CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1683

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31683I1683TI2501TnonsynaTcaCc33215332100.9998497766-7768
ORF1ab/nsp31683I1683TI2501TnonsynaTCaCT3321550.0001505347766-7768
ORF1ab/nsp31683I1683II2501IsynatCatT22309222740.9984317766-7768
ORF1ab/nsp31683I1683II2501IsynatCatA22309350.001568877766-7768
ORF1ab/nsp31683I1683VI2501VnonsynAtcGtc3743730.9973267766-7768
ORF1ab/nsp31683I1683VI2501VnonsynAtCGtT37410.00267387766-7768
ORF1ab/nsp31683I1683delI2501deldelATC---11211217766-7768
ORF1ab/nsp31683I1683LI2501LnonsynAtcCtc41400.975617766-7768
ORF1ab/nsp31683I1683LI2501LnonsynAtCTtG4110.02439027766-7768
ORF1ab/nsp31683I1683FI2501FnonsynAtcTtc111117766-7768
ORF1ab/nsp31683I1683del2I2501del2delATc--c320.6666677766-7768
ORF1ab/nsp31683I1683SI2501SnonsynaTcaGc320.6666677766-7768
ORF1ab/nsp31683I1683del2I2501del2delATC--N310.3333337766-7768
ORF1ab/nsp31683I1683SI2501SnonsynATcTCc310.3333337766-7768
ORF1ab/nsp31683I1683MI2501MnonsynatCatG2217766-7768
ORF1ab/nsp31683I1683GI2501GnonsynATCGGT1117766-7768
ORF1ab/nsp31683I1683AI2501AnonsynATcGCc1117766-7768
ORF1ab/nsp31683I1683PI2501PnonsynATcCCc1117766-7768

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31683I1683TaTcaCc3321033215All0.006352
ORF1ab/nsp31683I1683TaTCaCT533215All0.000001
ORF1ab/nsp31683I1683IatCatT2227422309All0.00426
ORF1ab/nsp31683I1683IatCatA3522309All0.000007
ORF1ab/nsp31683I1683IatCatT1985019850AY.98.10.961352
ORF1ab/nsp31683I1683TaTcaCc1464714648B.1.2580.974712
ORF1ab/nsp31683I1683TaTCaCT114648B.1.2580.000067
ORF1ab/nsp31683I1683TaTcaCc94279429B.1.258.170.980141
ORF1ab/nsp31683I1683TaTCaCT29429B.1.258.170.000208
ORF1ab/nsp31683I1683TaTcaCc24782478B.1.258.110.982164
ORF1ab/nsp31683I1683TaTcaCc994994B.1.258.140.97451
ORF1ab/nsp31683I1683TaTcaCc610610B.1.258.160.998363
ORF1ab/nsp31683I1683TaTcaCc579579B.1.258.30.969849
ORF1ab/nsp31683I1683IatCatT554554B.1.2410.449675
ORF1ab/nsp31683I1683TaTcaCc506506B.1.258.70.967495
ORF1ab/nsp31683I1683IatCatT380381B.1.1.70.00034
ORF1ab/nsp31683I1683IatCatA1381B.1.1.70.000001
ORF1ab/nsp31683I1683VAtcGtc373374All0.000071
ORF1ab/nsp31683I1683VAtCGtT1374All0
ORF1ab/nsp31683I1683TaTcaCc365365B.1.258.220.973333
ORF1ab/nsp31683I1683TaTcaCc336336B.1.5700.988235
ORF1ab/nsp31683I1683TaTcaCc314314B.10.002876
ORF1ab/nsp31683I1683TaTcaCc282282B.1.258.40.972414
ORF1ab/nsp31683I1683IatCatT247252AY.40.000384
ORF1ab/nsp31683I1683IatCatA5252AY.40.000008
ORF1ab/nsp31683I1683TaTcaCc221221B.1.258.20.995495
ORF1ab/nsp31683I1683IatCatT218218B.1.5050.95614
ORF1ab/nsp31683I1683IatCatT206206AY.430.000913
ORF1ab/nsp31683I1683TaTcaCc200200B.1.258.91
ORF1ab/nsp31683I1683IatCatT183183B.1.6300.958115
ORF1ab/nsp31683I1683TaTcaCc152152AY.240.065517
ORF1ab/nsp31683I1683TaTcaCc141141B.1.258.191
