CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1688

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31688D1688DD2506DsyngaTgaC85485417781-7783
ORF1ab/nsp31688D1688GD2506GnonsyngAtgGt37937917781-7783
ORF1ab/nsp31688D1688AD2506AnonsyngAtgCt12912917781-7783
ORF1ab/nsp31688D1688delD2506deldelGAT---12212217781-7783
ORF1ab/nsp31688D1688ND2506NnonsynGatAat70680.9714297781-7783
ORF1ab/nsp31688D1688ND2506NnonsynGaTAaC7020.02857147781-7783
ORF1ab/nsp31688D1688YD2506YnonsynGatTat32300.93757781-7783
ORF1ab/nsp31688D1688YD2506YnonsynGaTTaC3220.06257781-7783
ORF1ab/nsp31688D1688VD2506VnonsyngAtgTt222217781-7783
ORF1ab/nsp31688D1688ED2506EnonsyngaTgaA19130.6842117781-7783
ORF1ab/nsp31688D1688ED2506EnonsyngaTgaG1960.3157897781-7783
ORF1ab/nsp31688D1688SD2506SnonsynGATAGC650.8333337781-7783
ORF1ab/nsp31688D1688SD2506SnonsynGAtAGt610.1666677781-7783
ORF1ab/nsp31688D1688del1D2506del1delgaTga-2217781-7783
ORF1ab/nsp31688D1688ID2506InonsynGATATC210.57781-7783
ORF1ab/nsp31688D1688ID2506InonsynGAtATt210.57781-7783
ORF1ab/nsp31688D1688del2D2506del2delGAt--t1117781-7783
ORF1ab/nsp31688D1688HD2506HnonsynGatCat1117781-7783

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31688D1688DgaTgaC854854All0.000163
ORF1ab/nsp31688D1688DgaTgaC410410B.1.1.1980.602056
ORF1ab/nsp31688D1688GgAtgGt379379All0.000072
ORF1ab/nsp31688D1688AgAtgCt129129All0.000025
ORF1ab/nsp31688D1688delGAT---122122All0.000023
ORF1ab/nsp31688D1688GgAtgGt117117AY.60.004812
ORF1ab/nsp31688D1688DgaTgaC109109B.1.1.70.000098
ORF1ab/nsp31688D1688GgAtgGt100100B.1.1.70.00009
ORF1ab/nsp31688D1688AgAtgCt7777B.1.1.70.000069
ORF1ab/nsp31688D1688NGatAat6870All0.000013
ORF1ab/nsp31688D1688NGaTAaC270All0
ORF1ab/nsp31688D1688DgaTgaC7070B.1.617.20.000264
ORF1ab/nsp31688D1688delGAT---5050B.1.1.70.000045
ORF1ab/nsp31688D1688GgAtgGt4949AY.40.000076
ORF1ab/nsp31688D1688DgaTgaC4242AY.440.000256
ORF1ab/nsp31688D1688YGatTat3032All0.000006
ORF1ab/nsp31688D1688YGaTTaC232All0
ORF1ab/nsp31688D1688NGatAat2828AY.30.000278
ORF1ab/nsp31688D1688DgaTgaC2727AY.40.000042
ORF1ab/nsp31688D1688GgAtgGt2727B.1.20.000238
ORF1ab/nsp31688D1688VgAtgTt2222All0.000004
ORF1ab/nsp31688D1688DgaTgaC2121AY.1210.002842
ORF1ab/nsp31688D1688EgaTgaA1319All0.000002
ORF1ab/nsp31688D1688EgaTgaG619All0.000001
ORF1ab/nsp31688D1688GgAtgGt1717AY.250.000102
ORF1ab/nsp31688D1688DgaTgaC1515AY.1190.00053
ORF1ab/nsp31688D1688DgaTgaC1515Q.70.016667
ORF1ab/nsp31688D1688DgaTgaC1111B.1.5260.000259
ORF1ab/nsp31688D1688AgAtgCt1010AY.290.000158
ORF1ab/nsp31688D1688DgaTgaC99AY.1020.000239
ORF1ab/nsp31688D1688YGatTat99AY.1030.000056
ORF1ab/nsp31688D1688DgaTgaC88AY.250.000048
ORF1ab/nsp31688D1688DgaTgaC88B.1.1770.000105
