CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1693

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31693K1693NK2511NnonsynaaGaaT13366133050.9954367796-7798
ORF1ab/nsp31693K1693NK2511NnonsynaaGaaC13366610.004563827796-7798
ORF1ab/nsp31693K1693RK2511RnonsynaAgaGg7317270.9945287796-7798
ORF1ab/nsp31693K1693RK2511RnonsynaAGaGA73120.002735987796-7798
ORF1ab/nsp31693K1693RK2511RnonsynAAgCGg73120.002735987796-7798
ORF1ab/nsp31693K1693KK2511KsynaaGaaA26826817796-7798
ORF1ab/nsp31693K1693QK2511QnonsynAagCag2452440.9959187796-7798
ORF1ab/nsp31693K1693QK2511QnonsynAaGCaA24510.004081637796-7798
ORF1ab/nsp31693K1693delK2511deldelAAG---989817796-7798
ORF1ab/nsp31693K1693TK2511TnonsynaAgaCg616117796-7798
ORF1ab/nsp31693K1693EK2511EnonsynAagGag545417796-7798
ORF1ab/nsp31693K1693MK2511MnonsynaAgaTg5517796-7798
ORF1ab/nsp31693K1693del1K2511del1delaaGaa-3317796-7798
ORF1ab/nsp31693K1693XK2511XnonsynAagTag2217796-7798
ORF1ab/nsp31693K1693SK2511SnonsynaAGaGT2217796-7798
ORF1ab/nsp31693K1693PK2511PnonsynAAGCCT1117796-7798
ORF1ab/nsp31693K1693del2K2511del2delAAg--g1117796-7798

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31693K1693NaaGaaT1330513366All0.002545
ORF1ab/nsp31693K1693NaaGaaC6113366All0.000012
ORF1ab/nsp31693K1693NaaGaaT32043204B.1.1.3180.966807
ORF1ab/nsp31693K1693NaaGaaT12091209AZ.20.992611
ORF1ab/nsp31693K1693NaaGaaT11501150AZ.10.997398
ORF1ab/nsp31693K1693NaaGaaT968973B.1.1.70.000867
ORF1ab/nsp31693K1693NaaGaaC5973B.1.1.70.000004
ORF1ab/nsp31693K1693RaAgaGg727731All0.000139
ORF1ab/nsp31693K1693RaAGaGA2731All0
ORF1ab/nsp31693K1693RAAgCGg2731All0
ORF1ab/nsp31693K1693NaaGaaT653653AZ.30.992401
ORF1ab/nsp31693K1693NaaGaaT633633AY.440.003853
ORF1ab/nsp31693K1693NaaGaaT476476B.1.6370.034783
ORF1ab/nsp31693K1693RaAgaGg465465AY.330.031052
ORF1ab/nsp31693K1693NaaGaaT398415AY.40.000619
ORF1ab/nsp31693K1693NaaGaaC17415AY.40.000026
ORF1ab/nsp31693K1693NaaGaaT332333B.1.617.20.00125
ORF1ab/nsp31693K1693NaaGaaC1333B.1.617.20.000004
ORF1ab/nsp31693K1693NaaGaaT296296B.1.1.2580.964169
ORF1ab/nsp31693K1693NaaGaaT283283AZ.40.949664
ORF1ab/nsp31693K1693NaaGaaT280280AZ.50.982456
ORF1ab/nsp31693K1693KaaGaaA268268All0.000051
ORF1ab/nsp31693K1693QAagCag244245All0.000047
ORF1ab/nsp31693K1693QAaGCaA1245All0
ORF1ab/nsp31693K1693QAagCag227227AY.40.000353
ORF1ab/nsp31693K1693NaaGaaT214217AY.430.000948
ORF1ab/nsp31693K1693NaaGaaC3217AY.430.000013
ORF1ab/nsp31693K1693NaaGaaT191191AY.1030.001186
ORF1ab/nsp31693K1693NaaGaaT189191AY.250.001137
ORF1ab/nsp31693K1693NaaGaaC2191AY.250.000012
ORF1ab/nsp31693K1693NaaGaaT167167D.30.988166
ORF1ab/nsp31693K1693NaaGaaT157159B.10.001438
ORF1ab/nsp31693K1693NaaGaaC2159B.10.000018
ORF1ab/nsp31693K1693NaaGaaT153153AY.1200.005688
ORF1ab/nsp31693K1693NaaGaaT121121AZ.2.10.98374
ORF1ab/nsp31693K1693NaaGaaT121121B.1.20.001065
ORF1ab/nsp31693K1693NaaGaaT118118AZ.60.991597
ORF1ab/nsp31693K1693KaaGaaA118118B.1.1.70.000106
ORF1ab/nsp31693K1693NaaGaaT114114AY.9.20.004187
ORF1ab/nsp31693K1693NaaGaaT107110B.1.10.001941
