000553
ORF1ab/nsp31700L1700LctCctT22AY.590.001059
ORF1ab/nsp31700L1700FCtcTtc22AY.610.00021
ORF1ab/nsp31700L1700FCtcTtc22AY.870.001665
ORF1ab/nsp31700L1700FCtcTtc22AY.900.001369
ORF1ab/nsp31700L1700LctCctT22AY.980.000158
ORF1ab/nsp31700L1700delCTC---22B.10.000018
ORF1ab/nsp31700L1700LctCctT22B.1.10.000036
ORF1ab/nsp31700L1700FCtcTtc22B.1.1.1640.010309
ORF1ab/nsp31700L1700FCtcTtc22B.1.1.2140.000111
ORF1ab/nsp31700L1700LctCctT12B.1.1.2220.000204
ORF1ab/nsp31700L1700LctCctA12B.1.1.2220.000204
ORF1ab/nsp31700L1700delCTC---22B.1.1.2360.013793
ORF1ab/nsp31700L1700LctCctT22B.1.1.280.000622
ORF1ab/nsp31700L1700LctCctT22B.1.1.3110.000716
ORF1ab/nsp31700L1700FCtcTtc22B.1.1.5190.000079
ORF1ab/nsp31700L1700VCtcGtc22B.1.1.70.000002
ORF1ab/nsp31700L1700delCTC---22B.1.177.210.000153
ORF1ab/nsp31700L1700delCTC---22B.1.177.570.000562
ORF1ab/nsp31700L1700LctCctA22B.1.177.870.001456
ORF1ab/nsp31700L1700LctCctT22B.1.2210.000142
ORF1ab/nsp31700L1700FCtcTtc22B.1.2340.000264
ORF1ab/nsp31700L1700delCTC---22B.1.2580.000133
ORF1ab/nsp31700L1700LctCctA22B.1.351.20.000605
ORF1ab/nsp31700L1700FCtcTtc22B.1.351.30.001753
ORF1ab/nsp31700L1700LctCctA22B.1.4000.000858
ORF1ab/nsp31700L1700LctCctT22B.1.4290.000047
ORF1ab/nsp31700L1700FCtcTtc22B.1.5260.000047
ORF1ab/nsp31700L1700LctCctT22B.1.5750.000607
ORF1ab/nsp31700L1700LctCctT22C.160.002121
ORF1ab/nsp31700L1700LctCctT22C.260.014706
ORF1ab/nsp31700L1700LctCctT22C.370.000232
ORF1ab/nsp31700L1700FCtcTtc22P.1.10.000635
ORF1ab/nsp31700L1700LctCctT22Q.80.00033
ORF1ab/nsp31700L1700QcTCcAA110.055556
ORF1ab/nsp31700L1700YCTcTAc110.055556
ORF1ab/nsp31700L1700HcTccAc110.055556
ORF1ab/nsp31700L1700XCTCTAA110.055556
ORF1ab/nsp31700L1700delCTC---11A0.000387
ORF1ab/nsp31700L1700PcTccCc11A.10.000282
ORF1ab/nsp31700L1700FCtcTtc11A.23.10.000704
ORF1ab/nsp31700L1700FCtcTtc11AD.20.000219
ORF1ab/nsp31700L1700FCtcTtc11AH.30.003802
ORF1ab/nsp31700L1700YCTcTAc11All0
ORF1ab/nsp31700L1700QcTCcAA11All0
ORF1ab/nsp31700L1700XCTCTAA11All0
ORF1ab/nsp31700L1700PcTccCc11AY.1000.000046
ORF1ab/nsp31700L1700FCtcTtc11AY.1000.000046
ORF1ab/nsp31700L1700PcTccCc11AY.1020.000027
ORF1ab/nsp31700L1700LctCctA11AY.1040.001984
ORF1ab/nsp31700L1700FCtcTtc11AY.1090.00074
ORF1ab/nsp31700L1700ICtcAtc11AY.110.001339
