CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 169

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3169T169IT987InonsynaCtaTt1113111313224-3226
ORF1ab/nsp3169T169TT987TsynacTacC6956620.9525183224-3226
ORF1ab/nsp3169T169TT987TsynacTacA695230.03309353224-3226
ORF1ab/nsp3169T169TT987TsynacTacG695100.01438853224-3226
ORF1ab/nsp3169T169AT987AnonsynActGct11211213224-3226
ORF1ab/nsp3169T169delT987deldelACT---898913224-3226
ORF1ab/nsp3169T169NT987NnonsynaCtaAt87860.9885063224-3226
ORF1ab/nsp3169T169NT987NnonsynaCTaAC8710.01149433224-3226
ORF1ab/nsp3169T169PT987PnonsynActCct26250.9615383224-3226
ORF1ab/nsp3169T169PT987PnonsynAcTCcG2610.03846153224-3226
ORF1ab/nsp3169T169ST987SnonsynaCtaGt17140.8235293224-3226
ORF1ab/nsp3169T169ST987SnonsynActTct1730.1764713224-3226
ORF1ab/nsp3169T169LT987LnonsynACTCTG210.53224-3226
ORF1ab/nsp3169T169LT987LnonsynACtCTt210.53224-3226
ORF1ab/nsp3169T169del1T987del1delacTac-1113224-3226
ORF1ab/nsp3169T169MT987MnonsynaCTaTG1113224-3226
ORF1ab/nsp3169T169VT987VnonsynACTGTG1113224-3226
ORF1ab/nsp3169T169del2T987del2delACT--C1113224-3226

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3169T169IaCtaTt11131113All0.000213
ORF1ab/nsp3169T169TacTacC662695All0.000127
ORF1ab/nsp3169T169TacTacA23695All0.000004
ORF1ab/nsp3169T169TacTacG10695All0.000002
ORF1ab/nsp3169T169IaCtaTt407407AY.130.065518
ORF1ab/nsp3169T169TacTacC251251AY.46.40.04129
ORF1ab/nsp3169T169TacTacC163163AY.1020.004322
ORF1ab/nsp3169T169IaCtaTt124124B.1.1.70.000111
ORF1ab/nsp3169T169AActGct112112All0.000021
ORF1ab/nsp3169T169delACT---8989All0.000017
ORF1ab/nsp3169T169NaCtaAt8687All0.000016
ORF1ab/nsp3169T169NaCTaAC187All0
ORF1ab/nsp3169T169TacTacC8083AY.40.000125
ORF1ab/nsp3169T169TacTacA383AY.40.000005
ORF1ab/nsp3169T169TacTacC5660B.1.617.20.000211
ORF1ab/nsp3169T169TacTacA460B.1.617.20.000015
ORF1ab/nsp3169T169IaCtaTt5454AY.460.00562
ORF1ab/nsp3169T169IaCtaTt5454AY.99.20.004976
ORF1ab/nsp3169T169IaCtaTt5151AY.30.000507
ORF1ab/nsp3169T169IaCtaTt5050B.1.400.10.757576
ORF1ab/nsp3169T169TacTacC3536AY.1030.000217
ORF1ab/nsp3169T169TacTacA136AY.1030.000006
ORF1ab/nsp3169T169IaCtaTt3232AY.40.00005
ORF1ab/nsp3169T169IaCtaTt2929B.1.617.20.000109
ORF1ab/nsp3169T169PActCct2526All0.000005
ORF1ab/nsp3169T169PAcTCcG126All0
ORF1ab/nsp3169T169NaCtaAt2526B.1.617.20.000094
ORF1ab/nsp3169T169NaCTaAC126B.1.617.20.000004
ORF1ab/nsp3169T169IaCtaTt2525AY.290.000394
ORF1ab/nsp3169T169AActGct2525C.370.002902
ORF1ab/nsp3169T169AActGct2323B.1.1.70.000021
ORF1ab/nsp3169T169NaCtaAt2121AY.340.002036
ORF1ab/nsp3169T169AActGct2020AY.250.00012
ORF1ab/nsp3169T169IaCtaTt2020Q.10.002527