ORF1ab/nsp31693K1693NaaGaaC3110B.1.10.000054
ORF1ab/nsp31693K1693delAAG---9898All0.000019
ORF1ab/nsp31693K1693NaaGaaT9090B.1.2290.873786
ORF1ab/nsp31693K1693NaaGaaT8181AY.390.002002
ORF1ab/nsp31693K1693NaaGaaT7171AY.50.001466
ORF1ab/nsp31693K1693NaaGaaT6263AY.1020.001644
ORF1ab/nsp31693K1693NaaGaaC163AY.1020.000027
ORF1ab/nsp31693K1693TaAgaCg6161All0.000012
ORF1ab/nsp31693K1693NaaGaaT6161AY.30.000607
ORF1ab/nsp31693K1693NaaGaaT6060AY.98.10.002906
ORF1ab/nsp31693K1693NaaGaaT5960P.10.000929
ORF1ab/nsp31693K1693NaaGaaC160P.10.000016
ORF1ab/nsp31693K1693EAagGag5454All0.00001
ORF1ab/nsp31693K1693NaaGaaT4949AY.690.009147
ORF1ab/nsp31693K1693NaaGaaT4949B.1.1770.000645
ORF1ab/nsp31693K1693NaaGaaT4646AY.90.003109
ORF1ab/nsp31693K1693RaAgaGg4346B.1.1.70.000038
ORF1ab/nsp31693K1693RAAgCGg246B.1.1.70.000002
ORF1ab/nsp31693K1693RaAGaGA146B.1.1.70.000001
ORF1ab/nsp31693K1693delAAG---4242B.1.1.70.000038
ORF1ab/nsp31693K1693RaAgaGg4040AY.1030.000248
ORF1ab/nsp31693K1693RaAgaGg3939AY.46.60.002816
ORF1ab/nsp31693K1693NaaGaaT3838AY.1190.001342
ORF1ab/nsp31693K1693NaaGaaT3737B.1.564.10.05836
ORF1ab/nsp31693K1693NaaGaaT3232B.1.438.10.003432
ORF1ab/nsp31693K1693KaaGaaA3232B.1.619.10.020526
ORF1ab/nsp31693K1693NaaGaaT3131Q.10.003916
ORF1ab/nsp31693K1693NaaGaaT2929B.1.1.3170.011939
ORF1ab/nsp31693K1693NaaGaaT2828B.1.3710.031425
ORF1ab/nsp31693K1693NaaGaaT2727C.360.02459
ORF1ab/nsp31693K1693NaaGaaT2223AY.1210.002977
ORF1ab/nsp31693K1693NaaGaaC123AY.1210.000135
ORF1ab/nsp31693K1693NaaGaaT2323B.1.177.830.034074
ORF1ab/nsp31693K1693RaAgaGg2222AY.430.000097
ORF1ab/nsp31693K1693NaaGaaT1821B.1.360.002626
ORF1ab/nsp31693K1693NaaGaaC321B.1.360.000438
ORF1ab/nsp31693K1693NaaGaaT2020AY.5.30.006748
ORF1ab/nsp31693K1693NaaGaaT2020B.1.3510.000595
ORF1ab/nsp31693K1693NaaGaaT2020B.1.4290.000471
ORF1ab/nsp31693K1693NaaGaaT1919AY.470.000591
ORF1ab/nsp31693K1693NaaGaaT1919AY.610.001991
ORF1ab/nsp31693K1693RaAgaGg1818AY.40.000028
ORF1ab/nsp31693K1693TaAgaCg1717AY.1030.000106
ORF1ab/nsp31693K1693NaaGaaT1717AY.200.000661
ORF1ab/nsp31693K1693NaaGaaT1717N.50.030035
ORF1ab/nsp31693K1693NaaGaaT1616AY.4.50.00172
ORF1ab/nsp31693K1693RaAgaGg1616AY.440.000097
ORF1ab/nsp31693K1693NaaGaaT1415AY.290.000221
ORF1ab/nsp31693K1693NaaGaaC115AY.290.000016
ORF1ab/nsp31693K1693NaaGaaT1515AY.330.001002
ORF1ab/nsp31693K1693TaAgaCg1515P.10.000236
ORF1ab/nsp31693K1693NaaGaaT814B.1.1.5190.000318
ORF1ab/nsp31693K1693NaaGaaC614B.1.1.5190.000238
ORF1ab/nsp31693K1693NaaGaaT1414B.1.5750.004248
ORF1ab/nsp31693K1693NaaGaaT1414B.1.6230.007511
ORF1ab/nsp31693K1693KaaGaaA1414P.10.000221
ORF1ab/nsp31693K1693KaaGaaA1313AY.200.000505
ORF1ab/nsp31693K1693NaaGaaT1313AY.4.20.000282
ORF1ab/nsp31693K1693NaaGaaT1313AY.600.012195
ORF1ab/nsp31693K1693NaaGaaT1313B.1.1.3260.022887
ORF1ab/nsp31693K1693EAagGag1313B.1.1.70.000012
ORF1ab/nsp31693K1693NaaGaaT1212AY.680.003285
ORF1ab/nsp31693K1693NaaGaaT1212B.1.4270.000606
ORF1ab/nsp31693K1693NaaGaaT1212C.370.001393
ORF1ab/nsp31693K1693NaaGaaT1111AY.260.000311
ORF1ab/nsp31693K1693NaaGaaT910AY.1140.00208