ORF1ab/nsp31688D1688NGatAat77A.23.10.00493
ORF1ab/nsp31688D1688DgaTgaC77AY.1030.000043
ORF1ab/nsp31688D1688YGatTat77AY.40.000011
ORF1ab/nsp31688D1688DgaTgaC77AY.430.000031
ORF1ab/nsp31688D1688NGatAat77AY.50.000145
ORF1ab/nsp31688D1688DgaTgaC77B.1.20.000062
ORF1ab/nsp31688D1688VgAtgTt77B.1.617.20.000026
ORF1ab/nsp31688D1688delGAT---77B.1.617.20.000026
ORF1ab/nsp31688D1688SGATAGC56All0.000001
ORF1ab/nsp31688D1688SGAtAGt16All0
ORF1ab/nsp31688D1688DgaTgaC66B.10.000055
ORF1ab/nsp31688D1688NGatAat56B.1.617.20.000019
ORF1ab/nsp31688D1688NGaTAaC16B.1.617.20.000004
ORF1ab/nsp31688D1688delGAT---55AY.250.00003
ORF1ab/nsp31688D1688DgaTgaC55AY.390.000124
ORF1ab/nsp31688D1688EgaTgaG35B.1.1.70.000003
ORF1ab/nsp31688D1688EgaTgaA25B.1.1.70.000002
ORF1ab/nsp31688D1688SGATAGC440.222222
ORF1ab/nsp31688D1688DgaTgaC44AY.1000.000184
ORF1ab/nsp31688D1688GgAtgGt44AY.30.00004
ORF1ab/nsp31688D1688DgaTgaC44AY.4.20.000087
ORF1ab/nsp31688D1688AgAtgCt44AY.470.000124
ORF1ab/nsp31688D1688YGatTat44B.10.000037
ORF1ab/nsp31688D1688GgAtgGt44B.1.1770.000053
ORF1ab/nsp31688D1688DgaTgaC44B.1.177.570.001124
ORF1ab/nsp31688D1688DgaTgaC44B.1.177.810.000757
ORF1ab/nsp31688D1688GgAtgGt44B.1.2430.000278
ORF1ab/nsp31688D1688AgAtgCt44B.1.617.20.000015
ORF1ab/nsp31688D1688DgaTgaC44R.10.00036
ORF1ab/nsp31688D1688AgAtgCt33AY.250.000018
ORF1ab/nsp31688D1688delGAT---33AY.40.000005
ORF1ab/nsp31688D1688AgAtgCt33AY.40.000005
ORF1ab/nsp31688D1688EgaTgaA33AY.40.000005
ORF1ab/nsp31688D1688delGAT---33AY.430.000013
ORF1ab/nsp31688D1688GgAtgGt33AY.440.000018
ORF1ab/nsp31688D1688GgAtgGt33AY.610.000314
ORF1ab/nsp31688D1688AgAtgCt33AY.75.10.000541
ORF1ab/nsp31688D1688DgaTgaC33B.1.1.1530.003286
ORF1ab/nsp31688D1688NGatAat33B.1.1.70.000003
ORF1ab/nsp31688D1688DgaTgaC33B.1.2430.000209
ORF1ab/nsp31688D1688NGatAat23B.1.2580.000133
ORF1ab/nsp31688D1688NGaTAaC13B.1.2580.000067
ORF1ab/nsp31688D1688GgAtgGt33B.1.36.370.008333
ORF1ab/nsp31688D1688DgaTgaC33B.1.5610.001191
ORF1ab/nsp31688D1688GgAtgGt33B.1.617.20.000011
ORF1ab/nsp31688D1688EgaTgaA33B.1.617.20.000011
ORF1ab/nsp31688D1688DgaTgaC33C.370.000348
ORF1ab/nsp31688D1688NGatAat33Q.40.001364
ORF1ab/nsp31688D1688YGaTTaC220.111111
ORF1ab/nsp31688D1688AgAtgCt22A.2.40.006734
ORF1ab/nsp31688D1688del1gaTga-22All0
ORF1ab/nsp31688D1688IGAtATt12All0
ORF1ab/nsp31688D1688IGATATC12All0
ORF1ab/nsp31688D1688NGatAat22AY.1000.000092
ORF1ab/nsp31688D1688GgAtgGt22AY.1000.000092
ORF1ab/nsp31688D1688VgAtgTt22AY.1020.000053
ORF1ab/nsp31688D1688GgAtgGt22AY.1030.000012
ORF1ab/nsp31688D1688AgAtgCt22AY.1030.000012
ORF1ab/nsp31688D1688delGAT---22AY.1110.000366
ORF1ab/nsp31688D1688DgaTgaC22AY.16.10.00094
ORF1ab/nsp31688D1688delGAT---22AY.190.002281
