CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1699

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31699S1699FS2517FnonsyntCttTt1417141717814-7816
ORF1ab/nsp31699S1699PS2517PnonsynTctCct1054105417814-7816
ORF1ab/nsp31699S1699SS2517SsyntcTtcC5354250.7943937814-7816
ORF1ab/nsp31699S1699SS2517SsyntcTtcA535590.110287814-7816
ORF1ab/nsp31699S1699SS2517SsyntcTtcG535510.09532717814-7816
ORF1ab/nsp31699S1699AS2517AnonsynTctGct13813817814-7816
ORF1ab/nsp31699S1699delS2517deldelTCT---10010017814-7816
ORF1ab/nsp31699S1699del2S2517del2delTCt--t59580.9830517814-7816
ORF1ab/nsp31699S1699del2S2517del2delTCT--G5910.01694927814-7816
ORF1ab/nsp31699S1699YS2517YnonsyntCttAt282817814-7816
ORF1ab/nsp31699S1699del1S2517del1deltCtt-t151517814-7816
ORF1ab/nsp31699S1699TS2517TnonsynTctAct9917814-7816
ORF1ab/nsp31699S1699LS2517LnonsyntCTtTA630.57814-7816
ORF1ab/nsp31699S1699LS2517LnonsynTCTCTC620.3333337814-7816
ORF1ab/nsp31699S1699LS2517LnonsynTCtCTt610.1666677814-7816
ORF1ab/nsp31699S1699IS2517InonsynTCTATC420.57814-7816
ORF1ab/nsp31699S1699IS2517InonsynTCtATt420.57814-7816
ORF1ab/nsp31699S1699VS2517VnonsynTCTGTC2217814-7816
ORF1ab/nsp31699S1699DS2517DnonsynTCtGAt2217814-7816
ORF1ab/nsp31699S1699CS2517CnonsyntCttGt2217814-7816
ORF1ab/nsp31699S1699XS2517XnonsyntCTtAA2217814-7816
ORF1ab/nsp31699S1699NS2517NnonsynTCtAAt1117814-7816

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31699S1699FtCttTt14171417All0.000271
ORF1ab/nsp31699S1699PTctCct10541054All0.000202
ORF1ab/nsp31699S1699PTctCct861861AY.40.00134
ORF1ab/nsp31699S1699StcTtcC425535All0.000081
ORF1ab/nsp31699S1699StcTtcA59535All0.000011
ORF1ab/nsp31699S1699StcTtcG51535All0.00001
ORF1ab/nsp31699S1699FtCttTt285285B.1.1.70.000255
ORF1ab/nsp31699S1699FtCttTt246246AY.40.000383
ORF1ab/nsp31699S1699StcTtcC204208B.1.617.20.000768
ORF1ab/nsp31699S1699StcTtcG4208B.1.617.20.000015
ORF1ab/nsp31699S1699ATctGct138138All0.000026
ORF1ab/nsp31699S1699FtCttTt131131B.1.3510.003894
ORF1ab/nsp31699S1699ATctGct118118AY.40.000184
ORF1ab/nsp31699S1699delTCT---100100All0.000019
ORF1ab/nsp31699S1699FtCttTt7878AY.360.011561
ORF1ab/nsp31699S1699FtCttTt6565L.10.12381
ORF1ab/nsp31699S1699FtCttTt6363B.1.4181
ORF1ab/nsp31699S1699del2TCt--t5859All0.000011
ORF1ab/nsp31699S1699del2TCT--G159All0