ORF1ab/nsp31693K1693NaaGaaC110AY.1140.000231
ORF1ab/nsp31693K1693RaAgaGg1010AY.300.003957
ORF1ab/nsp31693K1693NaaGaaT1010AY.360.001482
ORF1ab/nsp31693K1693NaaGaaT710AY.39.10.000277
ORF1ab/nsp31693K1693NaaGaaC310AY.39.10.000119
ORF1ab/nsp31693K1693NaaGaaT1010AY.420.000402
ORF1ab/nsp31693K1693NaaGaaT1010B.1.1.2220.00204
ORF1ab/nsp31693K1693NaaGaaT1010B.1.5260.000235
ORF1ab/nsp31693K1693RaAgaGg1010B.1.617.20.000038
ORF1ab/nsp31693K1693NaaGaaT99AY.230.000628
ORF1ab/nsp31693K1693KaaGaaA99AY.40.000014
ORF1ab/nsp31693K1693NaaGaaT99AY.540.000858
ORF1ab/nsp31693K1693NaaGaaT99AY.60.00037
ORF1ab/nsp31693K1693NaaGaaT99AY.750.000504
ORF1ab/nsp31693K1693NaaGaaT99B.1.5510.011613
ORF1ab/nsp31693K1693NaaGaaT99B.1.5610.003573
ORF1ab/nsp31693K1693NaaGaaT99B.1.617.10.001161
ORF1ab/nsp31693K1693NaaGaaT99B.1.6210.000797
ORF1ab/nsp31693K1693NaaGaaT99P.20.00168
ORF1ab/nsp31693K1693NaaGaaT88A.10.002255
ORF1ab/nsp31693K1693RaAgaGg88AY.1190.000282
ORF1ab/nsp31693K1693NaaGaaT88B.1.1600.00025
ORF1ab/nsp31693K1693RaAgaGg78B.1.20.000062
ORF1ab/nsp31693K1693RaAGaGA18B.1.20.000009
ORF1ab/nsp31693K1693NaaGaaT78B.1.5760.006346
ORF1ab/nsp31693K1693NaaGaaC18B.1.5760.000907
ORF1ab/nsp31693K1693NaaGaaT88Q.30.00116
ORF1ab/nsp31693K1693KaaGaaA77AY.1030.000043
ORF1ab/nsp31693K1693NaaGaaT67AY.340.000582
ORF1ab/nsp31693K1693NaaGaaC17AY.340.000097
ORF1ab/nsp31693K1693NaaGaaT77AY.75.10.001262
ORF1ab/nsp31693K1693NaaGaaT77AY.9.10.000586
ORF1ab/nsp31693K1693RaAgaGg66AY.350.001398
ORF1ab/nsp31693K1693EAagGag66AY.40.000009
ORF1ab/nsp31693K1693KaaGaaA66AY.440.000037
ORF1ab/nsp31693K1693NaaGaaT66AY.7.10.000676
ORF1ab/nsp31693K1693NaaGaaT66AY.99.20.000553
ORF1ab/nsp31693K1693NaaGaaT56B.1.2430.000348
ORF1ab/nsp31693K1693NaaGaaC16B.1.2430.00007
ORF1ab/nsp31693K1693NaaGaaT66B.1.5370.12
ORF1ab/nsp31693K1693NaaGaaT66B.1.5960.000523
ORF1ab/nsp31693K1693NaaGaaT66P.1.140.000287
ORF1ab/nsp31693K1693NaaGaaT55A.2.50.002495
ORF1ab/nsp31693K1693NaaGaaT55A.50.009615
ORF1ab/nsp31693K1693MaAgaTg55All0.000001
ORF1ab/nsp31693K1693NaaGaaT55AY.1000.00023
ORF1ab/nsp31693K1693EAagGag55AY.250.00003
ORF1ab/nsp31693K1693KaaGaaA55AY.3.10.000426
ORF1ab/nsp31693K1693NaaGaaT55AY.460.00052
ORF1ab/nsp31693K1693NaaGaaT55AY.670.002321
ORF1ab/nsp31693K1693NaaGaaT55AY.70.00098
ORF1ab/nsp31693K1693NaaGaaT45AY.980.000316
ORF1ab/nsp31693K1693NaaGaaC15AY.980.000079
ORF1ab/nsp31693K1693RaAgaGg55B.10.000046
ORF1ab/nsp31693K1693KaaGaaA55B.1.10.000091
ORF1ab/nsp31693K1693NaaGaaT55B.1.1.2200.009294
ORF1ab/nsp31693K1693KaaGaaA55B.1.1.3890.030303
ORF1ab/nsp31693K1693NaaGaaT55B.1.177.810.000947
ORF1ab/nsp31693K1693NaaGaaT55B.1.4330.015974
ORF1ab/nsp31693K1693KaaGaaA55B.1.4990.005252
ORF1ab/nsp31693K1693NaaGaaT55B.1.5680.005556
ORF1ab/nsp31693K1693EAagGag55B.1.617.20.000019
ORF1ab/nsp31693K1693delAAG---55B.1.617.20.000019
ORF1ab/nsp31693K1693NaaGaaT44AY.1060.00134
ORF1ab/nsp31693K1693NaaGaaT44AY.1170.000338
ORF1ab/nsp31693K1693NaaGaaT44AY.16.10.00188
ORF1ab/nsp31693K1693RaAgaGg44AY.250.000024
ORF1ab/nsp31693K1693NaaGaaT44AY.270.000259