ORF1ab/nsp31688D1688NGatAat22AY.250.000012
ORF1ab/nsp31688D1688DgaTgaC22AY.260.000057
ORF1ab/nsp31688D1688AgAtgCt22AY.260.000057
ORF1ab/nsp31688D1688DgaTgaC22AY.270.000129
ORF1ab/nsp31688D1688GgAtgGt22AY.290.000032
ORF1ab/nsp31688D1688DgaTgaC22AY.290.000032
ORF1ab/nsp31688D1688DgaTgaC22AY.30.00002
ORF1ab/nsp31688D1688AgAtgCt22AY.30.00002
ORF1ab/nsp31688D1688GgAtgGt22AY.3.10.000171
ORF1ab/nsp31688D1688delGAT---22AY.330.000134
ORF1ab/nsp31688D1688VgAtgTt22AY.390.000049
ORF1ab/nsp31688D1688GgAtgGt22AY.4.20.000043
ORF1ab/nsp31688D1688VgAtgTt22AY.430.000009
ORF1ab/nsp31688D1688delGAT---22AY.46.20.001271
ORF1ab/nsp31688D1688delGAT---22AY.50.000041
ORF1ab/nsp31688D1688VgAtgTt22AY.550.001835
ORF1ab/nsp31688D1688DgaTgaC22AY.90.000135
ORF1ab/nsp31688D1688delGAT---22B.10.000018
ORF1ab/nsp31688D1688delGAT---22B.1.1.2360.013793
ORF1ab/nsp31688D1688DgaTgaC22B.1.1110.00235
ORF1ab/nsp31688D1688delGAT---22B.1.1770.000026
ORF1ab/nsp31688D1688delGAT---22B.1.177.210.000153
ORF1ab/nsp31688D1688AgAtgCt22B.1.2430.000139
ORF1ab/nsp31688D1688DgaTgaC22B.1.3770.009132
ORF1ab/nsp31688D1688GgAtgGt22B.1.6370.000146
ORF1ab/nsp31688D1688GgAtgGt22P.10.000032
ORF1ab/nsp31688D1688AgAtgCt22P.1.160.000748
ORF1ab/nsp31688D1688GgAtgGt22Q.10.000253
ORF1ab/nsp31688D1688delGAT---11A0.000387
ORF1ab/nsp31688D1688EgaTgaA11A0.000387
ORF1ab/nsp31688D1688GgAtgGt11A.2.40.003367
ORF1ab/nsp31688D1688del2GAt--t11All0
ORF1ab/nsp31688D1688HGatCat11All0
ORF1ab/nsp31688D1688delGAT---11AY.1020.000027
ORF1ab/nsp31688D1688NGatAat11AY.1020.000027
ORF1ab/nsp31688D1688GgAtgGt11AY.1060.000335
ORF1ab/nsp31688D1688AgAtgCt11AY.1080.001103
ORF1ab/nsp31688D1688GgAtgGt11AY.1130.000142
ORF1ab/nsp31688D1688VgAtgTt11AY.1160.000287
ORF1ab/nsp31688D1688GgAtgGt11AY.1190.000035
ORF1ab/nsp31688D1688NGatAat11AY.1190.000035
ORF1ab/nsp31688D1688VgAtgTt11AY.1190.000035
ORF1ab/nsp31688D1688delGAT---11AY.1200.000037
ORF1ab/nsp31688D1688GgAtgGt11AY.1200.000037
ORF1ab/nsp31688D1688YGatTat11AY.1200.000037
ORF1ab/nsp31688D1688DgaTgaC11AY.120.10.000321
ORF1ab/nsp31688D1688GgAtgGt11AY.1210.000135
ORF1ab/nsp31688D1688GgAtgGt11AY.130.000161
ORF1ab/nsp31688D1688GgAtgGt11AY.200.000039
ORF1ab/nsp31688D1688VgAtgTt11AY.230.00007
ORF1ab/nsp31688D1688DgaTgaC11AY.23.10.000417
ORF1ab/nsp31688D1688AgAtgCt11AY.270.000065
ORF1ab/nsp31688D1688del1gaTga-11AY.3.10.000085
ORF1ab/nsp31688D1688EgaTgaA11AY.330.000067
ORF1ab/nsp31688D1688AgAtgCt11AY.380.000499
ORF1ab/nsp31688D1688GgAtgGt11AY.390.000025
ORF1ab/nsp31688D1688AgAtgCt11AY.39.10.00004
ORF1ab/nsp31688D1688NGatAat11AY.40.000002
ORF1ab/nsp31688D1688delGAT---11AY.4.50.000107
ORF1ab/nsp31688D1688delGAT---11AY.420.00004
ORF1ab/nsp31688D1688EgaTgaA11AY.430.000004