ORF1ab/nsp3169T169IaCtaTt1818AY.440.00011
ORF1ab/nsp3169T169SaCtaGt1417All0.000003
ORF1ab/nsp3169T169SActTct317All0.000001
ORF1ab/nsp3169T169TacTacC914B.1.1.70.000008
ORF1ab/nsp3169T169TacTacA414B.1.1.70.000004
ORF1ab/nsp3169T169TacTacG114B.1.1.70.000001
ORF1ab/nsp3169T169IaCtaTt1414B.1.5260.000329
ORF1ab/nsp3169T169SaCtaGt1111AY.1030.000068
ORF1ab/nsp3169T169delACT---1111B.1.1.70.00001
ORF1ab/nsp3169T169IaCtaTt1111B.1.3510.000327
ORF1ab/nsp3169T169IaCtaTt1111B.1.6210.000974
ORF1ab/nsp3169T169delACT---1111U.20.096491
ORF1ab/nsp3169T169IaCtaTt1010AY.250.00006
ORF1ab/nsp3169T169IaCtaTt1010AY.260.000283
ORF1ab/nsp3169T169AActGct1010AY.430.000044
ORF1ab/nsp3169T169TacTacC1010AY.440.000061
ORF1ab/nsp3169T169IaCtaTt1010B.1.1770.000132
ORF1ab/nsp3169T169IaCtaTt1010B.1.20.000088
ORF1ab/nsp3169T169IaCtaTt99AY.9.20.000331
ORF1ab/nsp3169T169PActCct99AY.99.20.000829
ORF1ab/nsp3169T169IaCtaTt99B.10.000082
ORF1ab/nsp3169T169IaCtaTt99B.1.4290.000212
ORF1ab/nsp3169T169IaCtaTt88B.1.1.1890.012103
ORF1ab/nsp3169T169IaCtaTt88B.1.2210.000568
ORF1ab/nsp3169T169NaCtaAt77B.10.000064
ORF1ab/nsp3169T169IaCtaTt77B.1.1600.000218
ORF1ab/nsp3169T169TacTacC36B.10.000027
ORF1ab/nsp3169T169TacTacA26B.10.000018
ORF1ab/nsp3169T169TacTacG16B.10.000009
ORF1ab/nsp3169T169IaCtaTt66B.1.10.000109
ORF1ab/nsp3169T169NaCtaAt66B.1.1.70.000005
ORF1ab/nsp3169T169TacTacC66B.1.5260.000141
ORF1ab/nsp3169T169delACT---55AY.1000.00023
ORF1ab/nsp3169T169IaCtaTt55AY.1060.001674
ORF1ab/nsp3169T169IaCtaTt55AY.1160.001434
ORF1ab/nsp3169T169TacTacC55AY.1200.000186
ORF1ab/nsp3169T169TacTacC55AY.390.000124
ORF1ab/nsp3169T169IaCtaTt55AY.430.000022
ORF1ab/nsp3169T169TacTacC55AY.460.00052
ORF1ab/nsp3169T169NaCtaAt55AY.750.00028
ORF1ab/nsp3169T169delACT---55B.10.000046
ORF1ab/nsp3169T169IaCtaTt44AY.1000.000184
ORF1ab/nsp3169T169NaCtaAt44AY.1020.000106
ORF1ab/nsp3169T169IaCtaTt44AY.1030.000025
ORF1ab/nsp3169T169IaCtaTt44AY.200.000155
ORF1ab/nsp3169T169delACT---44AY.40.000006
ORF1ab/nsp3169T169delACT---44AY.440.000024
ORF1ab/nsp3169T169IaCtaTt44B.1.2430.000278
ORF1ab/nsp3169T169AActGct44B.1.5950.001044
ORF1ab/nsp3169T169IaCtaTt44P.10.000063
ORF1ab/nsp3169T169delACT---33AY.1020.00008
ORF1ab/nsp3169T169PActCct33AY.1020.00008
ORF1ab/nsp3169T169AActGct33AY.1030.000019
ORF1ab/nsp3169T169IaCtaTt33AY.1110.000549
ORF1ab/nsp3169T169IaCtaTt33AY.390.000074
ORF1ab/nsp3169T169NaCtaAt33AY.40.000005
ORF1ab/nsp3169T169TacTacC33AY.430.000013
ORF1ab/nsp3169T169IaCtaTt33AY.610.000314
ORF1ab/nsp3169T169IaCtaTt33AY.620.001307
ORF1ab/nsp3169T169IaCtaTt33B.1.1.2650.009464
ORF1ab/nsp3169T169IaCtaTt33B.1.1.3110.001074
ORF1ab/nsp3169T169delACT---33B.1.1.330.001263