ORF1ab/nsp31699S1699FtCttTt5959B.1.1.2240.842857
ORF1ab/nsp31699S1699StcTtcC5353AY.1020.001405
ORF1ab/nsp31699S1699delTCT---4444B.1.1.70.000039
ORF1ab/nsp31699S1699FtCttTt3636B.1.10.000653
ORF1ab/nsp31699S1699PTctCct3636B.1.1680.972973
ORF1ab/nsp31699S1699StcTtcC2835B.1.1.70.000025
ORF1ab/nsp31699S1699StcTtcA435B.1.1.70.000004
ORF1ab/nsp31699S1699StcTtcG335B.1.1.70.000003
ORF1ab/nsp31699S1699FtCttTt3535B.1.617.20.000132
ORF1ab/nsp31699S1699PTctCct3232B.1.1.70.000029
ORF1ab/nsp31699S1699FtCttTt3131AY.500.02478
ORF1ab/nsp31699S1699StcTtcA3131B.1.1.2140.001719
ORF1ab/nsp31699S1699YtCttAt2828All0.000005
ORF1ab/nsp31699S1699StcTtcA1626AY.40.000025
ORF1ab/nsp31699S1699StcTtcC726AY.40.000011
ORF1ab/nsp31699S1699StcTtcG326AY.40.000005
ORF1ab/nsp31699S1699StcTtcC2626AY.920.007469
ORF1ab/nsp31699S1699FtCttTt2626B.10.000238
ORF1ab/nsp31699S1699FtCttTt2121AY.30.000209
ORF1ab/nsp31699S1699FtCttTt1919AY.250.000114
ORF1ab/nsp31699S1699StcTtcC1919AY.430.000084
ORF1ab/nsp31699S1699PTctCct1919B.10.000174
ORF1ab/nsp31699S1699del2TCt--t1919B.1.1.70.000017
ORF1ab/nsp31699S1699FtCttTt1919B.1.36.10.021665
ORF1ab/nsp31699S1699StcTtcG1418AY.1030.000087
ORF1ab/nsp31699S1699StcTtcA218AY.1030.000012
ORF1ab/nsp31699S1699StcTtcC218AY.1030.000012
ORF1ab/nsp31699S1699FtCttTt1717AY.430.000075
ORF1ab/nsp31699S1699PTctCct1717B.1.20.00015
ORF1ab/nsp31699S1699del1tCtt-t1515All0.000003
ORF1ab/nsp31699S1699FtCttTt1515P.10.000236
ORF1ab/nsp31699S1699StcTtcC1214AY.390.000297
ORF1ab/nsp31699S1699StcTtcG214AY.390.000049
ORF1ab/nsp31699S1699FtCttTt1414B.1.20.000123
ORF1ab/nsp31699S1699FtCttTt1212B.30.009967
ORF1ab/nsp31699S1699FtCttTt1111AY.1030.000068
ORF1ab/nsp31699S1699FtCttTt1111B.1.1600.000343
ORF1ab/nsp31699S1699StcTtcC1010AY.30.000099
ORF1ab/nsp31699S1699FtCttTt1010B.1.4970.003148
ORF1ab/nsp31699S1699TTctAct99All0.000002
ORF1ab/nsp31699S1699PTctCct99AY.650.004797
ORF1ab/nsp31699S1699del2TCt--t99B.1.20.000079
ORF1ab/nsp31699S1699StcTtcG99B.1.2210.000639
ORF1ab/nsp31699S1699PTctCct99B.1.3240.014446
ORF1ab/nsp31699S1699FtCttTt88AY.260.000226
ORF1ab/nsp31699S1699FtCttTt88B.1.1.2840.000859
ORF1ab/nsp31699S1699PTctCct88B.1.36.220.009662
ORF1ab/nsp31699S1699delTCT---88B.1.617.20.00003
ORF1ab/nsp31699S1699FtCttTt77AY.200.000272