ORF1ab/nsp31693K1693delAAG---44AY.430.000018
ORF1ab/nsp31693K1693EAagGag44AY.440.000024
ORF1ab/nsp31693K1693NaaGaaT44AY.46.60.000289
ORF1ab/nsp31693K1693NaaGaaT44AY.530.00115
ORF1ab/nsp31693K1693NaaGaaT44B.1.1.10.001307
ORF1ab/nsp31693K1693NaaGaaT44B.1.1.2530.010025
ORF1ab/nsp31693K1693NaaGaaT44B.1.1.280.001245
ORF1ab/nsp31693K1693NaaGaaT34B.1.1.5230.004687
ORF1ab/nsp31693K1693NaaGaaC14B.1.1.5230.001563
ORF1ab/nsp31693K1693NaaGaaT44B.1.1.700.001364
ORF1ab/nsp31693K1693NaaGaaT44B.1.177.650.002661
ORF1ab/nsp31693K1693KaaGaaA44B.1.20.000035
ORF1ab/nsp31693K1693NaaGaaT44B.1.36.80.004
ORF1ab/nsp31693K1693NaaGaaT44B.1.5250.000453
ORF1ab/nsp31693K1693NaaGaaT44B.1.5970.018519
ORF1ab/nsp31693K1693NaaGaaT33A.270.004967
ORF1ab/nsp31693K1693del1aaGaa-33All0.000001
ORF1ab/nsp31693K1693RaAgaGg33AY.1000.000138
ORF1ab/nsp31693K1693TaAgaCg33AY.1020.00008
ORF1ab/nsp31693K1693NaaGaaT33AY.1180.000188
ORF1ab/nsp31693K1693TaAgaCg33AY.390.000074
ORF1ab/nsp31693K1693KaaGaaA33AY.430.000013
ORF1ab/nsp31693K1693RaAgaGg33AY.540.000286
ORF1ab/nsp31693K1693NaaGaaT33AY.640.001786
ORF1ab/nsp31693K1693NaaGaaT33AY.700.000626
ORF1ab/nsp31693K1693NaaGaaT33AY.80.001818
ORF1ab/nsp31693K1693QAagCag33AY.98.10.000145
ORF1ab/nsp31693K1693EAagGag33B.10.000027
ORF1ab/nsp31693K1693KaaGaaA33B.10.000027
ORF1ab/nsp31693K1693RaAgaGg33B.1.10.000054
ORF1ab/nsp31693K1693NaaGaaT33B.1.1.1760.001318
ORF1ab/nsp31693K1693NaaGaaT33B.1.1.2320.005445
ORF1ab/nsp31693K1693NaaGaaT33B.1.1.330.001263
ORF1ab/nsp31693K1693NaaGaaT33B.1.1.3820.107143
ORF1ab/nsp31693K1693NaaGaaT33B.1.2340.000396
ORF1ab/nsp31693K1693NaaGaaT33B.1.30.007853
ORF1ab/nsp31693K1693NaaGaaT33B.1.36.290.001552
ORF1ab/nsp31693K1693KaaGaaA33B.1.3690.000856
ORF1ab/nsp31693K1693NaaGaaT33B.1.5090.002597
ORF1ab/nsp31693K1693RaAgaGg33B.1.5260.000071
ORF1ab/nsp31693K1693NaaGaaT33B.1.5820.001472
ORF1ab/nsp31693K1693TaAgaCg33B.1.617.20.000011
ORF1ab/nsp31693K1693NaaGaaT33C.350.002322
ORF1ab/nsp31693K1693NaaGaaT33C.36.30.001702
ORF1ab/nsp31693K1693delAAG---220.111111
ORF1ab/nsp31693K1693TaAgaCg220.111111
ORF1ab/nsp31693K1693SaAGaGT220.111111
ORF1ab/nsp31693K1693KaaGaaA22AD.20.000438
ORF1ab/nsp31693K1693SaAGaGT22All0
ORF1ab/nsp31693K1693XAagTag22All0
ORF1ab/nsp31693K1693NaaGaaT22AY.1100.000225
ORF1ab/nsp31693K1693delAAG---22AY.1110.000366
ORF1ab/nsp31693K1693NaaGaaT22AY.120.10.000642
ORF1ab/nsp31693K1693delAAG---22AY.190.002281
ORF1ab/nsp31693K1693NaaGaaT22AY.220.004184
ORF1ab/nsp31693K1693KaaGaaA22AY.250.000012
ORF1ab/nsp31693K1693TaAgaCg22AY.30.00002
ORF1ab/nsp31693K1693NaaGaaT22AY.34.10.00102
ORF1ab/nsp31693K1693KaaGaaA22AY.350.000466
ORF1ab/nsp31693K1693RaAgaGg22AY.39.10.000079
ORF1ab/nsp31693K1693TaAgaCg22AY.40.000003
ORF1ab/nsp31693K1693NaaGaaT22AY.4.10.001475
ORF1ab/nsp31693K1693NaaGaaT22AY.4.40.000818
ORF1ab/nsp31693K1693QAagCag22AY.420.00008
ORF1ab/nsp31693K1693EAagGag22AY.430.000009
ORF1ab/nsp31693K1693delAAG---22AY.46.20.001271
ORF1ab/nsp31693K1693NaaGaaT22AY.46.40.000329
ORF1ab/nsp31693K1693RaAgaGg22AY.50.000041