ORF1ab/nsp31700L1700delCTC---11AY.1110.000183
ORF1ab/nsp31700L1700LctCctT11AY.1130.000142
ORF1ab/nsp31700L1700LctCctG11AY.116.10.000311
ORF1ab/nsp31700L1700LctCctT11AY.1170.000085
ORF1ab/nsp31700L1700LctCctT11AY.1190.000035
ORF1ab/nsp31700L1700ICtcAtc11AY.1200.000037
ORF1ab/nsp31700L1700delCTC---11AY.1200.000037
ORF1ab/nsp31700L1700LctCctT11AY.130.000161
ORF1ab/nsp31700L1700LctCctT11AY.20.000356
ORF1ab/nsp31700L1700FCtcTtc11AY.200.000039
ORF1ab/nsp31700L1700FCtcTtc11AY.230.00007
ORF1ab/nsp31700L1700PcTccCc11AY.260.000028
ORF1ab/nsp31700L1700LctCctT11AY.270.000065
ORF1ab/nsp31700L1700LctCctT11AY.290.000016
ORF1ab/nsp31700L1700VCtcGtc11AY.290.000016
ORF1ab/nsp31700L1700ICtcAtc11AY.290.000016
ORF1ab/nsp31700L1700FCtcTtc11AY.29.10.000221
ORF1ab/nsp31700L1700ICtcAtc11AY.30.00001
ORF1ab/nsp31700L1700PcTccCc11AY.30.00001
ORF1ab/nsp31700L1700FCtcTtc11AY.3.10.000085
ORF1ab/nsp31700L1700delCTC---11AY.330.000067
ORF1ab/nsp31700L1700VCtcGtc11AY.330.000067
ORF1ab/nsp31700L1700LctCctT11AY.330.000067
ORF1ab/nsp31700L1700FCtcTtc11AY.340.000097
ORF1ab/nsp31700L1700LctCctA11AY.380.000499
ORF1ab/nsp31700L1700LctCctT11AY.39.10.00004
ORF1ab/nsp31700L1700ICtcAtc11AY.40.000002
ORF1ab/nsp31700L1700FCtcTtc11AY.4.2.10.000149
ORF1ab/nsp31700L1700FCtcTtc11AY.4.50.000107
ORF1ab/nsp31700L1700LctCctT11AY.4.50.000107
ORF1ab/nsp31700L1700delCTC---11AY.440.000006
ORF1ab/nsp31700L1700LctCctT11AY.450.000122
ORF1ab/nsp31700L1700VCtcGtc11AY.460.000104
ORF1ab/nsp31700L1700delCTC---11AY.50.000021
ORF1ab/nsp31700L1700LctCctT11AY.500.000799
ORF1ab/nsp31700L1700delCTC---11AY.520.000814
ORF1ab/nsp31700L1700LctCctA11AY.520.000814
ORF1ab/nsp31700L1700LctCctT11AY.550.000917
ORF1ab/nsp31700L1700FCtcTtc11AY.590.00053
ORF1ab/nsp31700L1700delCTC---11AY.60.000041
ORF1ab/nsp31700L1700FCtcTtc11AY.680.000274
ORF1ab/nsp31700L1700LctCctT11AY.690.000187
ORF1ab/nsp31700L1700LctCctT11AY.7.10.000113
ORF1ab/nsp31700L1700LctCctA11AY.7.20.000559
ORF1ab/nsp31700L1700FCtcTtc11AY.740.000116
ORF1ab/nsp31700L1700LctCctT11AY.740.000116
ORF1ab/nsp31700L1700delCTC---11AY.810.001992
ORF1ab/nsp31700L1700delCTC---11AY.840.000437
ORF1ab/nsp31700L1700FCtcTtc11AY.850.000427
ORF1ab/nsp31700L1700LctCctT11AY.90.000068
ORF1ab/nsp31700L1700delCTC---11AY.90.000068
ORF1ab/nsp31700L1700LctCctT11AY.9.10.000084