ORF1ab/nsp31699S1699del2TCt--t77AY.440.000043
ORF1ab/nsp31699S1699FtCttTt77B.1.4290.000165
ORF1ab/nsp31699S1699FtCttTt77B.1.617.10.000903
ORF1ab/nsp31699S1699PTctCct77B.1.617.20.000026
ORF1ab/nsp31699S1699LtCTtTA36All0.000001
ORF1ab/nsp31699S1699LTCTCTC26All0
ORF1ab/nsp31699S1699LTCtCTt16All0
ORF1ab/nsp31699S1699PTctCct66AM.40.021429
ORF1ab/nsp31699S1699FtCttTt66AY.1200.000223
ORF1ab/nsp31699S1699FtCttTt66AY.4.20.00013
ORF1ab/nsp31699S1699StcTtcC56AY.440.00003
ORF1ab/nsp31699S1699StcTtcG16AY.440.000006
ORF1ab/nsp31699S1699del1tCtt-t66B.1.1.70.000005
ORF1ab/nsp31699S1699StcTtcC66B.1.20.000053
ORF1ab/nsp31699S1699FtCttTt66B.1.360.000875
ORF1ab/nsp31699S1699LtCTtTA350.166667
ORF1ab/nsp31699S1699LTCTCTC250.111111
ORF1ab/nsp31699S1699StcTtcC55AY.1190.000177
ORF1ab/nsp31699S1699StcTtcC55AY.840.002187
ORF1ab/nsp31699S1699FtCttTt55B.1.1.5190.000199
ORF1ab/nsp31699S1699ATctGct55B.1.1.70.000004
ORF1ab/nsp31699S1699PTctCct55B.1.1770.000066
ORF1ab/nsp31699S1699FtCttTt55B.1.3750.004098
ORF1ab/nsp31699S1699FtCttTt55B.1.4740.009506
ORF1ab/nsp31699S1699TTctAct55B.1.5270.018519
ORF1ab/nsp31699S1699FtCttTt55B.1.6190.004355
ORF1ab/nsp31699S1699FtCttTt55P.1.100.001347
ORF1ab/nsp31699S1699YtCttAt440.222222
ORF1ab/nsp31699S1699ITCtATt24All0
ORF1ab/nsp31699S1699ITCTATC24All0
ORF1ab/nsp31699S1699FtCttTt44AY.1020.000106
ORF1ab/nsp31699S1699del2TCt--t44AY.430.000018
ORF1ab/nsp31699S1699YtCttAt44B.10.000037
ORF1ab/nsp31699S1699StcTtcC24B.10.000018
ORF1ab/nsp31699S1699StcTtcA14B.10.000009
ORF1ab/nsp31699S1699StcTtcG14B.10.000009
ORF1ab/nsp31699S1699YtCttAt44B.1.1.70.000004
ORF1ab/nsp31699S1699FtCttTt44B.1.177.860.000734
ORF1ab/nsp31699S1699FtCttTt44B.1.3960.002823
ORF1ab/nsp31699S1699FtCttTt330.166667
ORF1ab/nsp31699S1699StcTtcC33AY.1080.003308
ORF1ab/nsp31699S1699ATctGct33AY.20.001068
ORF1ab/nsp31699S1699StcTtcG33AY.250.000018
ORF1ab/nsp31699S1699YtCttAt33AY.290.000047
ORF1ab/nsp31699S1699PTctCct33AY.430.000013
ORF1ab/nsp31699S1699StcTtcC23AY.450.000243
ORF1ab/nsp31699S1699StcTtcG13AY.450.000122
ORF1ab/nsp31699S1699FtCttTt33AY.46.60.000217
ORF1ab/nsp31699S1699FtCttTt33AY.50.000062
ORF1ab/nsp31699S1699PTctCct33AY.60.000123
ORF1ab/nsp31699S1699StcTtcC33AY.750.000168
ORF1ab/nsp31699S1699YtCttAt33AY.9.20.00011
ORF1ab/nsp31699S1699FtCttTt33B.1.1.1010.03