ORF1ab/nsp31683I1683TaTcaCc127127B.1.258.210.984496
ORF1ab/nsp31683I1683TaTcaCc122122B.1.258.120.96063
ORF1ab/nsp31683I1683delATC---112112All0.000021
ORF1ab/nsp31683I1683TaTcaCc105105AY.1030.000652
ORF1ab/nsp31683I1683IatCatT102102AY.1030.000633
ORF1ab/nsp31683I1683TaTcaCc100100B.1.258.50.877193
ORF1ab/nsp31683I1683TaTcaCc9393B.1.258.241
ORF1ab/nsp31683I1683TaTcaCc8787B.1.258.100.988636
ORF1ab/nsp31683I1683VAtcGtc8484B.1.1.70.000075
ORF1ab/nsp31683I1683TaTcaCc7171AY.440.000432
ORF1ab/nsp31683I1683TaTcaCc6969B.1.1.70.000062
ORF1ab/nsp31683I1683TaTcaCc6363B.1.258.201
ORF1ab/nsp31683I1683IatCatT5357B.1.617.20.0002
ORF1ab/nsp31683I1683IatCatA457B.1.617.20.000015
ORF1ab/nsp31683I1683TaTcaCc5353B.1.258.151
ORF1ab/nsp31683I1683IatCatT4851AY.980.003792
ORF1ab/nsp31683I1683IatCatA351AY.980.000237
ORF1ab/nsp31683I1683delATC---5151B.1.1.70.000046
ORF1ab/nsp31683I1683TaTcaCc4949B.1.258.60.960784
ORF1ab/nsp31683I1683TaTcaCc4848B.1.1600.001497
ORF1ab/nsp31683I1683TaTcaCc4848B.1.20.000423
ORF1ab/nsp31683I1683TaTcaCc4747B.1.1.3040.132022
ORF1ab/nsp31683I1683VAtcGtc4545AY.40.00007
ORF1ab/nsp31683I1683TaTcaCc4444AY.250.000265
ORF1ab/nsp31683I1683TaTcaCc4444B.1.1770.000579
ORF1ab/nsp31683I1683TaTcaCc4444B.1.5750.01335
ORF1ab/nsp31683I1683TaTcaCc4343B.1.10.00078
ORF1ab/nsp31683I1683TaTcaCc4242B.1.258.231
ORF1ab/nsp31683I1683LAtcCtc4041All0.000008
ORF1ab/nsp31683I1683LAtCTtG141All0
ORF1ab/nsp31683I1683VAtcGtc4141AY.250.000247
ORF1ab/nsp31683I1683TaTcaCc4141B.1.617.20.000154
ORF1ab/nsp31683I1683IatCatT3636B.1.2340.00475
ORF1ab/nsp31683I1683IatCatT3334B.10.000302
ORF1ab/nsp31683I1683IatCatA134B.10.000009
ORF1ab/nsp31683I1683TaTcaCc3131AY.30.000308
ORF1ab/nsp31683I1683VAtcGtc3131B.1.617.20.000117
ORF1ab/nsp31683I1683TaTcaCc3030P.10.000473
ORF1ab/nsp31683I1683TaTcaCc2929B.1.6090.013902
ORF1ab/nsp31683I1683TaTcaCc2828AY.40.000044
ORF1ab/nsp31683I1683IatCatT2727AY.90.001825
ORF1ab/nsp31683I1683LAtcCtc2727B.1.20.000238
ORF1ab/nsp31683I1683VAtcGtc2626AY.1030.000161
ORF1ab/nsp31683I1683TaTcaCc2424B.1.1.700.008186
ORF1ab/nsp31683I1683TaTcaCc2323AY.920.006607
ORF1ab/nsp31683I1683TaTcaCc2323G.10.958333
ORF1ab/nsp31683I1683IatCatT2022AY.250.00012
ORF1ab/nsp31683I1683IatCatA222AY.250.000012
ORF1ab/nsp31683I1683IatCatT2020P.10.000315
ORF1ab/nsp31683I1683IatCatT1919AY.46.60.001372
ORF1ab/nsp31683I1683IatCatT1919B.1.6370.001388
ORF1ab/nsp31683I1683VAtcGtc1717AY.750.000952
ORF1ab/nsp31683I1683TaTcaCc1717B.1.1870.566667
ORF1ab/nsp31683I1683VAtcGtc1616AY.430.000071
ORF1ab/nsp31683I1683IatCatT1616AY.440.000097
ORF1ab/nsp31683I1683TaTcaCc1414AY.430.000062
ORF1ab/nsp31683I1683TaTcaCc1414B.1.36.270.010687
ORF1ab/nsp31683I1683TaTcaCc1313AY.610.001362
ORF1ab/nsp31683I1683IatCatT1212AY.750.000672
ORF1ab/nsp31683I1683TaTcaCc1212B.1.1.2140.000665
ORF1ab/nsp31683I1683TaTcaCc1212B.1.1.670.054795
