CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1688 | D1688D | D2506D | syn | gaT | gaC | 854 | 854 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688G | D2506G | nonsyn | gAt | gGt | 379 | 379 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688A | D2506A | nonsyn | gAt | gCt | 129 | 129 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688del | D2506del | del | GAT | --- | 122 | 122 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688N | D2506N | nonsyn | Gat | Aat | 70 | 68 | 0.971429 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688N | D2506N | nonsyn | GaT | AaC | 70 | 2 | 0.0285714 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688Y | D2506Y | nonsyn | Gat | Tat | 32 | 30 | 0.9375 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688Y | D2506Y | nonsyn | GaT | TaC | 32 | 2 | 0.0625 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688V | D2506V | nonsyn | gAt | gTt | 22 | 22 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688E | D2506E | nonsyn | gaT | gaA | 19 | 13 | 0.684211 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688E | D2506E | nonsyn | gaT | gaG | 19 | 6 | 0.315789 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688S | D2506S | nonsyn | GAT | AGC | 6 | 5 | 0.833333 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688S | D2506S | nonsyn | GAt | AGt | 6 | 1 | 0.166667 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688del1 | D2506del1 | del | gaT | ga- | 2 | 2 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688I | D2506I | nonsyn | GAT | ATC | 2 | 1 | 0.5 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688I | D2506I | nonsyn | GAt | ATt | 2 | 1 | 0.5 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688del2 | D2506del2 | del | GAt | --t | 1 | 1 | 1 | 7781-7783 |
ORF1ab/nsp3 | 1688 | D1688H | D2506H | nonsyn | Gat | Cat | 1 | 1 | 1 | 7781-7783 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 854 | 854 | All | 0.000163 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 410 | 410 | B.1.1.198 | 0.602056 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 379 | 379 | All | 0.000072 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 129 | 129 | All | 0.000025 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 122 | 122 | All | 0.000023 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 117 | 117 | AY.6 | 0.004812 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 109 | 109 | B.1.1.7 | 0.000098 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 100 | 100 | B.1.1.7 | 0.00009 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 77 | 77 | B.1.1.7 | 0.000069 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 68 | 70 | All | 0.000013 |
ORF1ab/nsp3 | 1688 | D1688N | GaT | AaC | 2 | 70 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 70 | 70 | B.1.617.2 | 0.000264 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 49 | 49 | AY.4 | 0.000076 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 42 | 42 | AY.44 | 0.000256 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 30 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 1688 | D1688Y | GaT | TaC | 2 | 32 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 27 | 27 | B.1.2 | 0.000238 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 21 | 21 | AY.121 | 0.002842 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 13 | 19 | All | 0.000002 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaG | 6 | 19 | All | 0.000001 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 15 | 15 | Q.7 | 0.016667 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 7 | 7 | A.23.1 | 0.00493 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1688 | D1688S | GAT | AGC | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1688 | D1688S | GAt | AGt | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1688 | D1688N | GaT | AaC | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaG | 3 | 5 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 2 | 5 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1688 | D1688S | GAT | AGC | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 2 | 3 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1688 | D1688N | GaT | AaC | 1 | 3 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 3 | 3 | B.1.36.37 | 0.008333 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp3 | 1688 | D1688Y | GaT | TaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp3 | 1688 | D1688del1 | gaT | ga- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688I | GAt | ATt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688I | GAT | ATC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1688 | D1688del2 | GAt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688H | Gat | Cat | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1688 | D1688del1 | gaT | ga- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1688 | D1688del1 | gaT | ga- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1688 | D1688I | GAt | ATt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1688 | D1688S | GAt | AGt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688S | GAT | AGC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.1.137 | 0.0125 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1688 | D1688del2 | GAt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaA | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1688 | D1688H | Gat | Cat | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1688 | D1688E | gaT | gaG | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp3 | 1688 | D1688I | GAT | ATC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1688 | D1688A | gAt | gCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1688 | D1688V | gAt | gTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1688 | D1688N | Gat | Aat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1688 | D1688Y | Gat | Tat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1688 | D1688D | gaT | gaC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1688 | D1688del | GAT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1688 | D1688G | gAt | gGt | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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