CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1682 | S1682F | S2500F | nonsyn | tCc | tTc | 12930 | 12899 | 0.997602 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682F | S2500F | nonsyn | tCC | tTT | 12930 | 31 | 0.00239753 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682S | S2500S | syn | tcC | tcT | 10510 | 10217 | 0.972122 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682S | S2500S | syn | tcC | tcA | 10510 | 259 | 0.0246432 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682S | S2500S | syn | tcC | tcG | 10510 | 34 | 0.00323501 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682del | S2500del | del | TCC | --- | 117 | 117 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682Y | S2500Y | nonsyn | tCc | tAc | 71 | 71 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682A | S2500A | nonsyn | Tcc | Gcc | 30 | 29 | 0.966667 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682A | S2500A | nonsyn | TcC | GcT | 30 | 1 | 0.0333333 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682P | S2500P | nonsyn | Tcc | Ccc | 9 | 9 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682T | S2500T | nonsyn | Tcc | Acc | 8 | 8 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682C | S2500C | nonsyn | tCc | tGc | 5 | 5 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682del1 | S2500del1 | del | tCc | t-c | 3 | 3 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682G | S2500G | nonsyn | TCc | GGc | 2 | 2 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682V | S2500V | nonsyn | TCc | GTc | 2 | 2 | 1 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682L | S2500L | nonsyn | TCc | CTc | 2 | 1 | 0.5 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682L | S2500L | nonsyn | TCC | CTG | 2 | 1 | 0.5 | 7763-7765 |
ORF1ab/nsp3 | 1682 | S1682X | S2500X | nonsyn | tCC | tAA | 1 | 1 | 1 | 7763-7765 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 12899 | 12930 | All | 0.002467 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 31 | 12930 | All | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10217 | 10510 | All | 0.001954 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 259 | 10510 | All | 0.00005 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 34 | 10510 | All | 0.000007 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6090 | 6108 | B.1.1.7 | 0.005452 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 18 | 6108 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1764 | 1774 | B.1.1.7 | 0.001579 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 8 | 1774 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 2 | 1774 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1279 | 1284 | AY.4 | 0.001991 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 5 | 1284 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1187 | 1187 | AY.44 | 0.007225 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 585 | 594 | AY.4 | 0.000911 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 5 | 594 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 4 | 594 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 497 | 499 | B.1.617.2 | 0.001871 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 2 | 499 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 403 | 403 | AY.4.2 | 0.008741 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 237 | 399 | AY.25 | 0.001426 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 162 | 399 | AY.25 | 0.000974 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 352 | 353 | AY.43 | 0.00156 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 353 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 294 | 294 | AY.103 | 0.001825 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 294 | 294 | B.1.1.519 | 0.011675 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 282 | 288 | B.1 | 0.002583 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 4 | 288 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 2 | 288 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 279 | 279 | AY.44 | 0.001698 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 272 | 273 | B.1.2 | 0.002395 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 273 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 271 | 271 | B.1.617.2 | 0.00102 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 248 | 248 | AY.103 | 0.00154 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 231 | 231 | AY.29 | 0.003644 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 228 | 228 | B.1.1.50 | 0.154786 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 227 | 227 | AY.3 | 0.002258 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 224 | 224 | B.1.2 | 0.001972 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 202 | 202 | P.7 | 0.882096 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 192 | 192 | AY.25 | 0.001155 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 178 | 178 | B.1.36.18 | 0.07479 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 172 | 172 | B.1.621 | 0.015225 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 162 | 162 | B.1.9.4 | 0.993865 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 157 | 159 | B.1 | 0.001438 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 2 | 159 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 158 | 158 | B.1.9 | 0.975309 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 157 | 157 | B.1.9.5 | 0.892045 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 156 | 156 | B.1.526 | 0.003667 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 152 | 152 | P.1 | 0.002395 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 151 | 151 | AY.34 | 0.014642 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 144 | 144 | B.1.36 | 0.02101 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 143 | 143 | AY.43 | 0.000634 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 128 | 129 | AY.9 | 0.008652 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 129 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 124 | 124 | AY.47 | 0.003857 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 120 | 122 | P.1 | 0.00189 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 2 | 122 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 117 | 117 | All | 0.000022 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 114 | 117 | B.1.429 | 0.002682 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 3 | 117 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 90 | 112 | B.1.177 | 0.001185 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 21 | 112 | B.1.177 | 0.000277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 1 | 112 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 107 | 107 | AY.95 | 0.081431 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 89 | 93 | B.1.1 | 0.001615 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 4 | 93 