ORF1ab/nsp31683I1683TaTcaCc1212B.1.2210.000852
ORF1ab/nsp31683I1683FAtcTtc1111All0.000002
ORF1ab/nsp31683I1683IatCatT1111AY.1200.000409
ORF1ab/nsp31683I1683TaTcaCc1111AY.470.000342
ORF1ab/nsp31683I1683TaTcaCc1111B0.001406
ORF1ab/nsp31683I1683TaTcaCc1010AY.460.001041
ORF1ab/nsp31683I1683IatCatT910B.1.10.000163
ORF1ab/nsp31683I1683IatCatA110B.1.10.000018
ORF1ab/nsp31683I1683TaTcaCc1010B.1.258.181
ORF1ab/nsp31683I1683IatCatT1010C.370.001161
ORF1ab/nsp31683I1683IatCatT99B.1.177.820.004296
ORF1ab/nsp31683I1683IatCatT89B.1.20.00007
ORF1ab/nsp31683I1683IatCatA19B.1.20.000009
ORF1ab/nsp31683I1683IatCatT99B.1.438.10.000965
ORF1ab/nsp31683I1683TaTcaCc88A0.003096
ORF1ab/nsp31683I1683TaTcaCc88AY.46.60.000578
ORF1ab/nsp31683I1683VAtcGtc88B.10.000073
ORF1ab/nsp31683I1683VAtcGtc88B.1.1770.000105
ORF1ab/nsp31683I1683TaTcaCc88B.1.2220.013536
ORF1ab/nsp31683I1683IatCatT77AY.1000.000322
ORF1ab/nsp31683I1683VAtcGtc77AY.1020.000186
ORF1ab/nsp31683I1683TaTcaCc77AY.1190.000247
ORF1ab/nsp31683I1683TaTcaCc77AY.290.00011
ORF1ab/nsp31683I1683TaTcaCc77AY.39.10.000277
ORF1ab/nsp31683I1683TaTcaCc77B.1.177.730.003964
ORF1ab/nsp31683I1683IatCatT47B.1.2210.000284
ORF1ab/nsp31683I1683IatCatA37B.1.2210.000213
ORF1ab/nsp31683I1683TaTcaCc77B.1.3750.005738
ORF1ab/nsp31683I1683TaTcaCc77B.1.6000.040936
ORF1ab/nsp31683I1683TaTcaCc77B.4.10.132075
ORF1ab/nsp31683I1683TaTcaCc66AY.1180.000376
ORF1ab/nsp31683I1683IatCatT46AY.30.00004
ORF1ab/nsp31683I1683IatCatA26AY.30.00002
ORF1ab/nsp31683I1683TaTcaCc66AY.390.000148
ORF1ab/nsp31683I1683TaTcaCc66AY.420.000241
ORF1ab/nsp31683I1683TaTcaCc66B.1.177.60.005859
ORF1ab/nsp31683I1683TaTcaCc66B.1.177.860.001101
ORF1ab/nsp31683I1683IatCatT66B.1.351.50.003597
ORF1ab/nsp31683I1683TaTcaCc66B.1.5900.027273
ORF1ab/nsp31683I1683delATC---66B.1.617.20.000023
ORF1ab/nsp31683I1683IatCatT66R.10.00054
ORF1ab/nsp31683I1683TaTcaCc55AY.1020.000133
ORF1ab/nsp31683I1683IatCatT55AY.360.000741
ORF1ab/nsp31683I1683LAtcCtc55AY.440.00003
ORF1ab/nsp31683I1683VAtcGtc55B.1.1.3690.002231
ORF1ab/nsp31683I1683TaTcaCc55B.1.214.20.002998
ORF1ab/nsp31683I1683IatCatT55P.1.140.000239
ORF1ab/nsp31683I1683TaTcaCc55Q.70.005556
ORF1ab/nsp31683I1683IatCatT44AY.1020.000106
ORF1ab/nsp31683I1683TaTcaCc44AY.1170.000338
ORF1ab/nsp31683I1683IatCatT44AY.1190.000141
ORF1ab/nsp31683I1683TaTcaCc44AY.200.000155
ORF1ab/nsp31683I1683TaTcaCc44AY.260.000113
ORF1ab/nsp31683I1683VAtcGtc44AY.270.000259
ORF1ab/nsp31683I1683IatCatT44AY.290.000063
ORF1ab/nsp31683I1683IatCatT44AY.390.000099
ORF1ab/nsp31683I1683delATC---44AY.40.000006
ORF1ab/nsp31683I1683VAtcGtc44AY.410.001176
ORF1ab/nsp31683I1683VAtcGtc44AY.440.000024
ORF1ab/nsp31683I1683TaTcaCc44AY.60.000165
ORF1ab/nsp31683I1683IatCatT44AY.740.000463
ORF1ab/nsp31683I1683IatCatT44B.1.1.2140.000222