ORF1ab/nsp3169T169PActCct33B.1.617.20.000011
ORF1ab/nsp3169T169delACT---33B.580.030612
ORF1ab/nsp3169T169IaCtaTt33C.370.000348
ORF1ab/nsp3169T169AActGct33P.10.000047
ORF1ab/nsp3169T169LACtCTt12All0
ORF1ab/nsp3169T169LACTCTG12All0
ORF1ab/nsp3169T169NaCtaAt22AY.1000.000092
ORF1ab/nsp3169T169delACT---22AY.1030.000012
ORF1ab/nsp3169T169NaCtaAt22AY.1030.000012
ORF1ab/nsp3169T169IaCtaTt22AY.1170.000169
ORF1ab/nsp3169T169delACT---22AY.120.000632
ORF1ab/nsp3169T169delACT---22AY.200.000078
ORF1ab/nsp3169T169IaCtaTt22AY.230.000139
ORF1ab/nsp3169T169NaCtaAt22AY.260.000057
ORF1ab/nsp3169T169TacTacC22AY.260.000057
ORF1ab/nsp3169T169AActGct22AY.290.000032
ORF1ab/nsp3169T169TacTacC22AY.30.00002
ORF1ab/nsp3169T169SaCtaGt22AY.40.000003
ORF1ab/nsp3169T169AActGct22AY.4.20.000043
ORF1ab/nsp3169T169IaCtaTt22AY.46.50.000397
ORF1ab/nsp3169T169TacTacA22AY.60.000082
ORF1ab/nsp3169T169IaCtaTt22AY.690.000373
ORF1ab/nsp3169T169TacTacC22AY.700.000417
ORF1ab/nsp3169T169IaCtaTt22AY.700.000417
ORF1ab/nsp3169T169delACT---22AY.710.00095
ORF1ab/nsp3169T169delACT---22AY.75.10.000361
ORF1ab/nsp3169T169IaCtaTt22AY.920.000575
ORF1ab/nsp3169T169TacTacC22AY.980.000158
ORF1ab/nsp3169T169TacTacC22B.1.10.000036
ORF1ab/nsp3169T169IaCtaTt22B.1.1.250.001137
ORF1ab/nsp3169T169delACT---22B.1.1.3480.001592
ORF1ab/nsp3169T169AActGct22B.1.1.5190.000079
ORF1ab/nsp3169T169TacTacA12B.1.1770.000013
ORF1ab/nsp3169T169TacTacC12B.1.1770.000013
ORF1ab/nsp3169T169IaCtaTt22B.1.177.210.000153
ORF1ab/nsp3169T169NaCtaAt22B.1.20.000018
ORF1ab/nsp3169T169IaCtaTt22B.1.2410.001623
ORF1ab/nsp3169T169delACT---22B.1.3370.011173
ORF1ab/nsp3169T169TacTacC12B.1.3510.00003
ORF1ab/nsp3169T169TacTacA12B.1.3510.00003
ORF1ab/nsp3169T169IaCtaTt22B.1.360.000292
ORF1ab/nsp3169T169IaCtaTt22B.1.4000.000858
ORF1ab/nsp3169T169TacTacG22B.1.5750.000607
ORF1ab/nsp3169T169AActGct22B.1.617.20.000008
ORF1ab/nsp3169T169LACTCTG12B.290.003509
ORF1ab/nsp3169T169PAcTCcG12B.290.003509
ORF1ab/nsp3169T169PActCct12B.290.003509
ORF1ab/nsp3169T169LACtCTt12B.290.003509
ORF1ab/nsp3169T169delACT---22N.60.014184
ORF1ab/nsp3169T169TacTacC22P.10.000032
ORF1ab/nsp3169T169IaCtaTt11A.50.001923
ORF1ab/nsp3169T169IaCtaTt11AD.20.000219
ORF1ab/nsp3169T169VACTGTG11All0
ORF1ab/nsp3169T169del1acTac-11All0
ORF1ab/nsp3169T169MaCTaTG11All0
ORF1ab/nsp3169T169del2ACT--C11All0
ORF1ab/nsp3169T169IaCtaTt11AP.10.001502
ORF1ab/nsp3169T169AActGct11AY.10.000396
ORF1ab/nsp3169T169NaCtaAt11AY.1060.000335
ORF1ab/nsp3169T169IaCtaTt11AY.1080.001103
ORF1ab/nsp3169T169delACT---11AY.1080.001103
ORF1ab/nsp3169T169TacTacC11AY.1100.000113
ORF1ab/nsp3169T169NaCtaAt11AY.1100.000113