ORF1ab/nsp31700L1700PcTccCc11AY.9.20.000037
ORF1ab/nsp31700L1700FCtcTtc11AY.9.20.000037
ORF1ab/nsp31700L1700LctCctT11AY.920.000287
ORF1ab/nsp31700L1700FCtcTtc11AY.920.000287
ORF1ab/nsp31700L1700delCTC---11AY.990.001049
ORF1ab/nsp31700L1700delCTC---11AY.99.10.001553
ORF1ab/nsp31700L1700PcTccCc11AY.99.20.000092
ORF1ab/nsp31700L1700ICtcAtc11B.10.000009
ORF1ab/nsp31700L1700delCTC---11B.1.10.000018
ORF1ab/nsp31700L1700LctCctT11B.1.1.2070.001182
ORF1ab/nsp31700L1700LctCctT11B.1.1.250.000569
ORF1ab/nsp31700L1700FCtcTtc11B.1.1.2570.009709
ORF1ab/nsp31700L1700LctCctT11B.1.1.3180.000302
ORF1ab/nsp31700L1700LctCctT11B.1.1.3220.008772
ORF1ab/nsp31700L1700FCtcTtc11B.1.1.330.000421
ORF1ab/nsp31700L1700FCtcTtc11B.1.1.370.000193
ORF1ab/nsp31700L1700LctCctT11B.1.1.3730.02381
ORF1ab/nsp31700L1700LctCctT11B.1.1.4340.000349
ORF1ab/nsp31700L1700FCtcTtc11B.1.1.4340.000349
ORF1ab/nsp31700L1700LctCctT11B.1.1.4400.011765
ORF1ab/nsp31700L1700VCtcGtc11B.1.1.460.004367
ORF1ab/nsp31700L1700FCtcTtc11B.1.1.580.005376
ORF1ab/nsp31700L1700FCtcTtc11B.1.1.630.000386
ORF1ab/nsp31700L1700FCtcTtc11B.1.110.30.000718
ORF1ab/nsp31700L1700FCtcTtc11B.1.1180.006711
ORF1ab/nsp31700L1700LctCctA11B.1.1570.002985
ORF1ab/nsp31700L1700LctCctT11B.1.1600.000031
ORF1ab/nsp31700L1700PcTccCc11B.1.177.170.000821
ORF1ab/nsp31700L1700delCTC---11B.1.177.180.00116
ORF1ab/nsp31700L1700delCTC---11B.1.177.40.000211
ORF1ab/nsp31700L1700LctCctT11B.1.177.440.000519
ORF1ab/nsp31700L1700delCTC---11B.1.177.60.000977
ORF1ab/nsp31700L1700delCTC---11B.1.177.630.002703
ORF1ab/nsp31700L1700LctCctA11B.1.177.730.000566
ORF1ab/nsp31700L1700FCtcTtc11B.1.177.750.001041
ORF1ab/nsp31700L1700FCtcTtc11B.1.177.760.002494
ORF1ab/nsp31700L1700LctCctT11B.1.177.810.000189
ORF1ab/nsp31700L1700delCTC---11B.1.177.830.001481
ORF1ab/nsp31700L1700delCTC---11B.1.1790.003759
ORF1ab/nsp31700L1700del1CtC-tT11B.1.20.000009
ORF1ab/nsp31700L1700ICtcAtc11B.1.20.000009
ORF1ab/nsp31700L1700PcTccCc11B.1.2210.000071
ORF1ab/nsp31700L1700PcTccCc11B.1.230.006061
ORF1ab/nsp31700L1700LctCctT11B.1.2400.000216
ORF1ab/nsp31700L1700ICtcAtc11B.1.2400.000216
ORF1ab/nsp31700L1700delCTC---11B.1.258.100.011364
ORF1ab/nsp31700L1700FCtcTtc11B.1.3110.000275
ORF1ab/nsp31700L1700FCtcTtc11B.1.360.000146