ORF1ab/nsp31699S1699delTCT---33B.1.1770.00004
ORF1ab/nsp31699S1699del1tCtt-t33B.1.20.000026
ORF1ab/nsp31699S1699FtCttTt33B.1.2340.000396
ORF1ab/nsp31699S1699FtCttTt33B.1.5960.000261
ORF1ab/nsp31699S1699StcTtcA23P.10.000032
ORF1ab/nsp31699S1699StcTtcG13P.10.000016
ORF1ab/nsp31699S1699FtCttTt33P.20.00056
ORF1ab/nsp31699S1699DTCtGAt220.111111
ORF1ab/nsp31699S1699ATctGct220.111111
ORF1ab/nsp31699S1699ITCTATC220.111111
ORF1ab/nsp31699S1699delTCT---220.111111
ORF1ab/nsp31699S1699XtCTtAA220.111111
ORF1ab/nsp31699S1699VTCTGTC220.111111
ORF1ab/nsp31699S1699XtCTtAA22All0
ORF1ab/nsp31699S1699DTCtGAt22All0
ORF1ab/nsp31699S1699CtCttGt22All0
ORF1ab/nsp31699S1699VTCTGTC22All0
ORF1ab/nsp31699S1699PTctCct22AY.1000.000092
ORF1ab/nsp31699S1699PTctCct22AY.1030.000012
ORF1ab/nsp31699S1699FtCttTt22AY.116.10.000623
ORF1ab/nsp31699S1699FtCttTt22AY.1170.000169
ORF1ab/nsp31699S1699delTCT---22AY.190.002281
ORF1ab/nsp31699S1699del2TCt--t22AY.230.000139
ORF1ab/nsp31699S1699PTctCct22AY.30.00002
ORF1ab/nsp31699S1699PTctCct22AY.320.001065
ORF1ab/nsp31699S1699StcTtcG22AY.330.000134
ORF1ab/nsp31699S1699FtCttTt22AY.380.000999
ORF1ab/nsp31699S1699del2TCt--t22AY.390.000049
ORF1ab/nsp31699S1699ATctGct22AY.4.40.000818
ORF1ab/nsp31699S1699YtCttAt22AY.430.000009
ORF1ab/nsp31699S1699delTCT---22AY.430.000009
ORF1ab/nsp31699S1699delTCT---22AY.46.20.001271
ORF1ab/nsp31699S1699del1tCtt-t22AY.46.60.000144
ORF1ab/nsp31699S1699del2TCt--t22AY.46.60.000144
ORF1ab/nsp31699S1699FtCttTt22AY.470.000062
ORF1ab/nsp31699S1699StcTtcC22AY.5.30.000675
ORF1ab/nsp31699S1699FtCttTt22AY.590.001059
ORF1ab/nsp31699S1699StcTtcC22AY.980.000158
ORF1ab/nsp31699S1699FtCttTt22B0.000256
ORF1ab/nsp31699S1699del2TCt--t22B.10.000018
ORF1ab/nsp31699S1699delTCT---22B.10.000018
ORF1ab/nsp31699S1699delTCT---22B.1.1.2360.013793
ORF1ab/nsp31699S1699FtCttTt22B.1.1.2650.006309
ORF1ab/nsp31699S1699FtCttTt22B.1.1.3060.000877
ORF1ab/nsp31699S1699FtCttTt22B.1.1.3800.019608
ORF1ab/nsp31699S1699StcTtcG12B.1.1.5190.00004
ORF1ab/nsp31699S1699StcTtcC12B.1.1.5190.00004
ORF1ab/nsp31699S1699YtCttAt22B.1.1600.000062
ORF1ab/nsp31699S1699StcTtcC22B.1.1600.000062
ORF1ab/nsp31699S1699FtCttTt22B.1.1770.000026
ORF1ab/nsp31699S1699StcTtcC22B.1.1770.000026
ORF1ab/nsp31699S1699FtCttTt22B.1.177.180.00232