ORF1ab/nsp3169T169TacTacC11AY.1130.000142
ORF1ab/nsp3169T169TacTacC11AY.1140.000231
ORF1ab/nsp3169T169TacTacC11AY.1170.000085
ORF1ab/nsp3169T169delACT---11AY.1180.000063
ORF1ab/nsp3169T169AActGct11AY.1180.000063
ORF1ab/nsp3169T169delACT---11AY.1200.000037
ORF1ab/nsp3169T169IaCtaTt11AY.1200.000037
ORF1ab/nsp3169T169TacTacC11AY.130.000161
ORF1ab/nsp3169T169IaCtaTt11AY.140.000088
ORF1ab/nsp3169T169TacTacC11AY.200.000039
ORF1ab/nsp3169T169NaCtaAt11AY.250.000006
ORF1ab/nsp3169T169TacTacG11AY.290.000016
ORF1ab/nsp3169T169NaCtaAt11AY.30.00001
ORF1ab/nsp3169T169PActCct11AY.30.00001
ORF1ab/nsp3169T169IaCtaTt11AY.34.10.00051
ORF1ab/nsp3169T169IaCtaTt11AY.350.000233
ORF1ab/nsp3169T169IaCtaTt11AY.360.000148
ORF1ab/nsp3169T169IaCtaTt11AY.39.10.00004
ORF1ab/nsp3169T169AActGct11AY.40.000002
ORF1ab/nsp3169T169delACT---11AY.4.20.000022
ORF1ab/nsp3169T169TacTacC11AY.4.20.000022
ORF1ab/nsp3169T169IaCtaTt11AY.4.50.000107
ORF1ab/nsp3169T169AActGct11AY.420.00004
ORF1ab/nsp3169T169PActCct11AY.430.000004
ORF1ab/nsp3169T169delACT---11AY.460.000104
ORF1ab/nsp3169T169AActGct11AY.46.40.000165
ORF1ab/nsp3169T169IaCtaTt11AY.46.60.000072
ORF1ab/nsp3169T169TacTacC11AY.470.000031
ORF1ab/nsp3169T169delACT---11AY.50.000021
ORF1ab/nsp3169T169TacTacC11AY.550.000917
ORF1ab/nsp3169T169NaCtaAt11AY.560.001605
ORF1ab/nsp3169T169AActGct11AY.60.000041
ORF1ab/nsp3169T169delACT---11AY.610.000105
ORF1ab/nsp3169T169AActGct11AY.610.000105
ORF1ab/nsp3169T169IaCtaTt11AY.630.000387
ORF1ab/nsp3169T169IaCtaTt11AY.650.000533
ORF1ab/nsp3169T169TacTacA11AY.680.000274
ORF1ab/nsp3169T169IaCtaTt11AY.7.10.000113
ORF1ab/nsp3169T169IaCtaTt11AY.720.001361
ORF1ab/nsp3169T169AActGct11AY.730.000665
ORF1ab/nsp3169T169IaCtaTt11AY.750.000056
ORF1ab/nsp3169T169TacTacC11AY.840.000437
ORF1ab/nsp3169T169delACT---11AY.90.000068
ORF1ab/nsp3169T169TacTacA11AY.9.10.000084
ORF1ab/nsp3169T169IaCtaTt11AY.900.000684
ORF1ab/nsp3169T169delACT---11AY.980.000079
ORF1ab/nsp3169T169TacTacC11AY.99.20.000092
ORF1ab/nsp3169T169del2ACT--C11B0.000128
ORF1ab/nsp3169T169delACT---11B.1.10.000018
ORF1ab/nsp3169T169AActGct11B.1.10.000018
ORF1ab/nsp3169T169PActCct11B.1.1.100.001115
ORF1ab/nsp3169T169TacTacC11B.1.1.1010.01
ORF1ab/nsp3169T169AActGct11B.1.1.2160.00089
ORF1ab/nsp3169T169IaCtaTt11B.1.1.280.000311
ORF1ab/nsp3169T169delACT---11B.1.1.2840.000107
ORF1ab/nsp3169T169AActGct11B.1.1.3060.000438
ORF1ab/nsp3169T169IaCtaTt11B.1.1.3170.000412
ORF1ab/nsp3169T169TacTacG11B.1.1.3910.008547
ORF1ab/nsp3169T169IaCtaTt11B.1.1.4340.000349
ORF1ab/nsp3169T169PActCct11B.1.1.460.004367
ORF1ab/nsp3169T169NaCtaAt11B.1.1.5190.00004
ORF1ab/nsp3169T169VACTGTG11B.1.1.70.000001