ORF1ab/nsp31693K1693NaaGaaT22AY.5.40.000553
ORF1ab/nsp31693K1693NaaGaaT22AY.590.001059
ORF1ab/nsp31693K1693NaaGaaT22AY.660.002139
ORF1ab/nsp31693K1693NaaGaaT12AY.7.20.000559
ORF1ab/nsp31693K1693NaaGaaC12AY.7.20.000559
ORF1ab/nsp31693K1693NaaGaaT22AY.740.000231
ORF1ab/nsp31693K1693NaaGaaT22AY.880.001768
ORF1ab/nsp31693K1693QAagCag12AY.990.001049
ORF1ab/nsp31693K1693QAaGCaA12AY.990.001049
ORF1ab/nsp31693K1693NaaGaaT22B0.000256
ORF1ab/nsp31693K1693delAAG---22B.10.000018
ORF1ab/nsp31693K1693QAagCag22B.10.000018
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.1700.002494
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.1740.006757
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.2140.000111
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.2160.001781
ORF1ab/nsp31693K1693KaaGaaA22B.1.1.2200.003717
ORF1ab/nsp31693K1693delAAG---22B.1.1.2360.013793
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.2400.00939
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.2430.008163
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.250.001137
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.3280.033898
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.3690.000892
ORF1ab/nsp31693K1693EAagGag22B.1.1.370.000386
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.3720.001377
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.390.001019
ORF1ab/nsp31693K1693NaaGaaT22B.1.1.4130.013793
ORF1ab/nsp31693K1693KaaGaaA22B.1.1.5190.000079
ORF1ab/nsp31693K1693MaAgaTg22B.1.1.70.000002
ORF1ab/nsp31693K1693NaaGaaT22B.1.1110.00235
ORF1ab/nsp31693K1693NaaGaaT22B.1.160.120.012821
ORF1ab/nsp31693K1693delAAG---22B.1.1770.000026
ORF1ab/nsp31693K1693delAAG---22B.1.177.210.000153
ORF1ab/nsp31693K1693NaaGaaT22B.1.2060.001631
ORF1ab/nsp31693K1693NaaGaaT12B.1.2210.000071
ORF1ab/nsp31693K1693NaaGaaC12B.1.2210.000071
ORF1ab/nsp31693K1693KaaGaaA22B.1.2400.000431
ORF1ab/nsp31693K1693delAAG---22B.1.2580.000133
ORF1ab/nsp31693K1693KaaGaaA22B.1.3510.000059
ORF1ab/nsp31693K1693EAagGag22B.1.36.270.001527
ORF1ab/nsp31693K1693NaaGaaT22B.1.3690.00057
ORF1ab/nsp31693K1693KaaGaaA22B.1.4290.000047
ORF1ab/nsp31693K1693EAagGag22B.1.4290.000047
ORF1ab/nsp31693K1693NaaGaaT22B.1.4560.006536
ORF1ab/nsp31693K1693NaaGaaT22B.1.4620.014493
ORF1ab/nsp31693K1693NaaGaaT22B.1.5240.002813
ORF1ab/nsp31693K1693NaaGaaT22B.1.5640.000852
ORF1ab/nsp31693K1693RaAgaGg22B.1.5960.000174
ORF1ab/nsp31693K1693KaaGaaA22B.1.617.20.000008
ORF1ab/nsp31693K1693del1aaGaa-22B.1.6270.00404
ORF1ab/nsp31693K1693NaaGaaT22B.1.6280.000705
ORF1ab/nsp31693K1693NaaGaaT22B.1.80.003945
ORF1ab/nsp31693K1693NaaGaaT22B.30.001661
ORF1ab/nsp31693K1693NaaGaaT22B.450.007663
ORF1ab/nsp31693K1693NaaGaaT22C.160.002121
ORF1ab/nsp31693K1693NaaGaaT22P.1.170.000324
ORF1ab/nsp31693K1693KaaGaaA22P.1.70.000639
ORF1ab/nsp31693K1693NaaGaaT22Q.40.00091
ORF1ab/nsp31693K1693NaaGaaT22R.10.00018
ORF1ab/nsp31693K1693delAAG---11A0.000387
ORF1ab/nsp31693K1693NaaGaaT11A.20.000662
ORF1ab/nsp31693K1693NaaGaaT11A.2.40.003367