ORF1ab/nsp31699S1699delTCT---22B.1.177.210.000153
ORF1ab/nsp31699S1699delTCT---22B.1.177.570.000562
ORF1ab/nsp31699S1699ATctGct22B.1.20.000018
ORF1ab/nsp31699S1699FtCttTt22B.1.2100.004264
ORF1ab/nsp31699S1699FtCttTt22B.1.2430.000139
ORF1ab/nsp31699S1699delTCT---22B.1.2580.000133
ORF1ab/nsp31699S1699StcTtcC22B.1.3110.000549
ORF1ab/nsp31699S1699PTctCct22B.1.3510.000059
ORF1ab/nsp31699S1699FtCttTt22B.1.36.360.001204
ORF1ab/nsp31699S1699StcTtcC12B.1.4290.000024
ORF1ab/nsp31699S1699StcTtcG12B.1.4290.000024
ORF1ab/nsp31699S1699FtCttTt22B.1.4700.002809
ORF1ab/nsp31699S1699FtCttTt22B.1.5240.002813
ORF1ab/nsp31699S1699FtCttTt22B.1.5250.000226
ORF1ab/nsp31699S1699YtCttAt22B.1.5260.000047
ORF1ab/nsp31699S1699PTctCct22B.1.5260.000047
ORF1ab/nsp31699S1699FtCttTt22C.10.004785
ORF1ab/nsp31699S1699StcTtcC22C.370.000232
ORF1ab/nsp31699S1699StcTtcA110.055556
ORF1ab/nsp31699S1699delTCT---11A0.000387
ORF1ab/nsp31699S1699StcTtcC11A.10.000282
ORF1ab/nsp31699S1699NTCtAAt11All0
ORF1ab/nsp31699S1699FtCttTt11AY.1000.000046
ORF1ab/nsp31699S1699StcTtcG11AY.1000.000046
ORF1ab/nsp31699S1699del1tCtt-t11AY.1030.000006
ORF1ab/nsp31699S1699FtCttTt11AY.1100.000113
ORF1ab/nsp31699S1699delTCT---11AY.1110.000183
ORF1ab/nsp31699S1699del2TCt--t11AY.1130.000142
ORF1ab/nsp31699S1699FtCttTt11AY.1130.000142
ORF1ab/nsp31699S1699FtCttTt11AY.1140.000231
ORF1ab/nsp31699S1699PTctCct11AY.1140.000231
ORF1ab/nsp31699S1699FtCttTt11AY.1180.000063
ORF1ab/nsp31699S1699FtCttTt11AY.1190.000035
ORF1ab/nsp31699S1699PTctCct11AY.1190.000035
ORF1ab/nsp31699S1699del2TCt--t11AY.1200.000037
ORF1ab/nsp31699S1699delTCT---11AY.1200.000037
ORF1ab/nsp31699S1699StcTtcC11AY.120.10.000321
ORF1ab/nsp31699S1699del2TCt--t11AY.120.10.000321
ORF1ab/nsp31699S1699del2TCt--t11AY.1210.000135
ORF1ab/nsp31699S1699PTctCct11AY.130.000161
ORF1ab/nsp31699S1699FtCttTt11AY.130.000161
ORF1ab/nsp31699S1699del2TCt--t11AY.140.000088
ORF1ab/nsp31699S1699FtCttTt11AY.140.000088
ORF1ab/nsp31699S1699StcTtcG11AY.200.000039
ORF1ab/nsp31699S1699FtCttTt11AY.230.00007
ORF1ab/nsp31699S1699StcTtcC11AY.230.00007
ORF1ab/nsp31699S1699PTctCct11AY.250.000006
ORF1ab/nsp31699S1699delTCT---11AY.330.000067
ORF1ab/nsp31699S1699PTctCct11AY.350.000233
ORF1ab/nsp31699S1699StcTtcC11AY.360.000148
ORF1ab/nsp31699S1699FtCttTt11AY.390.000025