ORF1ab/nsp31688D1688GgAtgGt11AY.430.000004
ORF1ab/nsp31688D1688delGAT---11AY.440.000006
ORF1ab/nsp31688D1688NGatAat11AY.440.000006
ORF1ab/nsp31688D1688AgAtgCt11AY.450.000122
ORF1ab/nsp31688D1688GgAtgGt11AY.460.000104
ORF1ab/nsp31688D1688DgaTgaC11AY.460.000104
ORF1ab/nsp31688D1688AgAtgCt11AY.46.60.000072
ORF1ab/nsp31688D1688GgAtgGt11AY.470.000031
ORF1ab/nsp31688D1688VgAtgTt11AY.480.000465
ORF1ab/nsp31688D1688GgAtgGt11AY.50.000021
ORF1ab/nsp31688D1688EgaTgaG11AY.50.000021
ORF1ab/nsp31688D1688delGAT---11AY.5.30.000337
ORF1ab/nsp31688D1688DgaTgaC11AY.5.40.000277
ORF1ab/nsp31688D1688DgaTgaC11AY.520.000814
ORF1ab/nsp31688D1688delGAT---11AY.520.000814
ORF1ab/nsp31688D1688DgaTgaC11AY.540.000095
ORF1ab/nsp31688D1688delGAT---11AY.60.000041
ORF1ab/nsp31688D1688DgaTgaC11AY.60.000041
ORF1ab/nsp31688D1688del1gaTga-11AY.610.000105
ORF1ab/nsp31688D1688DgaTgaC11AY.610.000105
ORF1ab/nsp31688D1688AgAtgCt11AY.610.000105
ORF1ab/nsp31688D1688GgAtgGt11AY.650.000533
ORF1ab/nsp31688D1688EgaTgaG11AY.670.000464
ORF1ab/nsp31688D1688DgaTgaC11AY.740.000116
ORF1ab/nsp31688D1688DgaTgaC11AY.750.000056
ORF1ab/nsp31688D1688DgaTgaC11AY.780.001541
ORF1ab/nsp31688D1688delGAT---11AY.810.001992
ORF1ab/nsp31688D1688delGAT---11AY.840.000437
ORF1ab/nsp31688D1688delGAT---11AY.90.000068
ORF1ab/nsp31688D1688GgAtgGt11AY.9.20.000037
ORF1ab/nsp31688D1688NGatAat11AY.920.000287
ORF1ab/nsp31688D1688GgAtgGt11AY.98.10.000048
ORF1ab/nsp31688D1688IGAtATt11AY.990.001049
ORF1ab/nsp31688D1688SGAtAGt11AY.990.001049
ORF1ab/nsp31688D1688GgAtgGt11B0.000128
ORF1ab/nsp31688D1688AgAtgCt11B.10.000009
ORF1ab/nsp31688D1688GgAtgGt11B.10.000009
ORF1ab/nsp31688D1688GgAtgGt11B.1.10.000018
ORF1ab/nsp31688D1688delGAT---11B.1.10.000018
ORF1ab/nsp31688D1688SGATAGC11B.1.10.000018
ORF1ab/nsp31688D1688DgaTgaC11B.1.10.000018
ORF1ab/nsp31688D1688delGAT---11B.1.1.1370.0125
ORF1ab/nsp31688D1688EgaTgaA11B.1.1.1480.008772
ORF1ab/nsp31688D1688delGAT---11B.1.1.1700.001247
ORF1ab/nsp31688D1688NGatAat11B.1.1.2220.000204
ORF1ab/nsp31688D1688DgaTgaC11B.1.1.3480.000796
ORF1ab/nsp31688D1688delGAT---11B.1.1.4200.001006
ORF1ab/nsp31688D1688DgaTgaC11B.1.1.4480.002033
ORF1ab/nsp31688D1688delGAT---11B.1.1.460.004367
ORF1ab/nsp31688D1688GgAtgGt11B.1.1.4860.001577
ORF1ab/nsp31688D1688DgaTgaC11B.1.1.4870.005587
ORF1ab/nsp31688D1688DgaTgaC11B.1.1.510.001718
ORF1ab/nsp31688D1688AgAtgCt11B.1.1.5190.00004
ORF1ab/nsp31688D1688DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp31688D1688VgAtgTt11B.1.1.70.000001
ORF1ab/nsp31688D1688YGatTat11B.1.1.70.000001
ORF1ab/nsp31688D1688del2GAt--t11B.1.1.70.000001
ORF1ab/nsp31688D1688AgAtgCt11B.1.1600.000031
ORF1ab/nsp31688D1688GgAtgGt11B.1.1600.000031