ORF1ab/nsp31693K1693KaaGaaA11A.2.50.000499
ORF1ab/nsp31693K1693NaaGaaT11A.280.002646
ORF1ab/nsp31693K1693PAAGCCT11All0
ORF1ab/nsp31693K1693del2AAg--g11All0
ORF1ab/nsp31693K1693NaaGaaT11AT.10.005128
ORF1ab/nsp31693K1693EAagGag11AY.1000.000046
ORF1ab/nsp31693K1693NaaGaaT11AY.1010.00049
ORF1ab/nsp31693K1693QAagCag11AY.1020.000027
ORF1ab/nsp31693K1693EAagGag11AY.1030.000006
ORF1ab/nsp31693K1693RaAgaGg11AY.1060.000335
ORF1ab/nsp31693K1693NaaGaaT11AY.1080.001103
ORF1ab/nsp31693K1693TaAgaCg11AY.1100.000113
ORF1ab/nsp31693K1693NaaGaaT11AY.1110.000183
ORF1ab/nsp31693K1693NaaGaaT11AY.1150.005208
ORF1ab/nsp31693K1693NaaGaaT11AY.1160.000287
ORF1ab/nsp31693K1693KaaGaaA11AY.1160.000287
ORF1ab/nsp31693K1693NaaGaaT11AY.116.10.000311
ORF1ab/nsp31693K1693PAAGCCT11AY.1190.000035
ORF1ab/nsp31693K1693TaAgaCg11AY.1190.000035
ORF1ab/nsp31693K1693NaaGaaT11AY.120.000316
ORF1ab/nsp31693K1693delAAG---11AY.1200.000037
ORF1ab/nsp31693K1693EAagGag11AY.120.10.000321
ORF1ab/nsp31693K1693KaaGaaA11AY.120.20.001285
ORF1ab/nsp31693K1693NaaGaaT11AY.120.20.001285
ORF1ab/nsp31693K1693NaaGaaT11AY.130.000161
ORF1ab/nsp31693K1693NaaGaaT11AY.140.000088
ORF1ab/nsp31693K1693NaaGaaT11AY.170.008197
ORF1ab/nsp31693K1693NaaGaaT11AY.240.000431
ORF1ab/nsp31693K1693delAAG---11AY.250.000006
ORF1ab/nsp31693K1693TaAgaCg11AY.250.000006
ORF1ab/nsp31693K1693MaAgaTg11AY.290.000016
ORF1ab/nsp31693K1693NaaGaaT11AY.29.10.000221
ORF1ab/nsp31693K1693RaAgaGg11AY.30.00001
ORF1ab/nsp31693K1693NaaGaaT11AY.3.10.000085
ORF1ab/nsp31693K1693delAAG---11AY.330.000067
ORF1ab/nsp31693K1693KaaGaaA11AY.340.000097
ORF1ab/nsp31693K1693NaaGaaT11AY.350.000233
ORF1ab/nsp31693K1693QAagCag11AY.380.000499
ORF1ab/nsp31693K1693NaaGaaT11AY.380.000499
ORF1ab/nsp31693K1693XAagTag11AY.40.000002
ORF1ab/nsp31693K1693delAAG---11AY.40.000002
ORF1ab/nsp31693K1693NaaGaaT11AY.4.30.000842
ORF1ab/nsp31693K1693delAAG---11AY.4.50.000107
ORF1ab/nsp31693K1693delAAG---11AY.420.00004
ORF1ab/nsp31693K1693TaAgaCg11AY.430.000004
ORF1ab/nsp31693K1693TaAgaCg11AY.440.000006
ORF1ab/nsp31693K1693delAAG---11AY.440.000006
ORF1ab/nsp31693K1693NaaGaaT11AY.450.000122
ORF1ab/nsp31693K1693RaAgaGg11AY.450.000122
ORF1ab/nsp31693K1693QAagCag11AY.460.000104
ORF1ab/nsp31693K1693NaaGaaT11AY.46.20.000635
ORF1ab/nsp31693K1693NaaGaaT11AY.46.50.000198
ORF1ab/nsp31693K1693TaAgaCg11AY.470.000031
ORF1ab/nsp31693K1693KaaGaaA11AY.50.000021
ORF1ab/nsp31693K1693delAAG---11AY.50.000021
ORF1ab/nsp31693K1693NaaGaaT11AY.520.000814
ORF1ab/nsp31693K1693delAAG---11AY.520.000814
ORF1ab/nsp31693K1693NaaGaaT11AY.550.000917
ORF1ab/nsp31693K1693TaAgaCg11AY.560.001605
ORF1ab/nsp31693K1693NaaGaaT11AY.580.000907
ORF1ab/nsp31693K1693RaAgaGg11AY.590.00053
ORF1ab/nsp31693K1693TaAgaCg11AY.60.000041
ORF1ab/nsp31693K1693delAAG---11AY.60.000041
ORF1ab/nsp31693K1693NaaGaaT11AY.620.000436
ORF1ab/nsp31693K1693NaaGaaT11AY.650.000533
ORF1ab/nsp31693K1693del1aaGaa-11AY.670.000464
ORF1ab/nsp31693K1693NaaGaaT11AY.710.000475
ORF1ab/nsp31693K1693NaaGaaT11AY.770.001127
ORF1ab/nsp31693K1693NaaGaaT11AY.790.001211