ORF1ab/nsp31683I1683TaTcaCc44B.1.1.390.002039
ORF1ab/nsp31683I1683IatCatT44B.1.1.5190.000159
ORF1ab/nsp31683I1683TaTcaCc44B.1.1.5190.000159
ORF1ab/nsp31683I1683delATC---44B.1.1770.000053
ORF1ab/nsp31683I1683IatCatT44B.1.2430.000278
ORF1ab/nsp31683I1683TaTcaCc44B.1.5260.000094
ORF1ab/nsp31683I1683TaTCaCT230.111111
ORF1ab/nsp31683I1683TaTcaCc130.055556
ORF1ab/nsp31683I1683del2ATc--c23All0
ORF1ab/nsp31683I1683SaTcaGc23All0
ORF1ab/nsp31683I1683del2ATC--N13All0
ORF1ab/nsp31683I1683SATcTCc13All0
ORF1ab/nsp31683I1683TaTcaCc33AU.30.006329
ORF1ab/nsp31683I1683TaTcaCc33AY.1000.000138
ORF1ab/nsp31683I1683TaTcaCc33AY.1130.000427
ORF1ab/nsp31683I1683IatCatT33AY.270.000194
ORF1ab/nsp31683I1683TaTcaCc33AY.3.10.000256
ORF1ab/nsp31683I1683FAtcTtc33AY.340.000291
ORF1ab/nsp31683I1683VAtcGtc33AY.360.000445
ORF1ab/nsp31683I1683VAtcGtc33AY.390.000074
ORF1ab/nsp31683I1683IatCatT33AY.4.20.000065
ORF1ab/nsp31683I1683IatCatT33AY.420.000121
ORF1ab/nsp31683I1683IatCatT33AY.460.000312
ORF1ab/nsp31683I1683VAtcGtc33AY.50.000062
ORF1ab/nsp31683I1683VAtcGtc33AY.60.000123
ORF1ab/nsp31683I1683IatCatT33AY.690.00056
ORF1ab/nsp31683I1683VAtcGtc33AY.740.000347
ORF1ab/nsp31683I1683TaTcaCc33AY.750.000168
ORF1ab/nsp31683I1683IatCatT33AY.840.001312
ORF1ab/nsp31683I1683VAtcGtc33B.1.10.000054
ORF1ab/nsp31683I1683IatCatT33B.1.1.120.022388
ORF1ab/nsp31683I1683VAtcGtc33B.1.1.2140.000166
ORF1ab/nsp31683I1683TaTcaCc33B.1.1.330.001263
ORF1ab/nsp31683I1683TaTcaCc33B.1.1.500.002037
ORF1ab/nsp31683I1683TaTcaCc33B.1.177.440.001557
ORF1ab/nsp31683I1683VAtcGtc33B.1.2340.000396
ORF1ab/nsp31683I1683TaTcaCc33B.1.360.000438
ORF1ab/nsp31683I1683TaTcaCc33B.1.4110.011111
ORF1ab/nsp31683I1683VAtcGtc33B.1.4270.000151
ORF1ab/nsp31683I1683TaTcaCc33B.1.5960.000261
ORF1ab/nsp31683I1683TaTcaCc33P.20.00056
ORF1ab/nsp31683I1683VAtcGtc220.111111
ORF1ab/nsp31683I1683del2ATc--c220.111111
ORF1ab/nsp31683I1683TaTcaCc22A.2.5.30.020619
ORF1ab/nsp31683I1683FAtcTtc22AD.20.000438
ORF1ab/nsp31683I1683MatCatG22All0
ORF1ab/nsp31683I1683delATC---22AY.1110.000366
ORF1ab/nsp31683I1683IatCatT22AY.1170.000169
ORF1ab/nsp31683I1683IatCatT22AY.1210.000271
ORF1ab/nsp31683I1683IatCatT22AY.130.000322
ORF1ab/nsp31683I1683delATC---22AY.190.002281
ORF1ab/nsp31683I1683TaTcaCc22AY.330.000134
ORF1ab/nsp31683I1683TaTcaCc22AY.4.20.000043
ORF1ab/nsp31683I1683IatCatT22AY.4.40.000818
ORF1ab/nsp31683I1683delATC---22AY.46.20.001271
ORF1ab/nsp31683I1683VAtcGtc22AY.46.60.000144
ORF1ab/nsp31683I1683IatCatT22AY.470.000062
ORF1ab/nsp31683I1683IatCatT22AY.50.000041
ORF1ab/nsp31683I1683IatCatT22AY.5.30.000675
ORF1ab/nsp31683I1683TaTcaCc22AY.9.20.000073
ORF1ab/nsp31683I1683VAtcGtc22AY.9.20.000073
ORF1ab/nsp31683I1683IatCatT22AY.9.20.000073
ORF1ab/nsp31683I1683IatCatT22AY.930.000546
ORF1ab/nsp31683I1683VAtcGtc22AY.99.20.000184
ORF1ab/nsp31683I1683delATC---22B.10.000018
