CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 169 | T169I | T987I | nonsyn | aCt | aTt | 1113 | 1113 | 1 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169T | T987T | syn | acT | acC | 695 | 662 | 0.952518 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169T | T987T | syn | acT | acA | 695 | 23 | 0.0330935 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169T | T987T | syn | acT | acG | 695 | 10 | 0.0143885 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169A | T987A | nonsyn | Act | Gct | 112 | 112 | 1 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169del | T987del | del | ACT | --- | 89 | 89 | 1 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169N | T987N | nonsyn | aCt | aAt | 87 | 86 | 0.988506 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169N | T987N | nonsyn | aCT | aAC | 87 | 1 | 0.0114943 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169P | T987P | nonsyn | Act | Cct | 26 | 25 | 0.961538 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169P | T987P | nonsyn | AcT | CcG | 26 | 1 | 0.0384615 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169S | T987S | nonsyn | aCt | aGt | 17 | 14 | 0.823529 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169S | T987S | nonsyn | Act | Tct | 17 | 3 | 0.176471 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169L | T987L | nonsyn | ACT | CTG | 2 | 1 | 0.5 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169L | T987L | nonsyn | ACt | CTt | 2 | 1 | 0.5 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169del1 | T987del1 | del | acT | ac- | 1 | 1 | 1 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169M | T987M | nonsyn | aCT | aTG | 1 | 1 | 1 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169V | T987V | nonsyn | ACT | GTG | 1 | 1 | 1 | 3224-3226 |
ORF1ab/nsp3 | 169 | T169del2 | T987del2 | del | ACT | --C | 1 | 1 | 1 | 3224-3226 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1113 | 1113 | All | 0.000213 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 662 | 695 | All | 0.000127 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 23 | 695 | All | 0.000004 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 10 | 695 | All | 0.000002 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 407 | 407 | AY.13 | 0.065518 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 251 | 251 | AY.46.4 | 0.04129 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 163 | 163 | AY.102 | 0.004322 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 124 | 124 | B.1.1.7 | 0.000111 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 112 | 112 | All | 0.000021 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 89 | 89 | All | 0.000017 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 86 | 87 | All | 0.000016 |
ORF1ab/nsp3 | 169 | T169N | aCT | aAC | 1 | 87 | All | 0 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 80 | 83 | AY.4 | 0.000125 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 3 | 83 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 56 | 60 | B.1.617.2 | 0.000211 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 4 | 60 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 54 | 54 | AY.46 | 0.00562 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 54 | 54 | AY.99.2 | 0.004976 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 51 | 51 | AY.3 | 0.000507 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 50 | 50 | B.1.400.1 | 0.757576 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 35 | 36 | AY.103 | 0.000217 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 36 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 32 | 32 | AY.4 | 0.00005 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 25 | 26 | All | 0.000005 |
ORF1ab/nsp3 | 169 | T169P | AcT | CcG | 1 | 26 | All | 0 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 25 | 26 | B.1.617.2 | 0.000094 |
ORF1ab/nsp3 | 169 | T169N | aCT | aAC | 1 | 26 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 25 | 25 | AY.29 | 0.000394 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 21 | 21 | AY.34 | 0.002036 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 20 | 20 | AY.25 | 0.00012 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 20 | 20 | Q.1 | 0.002527 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 169 | T169S | aCt | aGt | 14 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 169 | T169S | Act | Tct | 3 | 17 | All | 0.000001 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 9 | 14 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 4 | 14 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 14 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 14 | 14 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 169 | T169S | aCt | aGt | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 11 | 11 | U.2 | 0.096491 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 9 | 9 | AY.9.2 | 0.000331 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 8 | 8 | B.1.1.189 | 0.012103 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 3 | 6 | B.1 | 0.000027 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 3 | 3 | B.58 | 0.030612 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 169 | T169L | ACt | CTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 169 | T169L | ACT | CTG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 169 | T169S | aCt | aGt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | B.1.337 | 0.011173 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 169 | T169L | ACT | CTG | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169P | AcT | CcG | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169L | ACt | CTt | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 169 | T169V | ACT | GTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 169 | T169del1 | acT | ac- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 169 | T169M | aCT | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 169 | T169del2 | ACT | --C | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 169 | T169del2 | ACT | --C | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 169 | T169V | ACT | GTG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 169 | T169S | Act | Tct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 169 | T169N | aCt | aAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 169 | T169S | aCt | aGt | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 169 | T169S | Act | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 169 | T169del1 | acT | ac- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169T | acT | acG | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169M | aCT | aTG | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 169 | T169P | Act | Cct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 169 | T169S | Act | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 169 | T169A | Act | Gct | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 169 | T169T | acT | acC | 1 | 1 | N.8 | 0.03125 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 169 | T169I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 169 | T169T | acT | acA | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 169 | T169del | ACT | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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