ORF1ab/nsp31699S1699FtCttTt11AY.39.10.00004
ORF1ab/nsp31699S1699del2TCT--G11AY.40.000002
ORF1ab/nsp31699S1699CtCttGt11AY.40.000002
ORF1ab/nsp31699S1699PTctCct11AY.420.00004
ORF1ab/nsp31699S1699ATctGct11AY.430.000004
ORF1ab/nsp31699S1699del1tCtt-t11AY.440.000006
ORF1ab/nsp31699S1699PTctCct11AY.440.000006
ORF1ab/nsp31699S1699ITCtATt11AY.440.000006
ORF1ab/nsp31699S1699FtCttTt11AY.440.000006
ORF1ab/nsp31699S1699delTCT---11AY.440.000006
ORF1ab/nsp31699S1699YtCttAt11AY.440.000006
ORF1ab/nsp31699S1699FtCttTt11AY.460.000104
ORF1ab/nsp31699S1699StcTtcC11AY.46.60.000072
ORF1ab/nsp31699S1699PTctCct11AY.470.000031
ORF1ab/nsp31699S1699PTctCct11AY.50.000021
ORF1ab/nsp31699S1699delTCT---11AY.50.000021
ORF1ab/nsp31699S1699delTCT---11AY.520.000814
ORF1ab/nsp31699S1699del1tCtt-t11AY.540.000095
ORF1ab/nsp31699S1699StcTtcG11AY.540.000095
ORF1ab/nsp31699S1699StcTtcC11AY.580.000907
ORF1ab/nsp31699S1699delTCT---11AY.60.000041
ORF1ab/nsp31699S1699FtCttTt11AY.60.000041
ORF1ab/nsp31699S1699TTctAct11AY.670.000464
ORF1ab/nsp31699S1699PTctCct11AY.670.000464
ORF1ab/nsp31699S1699FtCttTt11AY.680.000274
ORF1ab/nsp31699S1699FtCttTt11AY.750.000056
ORF1ab/nsp31699S1699YtCttAt11AY.790.001211
ORF1ab/nsp31699S1699delTCT---11AY.810.001992
ORF1ab/nsp31699S1699delTCT---11AY.840.000437
ORF1ab/nsp31699S1699FtCttTt11AY.90.000068
ORF1ab/nsp31699S1699delTCT---11AY.90.000068
ORF1ab/nsp31699S1699del2TCt--t11AY.9.10.000084
ORF1ab/nsp31699S1699PTctCct11AY.9.10.000084
ORF1ab/nsp31699S1699del2TCt--t11AY.9.20.000037
ORF1ab/nsp31699S1699FtCttTt11AY.910.00073
ORF1ab/nsp31699S1699ATctGct11AY.980.000079
ORF1ab/nsp31699S1699del2TCt--t11AY.980.000079
ORF1ab/nsp31699S1699del2TCt--t11AY.98.10.000048
ORF1ab/nsp31699S1699delTCT---11AY.990.001049
ORF1ab/nsp31699S1699delTCT---11AY.99.10.001553
ORF1ab/nsp31699S1699FtCttTt11AY.99.20.000092
ORF1ab/nsp31699S1699FtCttTt11AZ.20.000821
ORF1ab/nsp31699S1699PTctCct11B0.000128
ORF1ab/nsp31699S1699delTCT---11B.1.10.000018
ORF1ab/nsp31699S1699CtCttGt11B.1.10.000018
ORF1ab/nsp31699S1699FtCttTt11B.1.1.2160.00089
ORF1ab/nsp31699S1699FtCttTt11B.1.1.2250.007194
ORF1ab/nsp31699S1699PTctCct11B.1.1.2430.004082
ORF1ab/nsp31699S1699FtCttTt11B.1.1.2690.001353
ORF1ab/nsp31699S1699FtCttTt11B.1.1.2750.011236
ORF1ab/nsp31699S1699FtCttTt11B.1.1.2790.001121