ORF1ab/nsp3169T169PActCct11B.1.1.70.000001
ORF1ab/nsp3169T169IaCtaTt11B.1.1110.001175
ORF1ab/nsp3169T169TacTacA11B.1.1110.001175
ORF1ab/nsp3169T169AActGct11B.1.1260.001276
ORF1ab/nsp3169T169AActGct11B.1.1390.000733
ORF1ab/nsp3169T169SActTct11B.1.1600.000031
ORF1ab/nsp3169T169TacTacA11B.1.1600.000031
ORF1ab/nsp3169T169NaCtaAt11B.1.1770.000013
ORF1ab/nsp3169T169IaCtaTt11B.1.177.190.001431
ORF1ab/nsp3169T169delACT---11B.1.177.210.000076
ORF1ab/nsp3169T169TacTacG11B.1.177.420.000894
ORF1ab/nsp3169T169TacTacC11B.1.177.450.000381
ORF1ab/nsp3169T169SaCtaGt11B.1.177.500.004695
ORF1ab/nsp3169T169IaCtaTt11B.1.177.60.000977
ORF1ab/nsp3169T169delACT---11B.1.177.80.000752
ORF1ab/nsp3169T169IaCtaTt11B.1.177.810.000189
ORF1ab/nsp3169T169delACT---11B.1.177.830.001481
ORF1ab/nsp3169T169delACT---11B.1.177.860.000183
ORF1ab/nsp3169T169IaCtaTt11B.1.177.870.000728
ORF1ab/nsp3169T169IaCtaTt11B.1.1920.009259
ORF1ab/nsp3169T169TacTacC11B.1.20.000009
ORF1ab/nsp3169T169delACT---11B.1.2100.002132
ORF1ab/nsp3169T169SActTct11B.1.2210.000071
ORF1ab/nsp3169T169TacTacG11B.1.2220.001692
ORF1ab/nsp3169T169TacTacC11B.1.2400.000216
ORF1ab/nsp3169T169AActGct11B.1.2580.000067
ORF1ab/nsp3169T169del1acTac-11B.1.2580.000067
ORF1ab/nsp3169T169IaCtaTt11B.1.2580.000067
ORF1ab/nsp3169T169IaCtaTt11B.1.3110.000275
ORF1ab/nsp3169T169TacTacC11B.1.3320.003497
ORF1ab/nsp3169T169AActGct11B.1.3500.002933
ORF1ab/nsp3169T169delACT---11B.1.3510.00003
ORF1ab/nsp3169T169PActCct11B.1.351.30.000876
ORF1ab/nsp3169T169IaCtaTt11B.1.36.290.000517
ORF1ab/nsp3169T169IaCtaTt11B.1.4270.00005
ORF1ab/nsp3169T169delACT---11B.1.4290.000024
ORF1ab/nsp3169T169IaCtaTt11B.1.4510.008197
ORF1ab/nsp3169T169IaCtaTt11B.1.4560.003268
ORF1ab/nsp3169T169PActCct11B.1.466.20.000391
ORF1ab/nsp3169T169TacTacG11B.1.5610.000397
ORF1ab/nsp3169T169IaCtaTt11B.1.575.10.002439
ORF1ab/nsp3169T169IaCtaTt11B.1.5800.004065
ORF1ab/nsp3169T169IaCtaTt11B.1.5820.000491
ORF1ab/nsp3169T169PActCct11B.1.6050.005952
ORF1ab/nsp3169T169delACT---11B.1.617.20.000004
ORF1ab/nsp3169T169delACT---11B.1.6210.000089
ORF1ab/nsp3169T169IaCtaTt11B.290.003509
ORF1ab/nsp3169T169TacTacG11B.290.003509
ORF1ab/nsp3169T169MaCTaTG11B.290.003509
ORF1ab/nsp3169T169delACT---11B.340.013699
ORF1ab/nsp3169T169delACT---11C.170.055556
ORF1ab/nsp3169T169PActCct11D.20.000075
ORF1ab/nsp3169T169SActTct11D.20.000075
ORF1ab/nsp3169T169AActGct11N.40.004255
ORF1ab/nsp3169T169TacTacC11N.80.03125
ORF1ab/nsp3169T169IaCtaTt11P.1.140.000048
ORF1ab/nsp3169T169IaCtaTt11Q.40.000455
ORF1ab/nsp3169T169delACT---11Q.80.000165
ORF1ab/nsp3169T169TacTacA11Q.80.000165
ORF1ab/nsp3169T169delACT---11R.10.00009