ORF1ab/nsp31693K1693delAAG---11AY.810.001992
ORF1ab/nsp31693K1693NaaGaaT11AY.840.000437
ORF1ab/nsp31693K1693delAAG---11AY.840.000437
ORF1ab/nsp31693K1693NaaGaaT11AY.850.000427
ORF1ab/nsp31693K1693delAAG---11AY.90.000068
ORF1ab/nsp31693K1693NaaGaaT11AY.910.00073
ORF1ab/nsp31693K1693TaAgaCg11AY.920.000287
ORF1ab/nsp31693K1693NaaGaaT11AY.920.000287
ORF1ab/nsp31693K1693RaAgaGg11AY.930.000273
ORF1ab/nsp31693K1693NaaGaaT11AY.930.000273
ORF1ab/nsp31693K1693KaaGaaA11AY.990.001049
ORF1ab/nsp31693K1693RaAgaGg11B0.000128
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ORF1ab/nsp31693K1693EAagGag11B.1.10.000018
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.1420.017544
ORF1ab/nsp31693K1693MaAgaTg11B.1.1.1980.001468
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.2310.003096
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.2360.006897
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.2370.005405
ORF1ab/nsp31693K1693KaaGaaA11B.1.1.250.000569
ORF1ab/nsp31693K1693RaAgaGg11B.1.1.2530.002506
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.3040.002809
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.3050.003861
ORF1ab/nsp31693K1693KaaGaaA11B.1.1.3060.000438
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.3110.000358
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.370.000193
ORF1ab/nsp31693K1693KaaGaaA11B.1.1.4020.011111
ORF1ab/nsp31693K1693NaaGaaC11B.1.1.4120.007634
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.4200.001006
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.4320.001266
ORF1ab/nsp31693K1693delAAG---11B.1.1.460.004367
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.500.000679
ORF1ab/nsp31693K1693RaAgaGg11B.1.1.5190.00004
ORF1ab/nsp31693K1693NaaGaaC11B.1.1.5260.003546
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.570.011494
ORF1ab/nsp31693K1693NaaGaaT11B.1.1.630.000386
ORF1ab/nsp31693K1693XAagTag11B.1.1.70.000001
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ORF1ab/nsp31693K1693QAagCag11B.1.1.70.000001
ORF1ab/nsp31693K1693NaaGaaT11B.1.120.008
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ORF1ab/nsp31693K1693EAagGag11B.1.1570.002985
ORF1ab/nsp31693K1693KaaGaaA11B.1.1600.000031
ORF1ab/nsp31693K1693NaaGaaT11B.1.160.300.002976
ORF1ab/nsp31693K1693NaaGaaT11B.1.1700.00431
ORF1ab/nsp31693K1693delAAG---11B.1.177.180.00116
ORF1ab/nsp31693K1693NaaGaaT11B.1.177.210.000076
ORF1ab/nsp31693K1693NaaGaaT11B.1.177.320.00135
ORF1ab/nsp31693K1693KaaGaaA11B.1.177.40.000211
ORF1ab/nsp31693K1693delAAG---11B.1.177.40.000211
ORF1ab/nsp31693K1693delAAG---11B.1.177.570.000281
ORF1ab/nsp31693K1693NaaGaaT11B.1.177.60.000977
ORF1ab/nsp31693K1693delAAG---11B.1.177.60.000977
ORF1ab/nsp31693K1693NaaGaaT11B.1.177.620.001192
ORF1ab/nsp31693K1693NaaGaaT11B.1.177.70.000165
ORF1ab/nsp31693K1693NaaGaaT11B.1.177.760.002494
ORF1ab/nsp31693K1693delAAG---11B.1.177.830.001481
ORF1ab/nsp31693K1693delAAG---11B.1.1790.003759
ORF1ab/nsp31693K1693EAagGag11B.1.20.000009