ORF1ab/nsp31688D1688DgaTgaC11B.1.1600.000031
ORF1ab/nsp31688D1688EgaTgaA11B.1.160.140.002119
ORF1ab/nsp31688D1688YGatTat11B.1.1770.000013
ORF1ab/nsp31688D1688DgaTgaC11B.1.177.100.000878
ORF1ab/nsp31688D1688delGAT---11B.1.177.180.00116
ORF1ab/nsp31688D1688delGAT---11B.1.177.40.000211
ORF1ab/nsp31688D1688delGAT---11B.1.177.570.000281
ORF1ab/nsp31688D1688delGAT---11B.1.177.60.000977
ORF1ab/nsp31688D1688delGAT---11B.1.177.830.001481
ORF1ab/nsp31688D1688delGAT---11B.1.1790.003759
ORF1ab/nsp31688D1688AgAtgCt11B.1.20.000009
ORF1ab/nsp31688D1688YGatTat11B.1.20.000009
ORF1ab/nsp31688D1688VgAtgTt11B.1.2340.000132
ORF1ab/nsp31688D1688GgAtgGt11B.1.2340.000132
ORF1ab/nsp31688D1688GgAtgGt11B.1.2400.000216
ORF1ab/nsp31688D1688delGAT---11B.1.2580.000067
ORF1ab/nsp31688D1688delGAT---11B.1.258.100.011364
ORF1ab/nsp31688D1688YGatTat11B.1.3010.005917
ORF1ab/nsp31688D1688HGatCat11B.1.3400.004292
ORF1ab/nsp31688D1688DgaTgaC11B.1.3510.00003
ORF1ab/nsp31688D1688delGAT---11B.1.360.000146
ORF1ab/nsp31688D1688GgAtgGt11B.1.36.220.001208
ORF1ab/nsp31688D1688delGAT---11B.1.36.290.000517
ORF1ab/nsp31688D1688DgaTgaC11B.1.36.310.001751
ORF1ab/nsp31688D1688GgAtgGt11B.1.3690.000285
ORF1ab/nsp31688D1688YGatTat11B.1.400.10.015152
ORF1ab/nsp31688D1688delGAT---11B.1.4090.000781
ORF1ab/nsp31688D1688delGAT---11B.1.416.10.001563
ORF1ab/nsp31688D1688DgaTgaC11B.1.4270.00005
ORF1ab/nsp31688D1688DgaTgaC11B.1.4290.000024
ORF1ab/nsp31688D1688YGatTat11B.1.4290.000024
ORF1ab/nsp31688D1688EgaTgaG11B.1.4650.003802
ORF1ab/nsp31688D1688NGatAat11B.1.4970.000315
ORF1ab/nsp31688D1688delGAT---11B.1.5010.007353
ORF1ab/nsp31688D1688NGatAat11B.1.5250.000113
ORF1ab/nsp31688D1688DgaTgaC11B.1.5400.009709
ORF1ab/nsp31688D1688delGAT---11B.1.5610.000397
ORF1ab/nsp31688D1688DgaTgaC11B.1.5950.000261
ORF1ab/nsp31688D1688AgAtgCt11B.1.5960.000087
ORF1ab/nsp31688D1688delGAT---11B.1.6060.006024
ORF1ab/nsp31688D1688YGatTat11B.1.617.20.000004
ORF1ab/nsp31688D1688GgAtgGt11B.1.6210.000089
ORF1ab/nsp31688D1688DgaTgaC11B.390.002331
ORF1ab/nsp31688D1688delGAT---11B.4.40.018868
ORF1ab/nsp31688D1688YGatTat11B.60.00091
ORF1ab/nsp31688D1688GgAtgGt11B.600.015873
ORF1ab/nsp31688D1688IGATATC11C.350.000774
ORF1ab/nsp31688D1688AgAtgCt11C.370.000116
ORF1ab/nsp31688D1688GgAtgGt11C.370.000116
ORF1ab/nsp31688D1688VgAtgTt11D.20.000075
ORF1ab/nsp31688D1688NGatAat11P.10.000016
ORF1ab/nsp31688D1688DgaTgaC11P.10.000016
ORF1ab/nsp31688D1688delGAT---11P.10.000016
ORF1ab/nsp31688D1688YGatTat11P.1.10.000318
ORF1ab/nsp31688D1688delGAT---11P.1.10.000318
ORF1ab/nsp31688D1688DgaTgaC11P.1.140.000048
ORF1ab/nsp31688D1688DgaTgaC11P.20.000187
ORF1ab/nsp31688D1688delGAT---11Q.20.000613
ORF1ab/nsp31688D1688GgAtgGt11Q.80.000165