ORF1ab/nsp31683I1683TaTcaCc22B.1.1.1530.002191
ORF1ab/nsp31683I1683IatCatT22B.1.1.1810.009091
ORF1ab/nsp31683I1683TaTcaCc22B.1.1.2160.001781
ORF1ab/nsp31683I1683IatCatT22B.1.1.2160.001781
ORF1ab/nsp31683I1683delATC---22B.1.1.2360.013793
ORF1ab/nsp31683I1683IatCatT22B.1.1.3060.000877
ORF1ab/nsp31683I1683VAtcGtc22B.1.1.3180.000604
ORF1ab/nsp31683I1683IatCatA22B.1.1.3260.003521
ORF1ab/nsp31683I1683VAtcGtc22B.1.1.4320.002532
ORF1ab/nsp31683I1683TaTcaCc22B.1.1.5250.010929
ORF1ab/nsp31683I1683TaTcaCc22B.1.1570.00597
ORF1ab/nsp31683I1683IatCatT22B.1.160.250.022222
ORF1ab/nsp31683I1683TaTcaCc22B.1.177.210.000153
ORF1ab/nsp31683I1683delATC---22B.1.177.210.000153
ORF1ab/nsp31683I1683IatCatT22B.1.177.320.002699
ORF1ab/nsp31683I1683delATC---22B.1.177.60.001953
ORF1ab/nsp31683I1683TaTcaCc22B.1.177.670.015267
ORF1ab/nsp31683I1683TaTcaCc22B.1.177.810.000379
ORF1ab/nsp31683I1683VAtcGtc22B.1.20.000018
ORF1ab/nsp31683I1683TaTcaCc22B.1.2370.00995
ORF1ab/nsp31683I1683TaTcaCc22B.1.2430.000139
ORF1ab/nsp31683I1683delATC---22B.1.2580.000133
ORF1ab/nsp31683I1683IatCatT22B.1.2980.004228
ORF1ab/nsp31683I1683IatCatT22B.1.3320.006993
ORF1ab/nsp31683I1683IatCatT22B.1.3510.000059
ORF1ab/nsp31683I1683TaTcaCc22B.1.3510.000059
ORF1ab/nsp31683I1683TaTcaCc22B.1.4290.000047
ORF1ab/nsp31683I1683TaTcaCc22B.1.4320.022472
ORF1ab/nsp31683I1683IatCatT22B.1.466.20.000782
ORF1ab/nsp31683I1683TaTcaCc22B.1.4800.004975
ORF1ab/nsp31683I1683IatCatT22B.1.5750.000607
ORF1ab/nsp31683I1683TaTcaCc22B.1.5950.000522
ORF1ab/nsp31683I1683IatCatT22B.1.617.10.000258
ORF1ab/nsp31683I1683LAtcCtc22B.1.617.20.000008
ORF1ab/nsp31683I1683FAtcTtc22B.1.617.20.000008
ORF1ab/nsp31683I1683TaTcaCc22B.1.6210.000177
ORF1ab/nsp31683I1683TaTcaCc22C.290.125
ORF1ab/nsp31683I1683IatCatT22D.20.00015
ORF1ab/nsp31683I1683VAtcGtc22P.10.000032
ORF1ab/nsp31683I1683TaTcaCc22Z.10.00578
ORF1ab/nsp31683I1683delATC---11A0.000387
ORF1ab/nsp31683I1683IatCatA11A.2.40.003367
ORF1ab/nsp31683I1683IatCatT11A.2.50.000499
ORF1ab/nsp31683I1683TaTcaCc11A.2.50.000499
ORF1ab/nsp31683I1683TaTcaCc11A.30.002096
ORF1ab/nsp31683I1683AATcGCc11All0
ORF1ab/nsp31683I1683GATCGGT11All0
ORF1ab/nsp31683I1683PATcCCc11All0
ORF1ab/nsp31683I1683FAtcTtc11AU.30.00211
ORF1ab/nsp31683I1683TaTcaCc11AY.100.00053
ORF1ab/nsp31683I1683LAtcCtc11AY.1030.000006
ORF1ab/nsp31683I1683IatCatT11AY.1060.000335
ORF1ab/nsp31683I1683TaTcaCc11AY.1070.000466
ORF1ab/nsp31683I1683IatCatT11AY.1130.000142
ORF1ab/nsp31683I1683TaTcaCc11AY.1160.000287
ORF1ab/nsp31683I1683VAtcGtc11AY.1180.000063
ORF1ab/nsp31683I1683VAtcGtc11AY.1200.000037
ORF1ab/nsp31683I1683delATC---11AY.1200.000037
ORF1ab/nsp31683I1683VAtcGtc11AY.120.20.001285
ORF1ab/nsp31683I1683IatCatT11AY.160.00038
ORF1ab/nsp31683I1683IatCatA11AY.190.00114
ORF1ab/nsp31683I1683IatCatT11AY.200.000039