ORF1ab/nsp31699S1699PTctCct11B.1.1.2840.000107
ORF1ab/nsp31699S1699FtCttTt11B.1.1.3010.001179
ORF1ab/nsp31699S1699FtCttTt11B.1.1.3120.001912
ORF1ab/nsp31699S1699FtCttTt11B.1.1.3340.016393
ORF1ab/nsp31699S1699FtCttTt11B.1.1.3660.015873
ORF1ab/nsp31699S1699PTctCct11B.1.1.370.000193
ORF1ab/nsp31699S1699FtCttTt11B.1.1.370.000193
ORF1ab/nsp31699S1699PTctCct11B.1.1.390.00051
ORF1ab/nsp31699S1699FtCttTt11B.1.1.3970.002252
ORF1ab/nsp31699S1699StcTtcC11B.1.1.4090.002833
ORF1ab/nsp31699S1699FtCttTt11B.1.1.4340.000349
ORF1ab/nsp31699S1699FtCttTt11B.1.1.440.00241
ORF1ab/nsp31699S1699StcTtcC11B.1.1.500.000679
ORF1ab/nsp31699S1699ITCtATt11B.1.1.70.000001
ORF1ab/nsp31699S1699TTctAct11B.1.1.70.000001
ORF1ab/nsp31699S1699PTctCct11B.1.1.700.000341
ORF1ab/nsp31699S1699FtCttTt11B.1.1420.002899
ORF1ab/nsp31699S1699FtCttTt11B.1.1570.002985
ORF1ab/nsp31699S1699StcTtcC11B.1.160.160.000929
ORF1ab/nsp31699S1699FtCttTt11B.1.177.120.000152
ORF1ab/nsp31699S1699delTCT---11B.1.177.180.00116
ORF1ab/nsp31699S1699delTCT---11B.1.177.40.000211
ORF1ab/nsp31699S1699FtCttTt11B.1.177.410.0025
ORF1ab/nsp31699S1699StcTtcC11B.1.177.440.000519
ORF1ab/nsp31699S1699TTctAct11B.1.177.560.000668
ORF1ab/nsp31699S1699FtCttTt11B.1.177.60.000977
ORF1ab/nsp31699S1699delTCT---11B.1.177.60.000977
ORF1ab/nsp31699S1699delTCT---11B.1.177.630.002703
ORF1ab/nsp31699S1699ATctGct11B.1.177.70.000165
ORF1ab/nsp31699S1699StcTtcC11B.1.177.720.00339
ORF1ab/nsp31699S1699delTCT---11B.1.177.830.001481
ORF1ab/nsp31699S1699StcTtcC11B.1.177.860.000183
ORF1ab/nsp31699S1699FtCttTt11B.1.177.90.001332
ORF1ab/nsp31699S1699delTCT---11B.1.1790.003759
ORF1ab/nsp31699S1699delTCT---11B.1.20.000009
ORF1ab/nsp31699S1699FtCttTt11B.1.2210.000071
ORF1ab/nsp31699S1699YtCttAt11B.1.2210.000071
ORF1ab/nsp31699S1699PTctCct11B.1.221.30.000833
ORF1ab/nsp31699S1699StcTtcC11B.1.2340.000132
ORF1ab/nsp31699S1699StcTtcC11B.1.2430.00007
ORF1ab/nsp31699S1699delTCT---11B.1.258.100.011364
ORF1ab/nsp31699S1699FtCttTt11B.1.258.140.00098
ORF1ab/nsp31699S1699PTctCct11B.1.258.30.001675
ORF1ab/nsp31699S1699FtCttTt11B.1.2650.001271
ORF1ab/nsp31699S1699FtCttTt11B.1.2840.013158
ORF1ab/nsp31699S1699FtCttTt11B.1.3110.000275
ORF1ab/nsp31699S1699StcTtcA11B.1.3460.001311
ORF1ab/nsp31699S1699StcTtcG11B.1.3510.00003