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 92 | 92 | AY.5 | 0.0019 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 87 | 89 | B.1.429 | 0.002047 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 2 | 89 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 88 | 88 | AY.75 | 0.00493 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 87 | 87 | B.1.575 | 0.026396 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 82 | 82 | B.1.1 | 0.001488 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 82 | 82 | B.1.177 | 0.00108 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 77 | 77 | AY.75 | 0.004314 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 71 | 71 | All | 0.000014 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 68 | 68 | P.1.1 | 0.021601 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 66 | 66 | B.1.258 | 0.004392 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 64 | 64 | AY.3.1 | 0.005457 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 61 | 61 | AY.113 | 0.008686 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 61 | 61 | AY.36 | 0.009041 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 60 | 61 | AY.39 | 0.001483 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 61 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 61 | 61 | B.1.526 | 0.001434 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 60 | 60 | C.37 | 0.006964 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 57 | 58 | AY.3 | 0.000567 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 58 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 57 | 57 | AY.67 | 0.026462 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 56 | 56 | AY.120 | 0.002082 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 54 | 54 | AY.33 | 0.003606 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 52 | 53 | B.1.36 | 0.007587 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 1 | 53 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 52 | 52 | AY.100 | 0.002392 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 52 | 52 | B.1.177.17 | 0.042693 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 51 | 51 | B.1.1.7 | 0.000046 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 45 | 49 | B.1.596 | 0.003921 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 49 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 48 | 48 | AY.102 | 0.001273 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 46 | 46 | B.1.351 | 0.001367 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 45 | 45 | AY.22 | 0.094142 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 45 | 45 | B.1.428.3 | 0.576923 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 44 | 44 | AY.102 | 0.001167 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 44 | 44 | AY.9.2 | 0.001616 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 43 | 43 | AY.46.6 | 0.003105 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 42 | 42 | B.1.1.318 | 0.012674 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 42 | 42 | B.1.351.2 | 0.012708 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 41 | 41 | C.1.2 | 0.174468 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 38 | 38 | AY.26 | 0.001076 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 38 | 38 | AY.99.2 | 0.003502 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 36 | 37 | AY.29 | 0.000568 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 1 | 37 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 36 | 36 | AY.120 | 0.001338 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 36 | 36 | AY.45 | 0.004381 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 35 | 35 | B.1.627 | 0.070707 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 33 | 33 | B.1.588 | 0.030027 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 31 | 31 | B.1.351 | 0.000922 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 31 | 31 | B.1.466.2 | 0.012128 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 31 | 31 | B.1.9.1 | 1 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 31 | 31 | N.5 | 0.05477 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 29 | 30 | All | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682A | TcC | GcT | 1 | 30 | All | 0 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 30 | 30 | B.1.160 | 0.000936 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 28 | 28 | AY.5 | 0.000578 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 26 | 26 | B.1.525 | 0.002942 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 26 | 26 | B.1.9.3 | 1 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 26 | 26 | Q.2 | 0.015951 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 25 | 25 | AY.46.5 | 0.00496 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 25 | 25 | AY.5.1 | 0.093985 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 25 | 25 | B.1.1.28 | 0.007781 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 25 | 25 | B.1.1.369 | 0.011156 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 24 | 24 | B.1.221.3 | 0.02 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 23 | 23 | AY.39.1 | 0.000911 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 23 | 23 | B.1.221 | 0.001634 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 23 | 23 | B.1.575 | 0.006978 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 22 | 22 | AY.39 | 0.000544 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 22 | 22 | B.1.243 | 0.001531 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 22 | 22 | B.1.438.1 | 0.00236 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 22 | 22 | B.1.561 | 0.008734 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 22 | 22 | B.1.596 | 0.001917 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 22 | 22 | P.2 | 0.004106 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 21 | 21 | AY.92 | 0.006033 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 21 | 21 | B.1.258.17 | 0.002183 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 20 | 20 | B.1.351.3 | 0.017528 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 19 | 19 | AY.119 | 0.000671 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 19 | 19 | B.1.232 | 0.01021 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 19 | 19 | B.1.425 | 0.056886 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 19 | 19 | B.1.525 | 0.00215 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 19 | 19 | P.1.14 | 0.000908 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 18 | 18 | AY.4.5 | 0.001935 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 18 | 18 | B.1.1.389 | 0.109091 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 18 | 18 | B.1.177.4 | 0.003799 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 14 | 18 | Q.3 | 0.00203 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 18 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 18 | 