ORF1ab/nsp31700L1700delCTC---11B.1.360.000146
ORF1ab/nsp31700L1700LctCctT11B.1.36.180.00042
ORF1ab/nsp31700L1700PcTccCc11B.1.36.200.016949
ORF1ab/nsp31700L1700FCtcTtc11B.1.36.310.001751
ORF1ab/nsp31700L1700LctCctT11B.1.36.80.001
ORF1ab/nsp31700L1700LctCctT11B.1.36.90.003215
ORF1ab/nsp31700L1700LctCctT11B.1.3890.001002
ORF1ab/nsp31700L1700delCTC---11B.1.4090.000781
ORF1ab/nsp31700L1700FCtcTtc11B.1.4270.00005
ORF1ab/nsp31700L1700FCtcTtc11B.1.438.10.000107
ORF1ab/nsp31700L1700LctCctT11B.1.438.10.000107
ORF1ab/nsp31700L1700FCtcTtc11B.1.4590.004082
ORF1ab/nsp31700L1700LctCctT11B.1.466.20.000391
ORF1ab/nsp31700L1700FCtcTtc11B.1.4990.00105
ORF1ab/nsp31700L1700FCtcTtc11B.1.5250.000113
ORF1ab/nsp31700L1700LctCctT11B.1.5610.000397
ORF1ab/nsp31700L1700delCTC---11B.1.5610.000397
ORF1ab/nsp31700L1700FCtcTtc11B.1.5640.000426
ORF1ab/nsp31700L1700ICtcAtc11B.1.5640.000426
ORF1ab/nsp31700L1700FCtcTtc11B.1.5650.00081
ORF1ab/nsp31700L1700FCtcTtc11B.1.5670.003333
ORF1ab/nsp31700L1700FCtcTtc11B.1.5880.00091
ORF1ab/nsp31700L1700LctCctT11B.1.5960.000087
ORF1ab/nsp31700L1700HcTccAc11B.1.5960.000087
ORF1ab/nsp31700L1700LctCctT11B.1.6090.000479
ORF1ab/nsp31700L1700LctCctT11B.1.617.10.000129
ORF1ab/nsp31700L1700PcTccCc11B.1.617.20.000004
ORF1ab/nsp31700L1700VCtcGtc11B.1.617.20.000004
ORF1ab/nsp31700L1700HcTccAc11B.1.617.20.000004
ORF1ab/nsp31700L1700FCtcTtc11B.1.6210.000089
ORF1ab/nsp31700L1700LctCctT11B.1.6230.000536
ORF1ab/nsp31700L1700FCtcTtc11B.30.000831
ORF1ab/nsp31700L1700delCTC---11B.4.40.018868
ORF1ab/nsp31700L1700FCtcTtc11B.550.00295
ORF1ab/nsp31700L1700LctCctA11B.6.60.000889
ORF1ab/nsp31700L1700LctCctT11C.320.023256
ORF1ab/nsp31700L1700HcTccAc11C.350.000774
ORF1ab/nsp31700L1700FCtcTtc11C.36.30.000567
ORF1ab/nsp31700L1700ICtcAtc11C.370.000116
ORF1ab/nsp31700L1700LctCctT11C.37.10.002618
ORF1ab/nsp31700L1700FCtcTtc11D.20.000075
ORF1ab/nsp31700L1700delCTC---11P.10.000016
ORF1ab/nsp31700L1700LctCctT11P.1.10.000318
ORF1ab/nsp31700L1700PcTccCc11P.1.140.000048
ORF1ab/nsp31700L1700FCtcTtc11P.1.150.000232
ORF1ab/nsp31700L1700LctCctT11P.1.20.001156
ORF1ab/nsp31700L1700LctCctT11P.1.70.000319
ORF1ab/nsp31700L1700FCtcTtc11P.20.000187
ORF1ab/nsp31700L1700FCtcTtc11Q.80.000165
ORF1ab/nsp31700L1700ICtcAtc11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.