ORF1ab/nsp31683I1683IatCatT11AY.230.00007
ORF1ab/nsp31683I1683delATC---11AY.250.000006
ORF1ab/nsp31683I1683VAtcGtc11AY.260.000028
ORF1ab/nsp31683I1683VAtcGtc11AY.290.000016
ORF1ab/nsp31683I1683IatCatA11AY.29.10.000221
ORF1ab/nsp31683I1683AATcGCc11AY.30.00001
ORF1ab/nsp31683I1683IatCatT11AY.300.000396
ORF1ab/nsp31683I1683TaTcaCc11AY.300.000396
ORF1ab/nsp31683I1683delATC---11AY.330.000067
ORF1ab/nsp31683I1683IatCatT11AY.330.000067
ORF1ab/nsp31683I1683VAtcGtc11AY.39.10.00004
ORF1ab/nsp31683I1683LAtcCtc11AY.40.000002
ORF1ab/nsp31683I1683FAtcTtc11AY.40.000002
ORF1ab/nsp31683I1683SaTcaGc11AY.4.20.000022
ORF1ab/nsp31683I1683VAtcGtc11AY.4.20.000022
ORF1ab/nsp31683I1683delATC---11AY.4.50.000107
ORF1ab/nsp31683I1683TaTcaCc11AY.4.50.000107
ORF1ab/nsp31683I1683VAtcGtc11AY.420.00004
ORF1ab/nsp31683I1683delATC---11AY.430.000004
ORF1ab/nsp31683I1683LAtcCtc11AY.430.000004
ORF1ab/nsp31683I1683PATcCCc11AY.430.000004
ORF1ab/nsp31683I1683delATC---11AY.440.000006
ORF1ab/nsp31683I1683IatCatT11AY.450.000122
ORF1ab/nsp31683I1683VAtcGtc11AY.450.000122
ORF1ab/nsp31683I1683VAtcGtc11AY.460.000104
ORF1ab/nsp31683I1683TaTcaCc11AY.46.40.000165
ORF1ab/nsp31683I1683TaTcaCc11AY.46.50.000198
ORF1ab/nsp31683I1683IatCatT11AY.480.000465
ORF1ab/nsp31683I1683delATC---11AY.50.000021
ORF1ab/nsp31683I1683IatCatT11AY.5.40.000277
ORF1ab/nsp31683I1683TaTcaCc11AY.5.40.000277
ORF1ab/nsp31683I1683delATC---11AY.520.000814
ORF1ab/nsp31683I1683IatCatT11AY.540.000095
ORF1ab/nsp31683I1683TaTcaCc11AY.540.000095
ORF1ab/nsp31683I1683VAtcGtc11AY.590.00053
ORF1ab/nsp31683I1683TaTcaCc11AY.590.00053
ORF1ab/nsp31683I1683delATC---11AY.60.000041
ORF1ab/nsp31683I1683TaTcaCc11AY.600.000938
ORF1ab/nsp31683I1683TaTcaCc11AY.680.000274
ORF1ab/nsp31683I1683VAtcGtc11AY.70.000196
ORF1ab/nsp31683I1683IatCatT11AY.7.10.000113
ORF1ab/nsp31683I1683TaTcaCc11AY.700.000209
ORF1ab/nsp31683I1683TaTcaCc11AY.710.000475
ORF1ab/nsp31683I1683VAtcGtc11AY.710.000475
ORF1ab/nsp31683I1683TaTcaCc11AY.75.10.00018
ORF1ab/nsp31683I1683IatCatT11AY.75.10.00018
ORF1ab/nsp31683I1683delATC---11AY.810.001992
ORF1ab/nsp31683I1683IatCatT11AY.820.001357
ORF1ab/nsp31683I1683TaTcaCc11AY.840.000437
ORF1ab/nsp31683I1683delATC---11AY.840.000437
ORF1ab/nsp31683I1683IatCatA11AY.870.000833
ORF1ab/nsp31683I1683delATC---11AY.90.000068
ORF1ab/nsp31683I1683TaTcaCc11AY.90.000068
ORF1ab/nsp31683I1683IatCatA11AY.9.10.000084
ORF1ab/nsp31683I1683IatCatT11AY.920.000287
ORF1ab/nsp31683I1683VAtcGtc11AY.960.002075
ORF1ab/nsp31683I1683VAtCGtT11AY.98.10.000048
ORF1ab/nsp31683I1683GATCGGT11AY.990.001049
ORF1ab/nsp31683I1683TaTcaCc11AY.99.20.000092
ORF1ab/nsp31683I1683VAtcGtc11B0.000128
ORF1ab/nsp31683I1683LAtCTtG11B.1.10.000018
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.100.001115
ORF1ab/nsp31683I1683IatCatT11B.1.1.1290.009174