ORF1ab/nsp31699S1699del2TCt--t11B.1.3510.00003
ORF1ab/nsp31699S1699StcTtcC11B.1.351.30.000876
ORF1ab/nsp31699S1699delTCT---11B.1.360.000146
ORF1ab/nsp31699S1699TTctAct11B.1.36.100.004785
ORF1ab/nsp31699S1699FtCttTt11B.1.36.170.000494
ORF1ab/nsp31699S1699StcTtcC11B.1.36.80.001
ORF1ab/nsp31699S1699ATctGct11B.1.3620.001541
ORF1ab/nsp31699S1699PTctCct11B.1.3950.007042
ORF1ab/nsp31699S1699PTctCct11B.1.3980.002976
ORF1ab/nsp31699S1699delTCT---11B.1.4090.000781
ORF1ab/nsp31699S1699PTctCct11B.1.4110.003704
ORF1ab/nsp31699S1699FtCttTt11B.1.416.10.001563
ORF1ab/nsp31699S1699del1tCtt-t11B.1.4260.001009
ORF1ab/nsp31699S1699PTctCct11B.1.4290.000024
ORF1ab/nsp31699S1699FtCttTt11B.1.4590.004082
ORF1ab/nsp31699S1699FtCttTt11B.1.4660.023256
ORF1ab/nsp31699S1699PTctCct11B.1.4990.00105
ORF1ab/nsp31699S1699FtCttTt11B.1.5010.007353
ORF1ab/nsp31699S1699StcTtcC11B.1.5260.000024
ORF1ab/nsp31699S1699FtCttTt11B.1.5260.000024
ORF1ab/nsp31699S1699FtCttTt11B.1.5340.0125
ORF1ab/nsp31699S1699delTCT---11B.1.5610.000397
ORF1ab/nsp31699S1699FtCttTt11B.1.5750.000303
ORF1ab/nsp31699S1699StcTtcG11B.1.5800.004065
ORF1ab/nsp31699S1699PTctCct11B.1.5880.00091
ORF1ab/nsp31699S1699FtCttTt11B.1.5950.000261
ORF1ab/nsp31699S1699YtCttAt11B.1.5960.000087
ORF1ab/nsp31699S1699StcTtcC11B.1.5960.000087
ORF1ab/nsp31699S1699PTctCct11B.1.617.10.000129
ORF1ab/nsp31699S1699del2TCt--t11B.1.617.20.000004
ORF1ab/nsp31699S1699NTCtAAt11B.1.617.20.000004
ORF1ab/nsp31699S1699FtCttTt11B.1.6210.000089
ORF1ab/nsp31699S1699FtCttTt11B.1.6230.000536
ORF1ab/nsp31699S1699StcTtcC11B.1.6230.000536
ORF1ab/nsp31699S1699FtCttTt11B.1.6370.000073
ORF1ab/nsp31699S1699ATctGct11B.1.6370.000073
ORF1ab/nsp31699S1699StcTtcA11B.320.027027
ORF1ab/nsp31699S1699delTCT---11B.4.40.018868
ORF1ab/nsp31699S1699LTCtCTt11C.350.000774
ORF1ab/nsp31699S1699ATctGct11C.360.000911
ORF1ab/nsp31699S1699PTctCct11D.20.000075
ORF1ab/nsp31699S1699FtCttTt11D.20.000075
ORF1ab/nsp31699S1699delTCT---11P.10.000016
ORF1ab/nsp31699S1699FtCttTt11P.1.150.000232
ORF1ab/nsp31699S1699FtCttTt11P.1.160.000374
ORF1ab/nsp31699S1699FtCttTt11P.70.004367
ORF1ab/nsp31699S1699FtCttTt11Q.30.000145
ORF1ab/nsp31699S1699FtCttTt11Q.40.000455
ORF1ab/nsp31699S1699FtCttTt11Q.80.000165
ORF1ab/nsp31699S1699FtCttTt11W.40.001351