ORF1ab/nsp31693K1693NaaGaaT11B.1.2100.002132
ORF1ab/nsp31693K1693TaAgaCg11B.1.2210.000071
ORF1ab/nsp31693K1693KaaGaaA11B.1.2340.000132
ORF1ab/nsp31693K1693NaaGaaT11B.1.2370.004975
ORF1ab/nsp31693K1693NaaGaaT11B.1.2400.000216
ORF1ab/nsp31693K1693NaaGaaT11B.1.2470.014925
ORF1ab/nsp31693K1693MaAgaTg11B.1.2520.006623
ORF1ab/nsp31693K1693RaAgaGg11B.1.2580.000067
ORF1ab/nsp31693K1693delAAG---11B.1.258.100.011364
ORF1ab/nsp31693K1693KaaGaaA11B.1.258.170.000104
ORF1ab/nsp31693K1693NaaGaaT11B.1.2700.005618
ORF1ab/nsp31693K1693EAagGag11B.1.2790.000514
ORF1ab/nsp31693K1693RaAgaGg11B.1.3050.002151
ORF1ab/nsp31693K1693KaaGaaA11B.1.3110.000275
ORF1ab/nsp31693K1693NaaGaaT11B.1.3110.000275
ORF1ab/nsp31693K1693NaaGaaT11B.1.3290.000608
ORF1ab/nsp31693K1693NaaGaaT11B.1.3330.010526
ORF1ab/nsp31693K1693NaaGaaT11B.1.3400.004292
ORF1ab/nsp31693K1693EAagGag11B.1.3510.00003
ORF1ab/nsp31693K1693EAagGag11B.1.360.000146
ORF1ab/nsp31693K1693delAAG---11B.1.360.000146
ORF1ab/nsp31693K1693QAagCag11B.1.36.210.00216
ORF1ab/nsp31693K1693NaaGaaT11B.1.3620.001541
ORF1ab/nsp31693K1693RaAgaGg11B.1.3690.000285
ORF1ab/nsp31693K1693NaaGaaT11B.1.3750.00082
ORF1ab/nsp31693K1693NaaGaaT11B.1.3960.000706
ORF1ab/nsp31693K1693QAagCag11B.1.3970.004854
ORF1ab/nsp31693K1693QAagCag11B.1.4000.000429
ORF1ab/nsp31693K1693delAAG---11B.1.4090.000781
ORF1ab/nsp31693K1693NaaGaaT11B.1.4090.000781
ORF1ab/nsp31693K1693NaaGaaT11B.1.4160.001269
ORF1ab/nsp31693K1693delAAG---11B.1.416.10.001563
ORF1ab/nsp31693K1693KaaGaaA11B.1.4270.00005
ORF1ab/nsp31693K1693RaAgaGg11B.1.4280.00102
ORF1ab/nsp31693K1693KaaGaaA11B.1.438.10.000107
ORF1ab/nsp31693K1693RaAgaGg11B.1.438.10.000107
ORF1ab/nsp31693K1693NaaGaaT11B.1.4460.02
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ORF1ab/nsp31693K1693NaaGaaT11B.1.4990.00105
ORF1ab/nsp31693K1693NaaGaaT11B.1.5350.028571
ORF1ab/nsp31693K1693NaaGaaT11B.1.5380.008065
ORF1ab/nsp31693K1693NaaGaaT11B.1.5460.003704
ORF1ab/nsp31693K1693delAAG---11B.1.5610.000397
ORF1ab/nsp31693K1693NaaGaaC11B.1.5730.006098
ORF1ab/nsp31693K1693NaaGaaT11B.1.596.10.009346
ORF1ab/nsp31693K1693NaaGaaT11B.1.5990.00365
ORF1ab/nsp31693K1693QAagCag11B.1.6090.000479
ORF1ab/nsp31693K1693EAagGag11B.1.6090.000479
ORF1ab/nsp31693K1693QAagCag11B.1.617.20.000004
ORF1ab/nsp31693K1693NaaGaaT11B.1.617.30.002985
ORF1ab/nsp31693K1693TaAgaCg11B.1.6210.000089
ORF1ab/nsp31693K1693NaaGaaT11B.1.6270.00202
ORF1ab/nsp31693K1693RaAgaGg11B.1.6280.000352
ORF1ab/nsp31693K1693RaAgaGg11B.1.780.008547
ORF1ab/nsp31693K1693NaaGaaT11B.1.780.008547
ORF1ab/nsp31693K1693NaaGaaT11B.260.014706
ORF1ab/nsp31693K1693delAAG---11B.4.40.018868
ORF1ab/nsp31693K1693NaaGaaT11B.610.005747
ORF1ab/nsp31693K1693NaaGaaT11C.1.20.004255
ORF1ab/nsp31693K1693RaAgaGg11P.10.000016
ORF1ab/nsp31693K1693delAAG---11P.10.000016
ORF1ab/nsp31693K1693NaaGaaT11P.1.120.000484
ORF1ab/nsp31693K1693TaAgaCg11P.1.140.000048
ORF1ab/nsp31693K1693NaaGaaC11P.1.70.000319
ORF1ab/nsp31693K1693delAAG---11Q.20.000613
ORF1ab/nsp31693K1693NaaGaaT11Q.80.000165
ORF1ab/nsp31693K1693NaaGaaT11Z.10.00289