ORF1ab/nsp31683I1683VAtcGtc11B.1.1.1410.002012
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.1610.003534
ORF1ab/nsp31683I1683IatCatT11B.1.1.1610.003534
ORF1ab/nsp31683I1683delATC---11B.1.1.1700.001247
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.1700.001247
ORF1ab/nsp31683I1683IatCatT11B.1.1.1760.000439
ORF1ab/nsp31683I1683VAtcGtc11B.1.1.1760.000439
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.2220.000204
ORF1ab/nsp31683I1683VAtcGtc11B.1.1.2630.001558
ORF1ab/nsp31683I1683IatCatT11B.1.1.2840.000107
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.2880.001916
ORF1ab/nsp31683I1683IatCatT11B.1.1.2940.001266
ORF1ab/nsp31683I1683IatCatT11B.1.1.330.000421
ORF1ab/nsp31683I1683SaTcaGc11B.1.1.3690.000446
ORF1ab/nsp31683I1683MatCatG11B.1.1.370.000193
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.370.000193
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.3720.000689
ORF1ab/nsp31683I1683IatCatA11B.1.1.3770.001381
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.3890.006061
ORF1ab/nsp31683I1683IatCatT11B.1.1.4340.000349
ORF1ab/nsp31683I1683delATC---11B.1.1.460.004367
ORF1ab/nsp31683I1683VAtcGtc11B.1.1.4610.012048
ORF1ab/nsp31683I1683TaTcaCc11B.1.1.5260.003546
ORF1ab/nsp31683I1683IatCatA11B.1.1.630.000386
ORF1ab/nsp31683I1683FAtcTtc11B.1.1.70.000001
ORF1ab/nsp31683I1683SATcTCc11B.1.1.70.000001
ORF1ab/nsp31683I1683LAtcCtc11B.1.1.70.000001
ORF1ab/nsp31683I1683IatCatT11B.1.1.710.006061
ORF1ab/nsp31683I1683TaTcaCc11B.1.1110.001175
ORF1ab/nsp31683I1683TaTcaCc11B.1.1460.004237
ORF1ab/nsp31683I1683MatCatG11B.1.1570.002985
ORF1ab/nsp31683I1683VAtcGtc11B.1.1600.000031
ORF1ab/nsp31683I1683IatCatT11B.1.1770.000013
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.120.000152
ORF1ab/nsp31683I1683IatCatT11B.1.177.160.000664
ORF1ab/nsp31683I1683VAtcGtc11B.1.177.170.000821
ORF1ab/nsp31683I1683delATC---11B.1.177.180.00116
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.280.007407
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.40.000211
ORF1ab/nsp31683I1683delATC---11B.1.177.40.000211
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.420.000894
ORF1ab/nsp31683I1683IatCatT11B.1.177.440.000519
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.500.004695
ORF1ab/nsp31683I1683delATC---11B.1.177.540.000606
ORF1ab/nsp31683I1683delATC---11B.1.177.570.000281
ORF1ab/nsp31683I1683IatCatT11B.1.177.570.000281
ORF1ab/nsp31683I1683delATC---11B.1.177.70.000165
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.70.000165
ORF1ab/nsp31683I1683VAtcGtc11B.1.177.70.000165
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.720.00339
ORF1ab/nsp31683I1683TaTcaCc11B.1.177.750.001041
ORF1ab/nsp31683I1683delATC---11B.1.1790.003759
ORF1ab/nsp31683I1683TaTcaCc11B.1.2060.000816
ORF1ab/nsp31683I1683TaTcaCc11B.1.221.10.002907
