CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1699 & Codon = --t

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31699S1699del2S2517del2delTCt--t59580.9830517814-7816

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31699S1699del2TCt--t5859All0.000011
ORF1ab/nsp31699S1699del2TCt--t1919B.1.1.70.000017
ORF1ab/nsp31699S1699del2TCt--t99B.1.20.000079
ORF1ab/nsp31699S1699del2TCt--t77AY.440.000043
ORF1ab/nsp31699S1699del2TCt--t44AY.430.000018
ORF1ab/nsp31699S1699del2TCt--t22AY.230.000139
ORF1ab/nsp31699S1699del2TCt--t22AY.390.000049
ORF1ab/nsp31699S1699del2TCt--t22AY.46.60.000144
ORF1ab/nsp31699S1699del2TCt--t22B.10.000018
ORF1ab/nsp31699S1699del2TCt--t11AY.1130.000142
ORF1ab/nsp31699S1699del2TCt--t11AY.1200.000037
ORF1ab/nsp31699S1699del2TCt--t11AY.120.10.000321
ORF1ab/nsp31699S1699del2TCt--t11AY.1210.000135
ORF1ab/nsp31699S1699del2TCt--t11AY.140.000088
ORF1ab/nsp31699S1699del2TCt--t11AY.9.10.000084
ORF1ab/nsp31699S1699del2TCt--t11AY.9.20.000037
ORF1ab/nsp31699S1699del2TCt--t11AY.980.000079
ORF1ab/nsp31699S1699del2TCt--t11AY.98.10.000048
ORF1ab/nsp31699S1699del2TCt--t11B.1.3510.00003
ORF1ab/nsp31699S1699del2TCt--t11B.1.617.20.000004