18 | R.1 | 0.00162 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 17 | 17 | AY.119 | 0.0006 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 17 | 17 | AY.9.1 | 0.001423 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 17 | 17 | B.1.1.434 | 0.005925 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 17 | 17 | B.1.160 | 0.00053 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 17 | 17 | B.1.427 | 0.000858 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 17 | 17 | P.2 | 0.003173 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 16 | 16 | AY.33 | 0.001068 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 16 | 16 | AY.42 | 0.000644 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 16 | 16 | B.1.1.214 | 0.000887 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 15 | 15 | AY.121 | 0.00203 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 15 | 15 | B.1.177.86 | 0.002752 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 15 | 15 | Q.8 | 0.002474 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 14 | 14 | AY.118 | 0.000877 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 14 | 14 | AY.39.1 | 0.000555 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 14 | 14 | AY.54 | 0.001335 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 14 | 14 | B.1.177.81 | 0.002651 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 14 | 14 | B.1.218 | 0.072165 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 14 | 14 | B.1.565 | 0.011345 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 14 | 14 | P.1.14 | 0.000669 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 13 | 13 | AD.2 | 0.002847 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 13 | 13 | AY.117 | 0.001099 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 13 | 13 | AY.23 | 0.000907 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 13 | 13 | B.1.258.17 | 0.001352 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 13 | 13 | B.1.505 | 0.057018 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 13 | 13 | B.1.597 | 0.060185 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 13 | 13 | C.36.3.1 | 0.035326 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 13 | 13 | C.39 | 0.245283 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 13 | 13 | Q.1 | 0.001642 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 12 | 12 | AY.106 | 0.004019 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 12 | 12 | AY.29.1 | 0.002646 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 12 | 12 | B.1.177.57 | 0.003372 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 12 | 12 | B.1.214.2 | 0.007194 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 12 | 12 | B.1.436 | 0.012346 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 12 | 12 | B.1.466.2 | 0.004695 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 12 | 12 | B.1.621 | 0.001062 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 11 | 11 | B.1.1.192 | 0.025404 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 11 | 11 | B.1.177.17 | 0.009031 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 11 | 11 | B.1.208 | 0.44 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 10 | 10 | AY.106 | 0.003349 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 10 | 10 | B.1.1.28 | 0.003112 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10 | 10 | B.1.239 | 0.01221 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10 | 10 | B.1.9.2 | 1 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 10 | 10 | P.1.7 | 0.003193 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 10 | 10 | Q.3 | 0.00145 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | AY.109 | 0.006657 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 9 | 9 | AY.120.1 | 0.002889 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 9 | 9 | AY.4.3 | 0.007576 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | B.1.1.270 | 0.092784 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | B.1.1.317 | 0.003705 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | B.1.177.4 | 0.0019 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 9 | 9 | B.1.527 | 0.033333 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 8 | 8 | All | 0.000002 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | AY.121 | 0.001083 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | AY.56 | 0.012841 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | AY.78 | 0.012327 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | B.1.1.214 | 0.000444 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | B.1.1.318 | 0.002414 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | B.1.177.35 | 0.005529 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | B.1.177.57 | 0.002248 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | B.1.221 | 0.000568 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | B.1.563 | 0.135593 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 8 | 8 | B.1.628 | 0.002819 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 8 | 8 | C.18 | 0.020725 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 8 | 8 | C.36 | 0.007286 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 7 | 7 | AY.24 | 0.003017 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 7 | 7 | AY.35 | 0.001631 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 7 | 7 | B.1.369 | 0.001997 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 7 | 7 | B.1.396 | 0.00494 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 7 | 7 | B.1.409 | 0.005469 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 7 | 7 | B.1.497 | 0.002203 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | AY.120.1 | 0.001926 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | B.1.1.163 | 0.045802 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | B.1.1.174 | 0.02027 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | B.1.1.306 | 0.00263 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | B.1.1.433 | 0.008547 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | B.1.1.526 | 0.021277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | B.1.13 | 0.014252 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | B.1.160.14 | 0.012712 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | B.1.177.42 | 0.005367 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | B.1.351.2 | 0.001815 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 6 | 6 | B.1.595 | 0.001566 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | C.36.3 | 0.003403 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | C.36.3.1 | 0.016304 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 1682 | S1682C | tCc | tGc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | AM.4 | 0.017857 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | AY.78 | 0.007704 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | AY.81 | 0.00996 