ORF1ab/nsp31683I1683TaTcaCc11B.1.2420.018868
ORF1ab/nsp31683I1683TaTcaCc11B.1.2470.014925
ORF1ab/nsp31683I1683delATC---11B.1.258.100.011364
ORF1ab/nsp31683I1683TaTcaCc11B.1.2840.013158
ORF1ab/nsp31683I1683TaTcaCc11B.1.2930.0125
ORF1ab/nsp31683I1683IatCatT11B.1.3110.000275
ORF1ab/nsp31683I1683TaTcaCc11B.1.3260.007576
ORF1ab/nsp31683I1683TaTcaCc11B.1.3490.000715
ORF1ab/nsp31683I1683IatCatA11B.1.351.20.000303
ORF1ab/nsp31683I1683VAtcGtc11B.1.360.000146
ORF1ab/nsp31683I1683IatCatT11B.1.360.000146
ORF1ab/nsp31683I1683delATC---11B.1.360.000146
ORF1ab/nsp31683I1683IatCatT11B.1.36.220.001208
ORF1ab/nsp31683I1683LAtcCtc11B.1.36.290.000517
ORF1ab/nsp31683I1683TaTcaCc11B.1.36.350.002604
ORF1ab/nsp31683I1683TaTcaCc11B.1.3620.001541
ORF1ab/nsp31683I1683IatCatT11B.1.3670.000792
ORF1ab/nsp31683I1683VAtcGtc11B.1.3670.000792
ORF1ab/nsp31683I1683TaTcaCc11B.1.3800.006623
ORF1ab/nsp31683I1683TaTcaCc11B.1.4060.006061
ORF1ab/nsp31683I1683delATC---11B.1.4090.000781
ORF1ab/nsp31683I1683TaTcaCc11B.1.4160.001269
ORF1ab/nsp31683I1683delATC---11B.1.416.10.001563
ORF1ab/nsp31683I1683VAtcGtc11B.1.4290.000024
ORF1ab/nsp31683I1683IatCatT11B.1.4290.000024
ORF1ab/nsp31683I1683IatCatT11B.1.4320.011236
ORF1ab/nsp31683I1683VAtcGtc11B.1.466.20.000391
ORF1ab/nsp31683I1683TaTcaCc11B.1.4730.019231
ORF1ab/nsp31683I1683IatCatT11B.1.4990.00105
ORF1ab/nsp31683I1683delATC---11B.1.5010.007353
ORF1ab/nsp31683I1683IatCatT11B.1.5240.001406
ORF1ab/nsp31683I1683TaTcaCc11B.1.5250.000113
ORF1ab/nsp31683I1683delATC---11B.1.5610.000397
ORF1ab/nsp31683I1683FAtcTtc11B.1.5640.000426
ORF1ab/nsp31683I1683TaTcaCc11B.1.5760.000907
ORF1ab/nsp31683I1683IatCatA11B.1.5820.000491
ORF1ab/nsp31683I1683del2ATC--N11B.1.5960.000087
ORF1ab/nsp31683I1683TaTcaCc11B.1.5990.00365
ORF1ab/nsp31683I1683delATC---11B.1.6060.006024
ORF1ab/nsp31683I1683IatCatT11B.1.6150.04
ORF1ab/nsp31683I1683IatCatT11B.1.617.30.002985
ORF1ab/nsp31683I1683TaTcaCc11B.1.6280.000352
ORF1ab/nsp31683I1683IatCatT11B.1.6280.000352
ORF1ab/nsp31683I1683TaTcaCc11B.1.6370.000073
ORF1ab/nsp31683I1683TaTcaCc11B.1.6380.052632
ORF1ab/nsp31683I1683TaTcaCc11B.1.9.50.005682
ORF1ab/nsp31683I1683VAtcGtc11B.40.002208
ORF1ab/nsp31683I1683delATC---11B.4.40.018868
ORF1ab/nsp31683I1683VAtcGtc11B.60.00091
ORF1ab/nsp31683I1683IatCatT11B.610.005747
ORF1ab/nsp31683I1683IatCatA11C.350.000774
ORF1ab/nsp31683I1683VAtcGtc11C.370.000116
ORF1ab/nsp31683I1683TaTcaCc11K.10.02381
ORF1ab/nsp31683I1683LAtcCtc11P.10.000016
ORF1ab/nsp31683I1683delATC---11P.10.000016
ORF1ab/nsp31683I1683delATC---11P.1.10.000318
ORF1ab/nsp31683I1683TaTcaCc11P.1.70.000319
ORF1ab/nsp31683I1683VAtcGtc11P.20.000187
ORF1ab/nsp31683I1683IatCatT11P.20.000187
ORF1ab/nsp31683I1683IatCatT11Q.20.000613
ORF1ab/nsp31683I1683TaTcaCc11Q.30.000145
ORF1ab/nsp31683I1683IatCatT11Q.40.000455