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | B.1.177.21 | 0.000382 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | B.1.247 | 0.074627 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | B.1.265 | 0.006353 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | B.1.564 | 0.002129 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | C.30 | 0.008636 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.1.263 | 0.006231 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.1.523 | 0.00625 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.177.75 | 0.004162 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.351.5 | 0.002398 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.425 | 0.011976 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.443 | 0.018692 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | B.1.564 | 0.001704 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | B.1.587 | 0.00759 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | A.21 | 0.00831 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | A.3 | 0.006289 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | A.3 | 0.006289 |
ORF1ab/nsp3 | 1682 | S1682del1 | tCc | t-c | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | AY.104 | 0.005952 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 2 | 3 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 3 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.1.277 | 0.002276 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.177.46 | 0.002755 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.281 | 0.065217 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.346 | 0.003932 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.456 | 0.009804 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.558 | 0.013699 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 3 | 3 | C.1 | 0.007177 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 1682 | S1682C | tCc | tGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1682 | S1682G | TCc | GGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 2 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 1 | 2 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1682 | S1682V | TCc | GTc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1682 | S1682G | TCc | GGc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1682 | S1682L | TCC | CTG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1682 | S1682L | TCc | CTc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AS.1 | 0.019048 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcG | 1 | 2 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.232 | 0.00363 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | B.1.1.236 | 0.013793 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.240 | 0.00939 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.304 | 0.005618 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.316 | 0.00185 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.1.334 | 0.032787 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 2 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.127 | 0.004396 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | B.1.177.6 | 0.001953 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.177.69 | 0.002967 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.179 | 0.007519 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.192 | 0.018519 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 2 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 1 | 2 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.281 | 0.043478 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.337 | 0.011173 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.350 | 0.005865 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.415.1 | 0.015152 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1682 | S1682V | TCc | GTc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.1.8 | 0.003945 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | C.32 | 0.046512 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | A.11 | 0.058824 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | A.23 | 0.010526 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp3 | 1682 | S1682X | tCC | tAA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AN.1 | 0.02 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1682 | S1682A | Tcc | Gcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1682 | S1682del1 | tCc | t-c | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1682 | S1682C | tCc | tGc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1682 | S1682L | TCc | CTc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1682 | S1682del1 | tCc | t-c | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1682 | S1682L | TCC | CTG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.182 | 0.090909 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.256 | 0.013699 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.388 | 0.045455 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.400 | 0.05 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1682 | S1682X | tCC | tAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1682 | S1682A | TcC | GcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp3 | 1682 | S1682C | tCc | tGc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.49 | 0.037037 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.240.2 | 0.030303 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.36.12 | 0.009615 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.388 | 0.090909 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1682 | S1682P | Tcc | Ccc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.1.603 | 0.010638 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp3 | 1682 | S1682del1 | tCc | t-c | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1682 | S1682Y | tCc | tAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1682 | S1682C | tCc | tGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.1.81 | 0.021277 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | C.12 | 0.007194 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 1682 | S1682F | tCC | tTT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | G.1 | 0.041667 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | M.1 | 0.023256 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1682 | S1682T | Tcc | Acc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1682 | S1682del | TCC | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | P.5 | 0.013699 |
ORF1ab/nsp3 | 1682 | S1682F | tCc | tTc | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | Q.6 | 0.006623 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcA | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp3 | 1682 | S1682S | tcC | tcT | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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