CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1680 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31680N1680delN2498deldelAAT---11011017757-7759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31680N1680delAAT---110110All0.000021
ORF1ab/nsp31680N1680delAAT---4949B.1.1.70.000044
ORF1ab/nsp31680N1680delAAT---55B.1.617.20.000019
ORF1ab/nsp31680N1680delAAT---44AY.40.000006
ORF1ab/nsp31680N1680delAAT---33B.1.1770.00004
ORF1ab/nsp31680N1680delAAT---22AY.1110.000366
ORF1ab/nsp31680N1680delAAT---22AY.1200.000074
ORF1ab/nsp31680N1680delAAT---22AY.190.002281
ORF1ab/nsp31680N1680delAAT---22AY.46.20.001271
ORF1ab/nsp31680N1680delAAT---22B.10.000018
ORF1ab/nsp31680N1680delAAT---22B.1.1.2360.013793
ORF1ab/nsp31680N1680delAAT---22B.1.177.210.000153
ORF1ab/nsp31680N1680delAAT---22B.1.177.60.001953
ORF1ab/nsp31680N1680delAAT---22B.1.2580.000133
ORF1ab/nsp31680N1680delAAT---11A0.000387
ORF1ab/nsp31680N1680delAAT---11AY.250.000006
ORF1ab/nsp31680N1680delAAT---11AY.330.000067
ORF1ab/nsp31680N1680delAAT---11AY.4.50.000107
ORF1ab/nsp31680N1680delAAT---11AY.430.000004
ORF1ab/nsp31680N1680delAAT---11AY.440.000006
ORF1ab/nsp31680N1680delAAT---11AY.50.000021
ORF1ab/nsp31680N1680delAAT---11AY.520.000814
ORF1ab/nsp31680N1680delAAT---11AY.60.000041
ORF1ab/nsp31680N1680delAAT---11AY.810.001992
ORF1ab/nsp31680N1680delAAT---11AY.840.000437
ORF1ab/nsp31680N1680delAAT---11AY.90.000068
ORF1ab/nsp31680N1680delAAT---11B.1.1.1700.001247
ORF1ab/nsp31680N1680delAAT---11B.1.1.460.004367
ORF1ab/nsp31680N1680delAAT---11B.1.177.180.00116
ORF1ab/nsp31680N1680delAAT---11B.1.177.40.000211
ORF1ab/nsp31680N1680delAAT---11B.1.177.540.000606
ORF1ab/nsp31680N1680delAAT---11B.1.177.570.000281
ORF1ab/nsp31680N1680delAAT---11B.1.177.70.000165
ORF1ab/nsp31680N1680delAAT---11B.1.1790.003759
ORF1ab/nsp31680N1680delAAT---11B.1.258.100.011364
ORF1ab/nsp31680N1680delAAT---11B.1.360.000146
ORF1ab/nsp31680N1680delAAT---11B.1.4090.000781
ORF1ab/nsp31680N1680delAAT---11B.1.416.10.001563
ORF1ab/nsp31680N1680delAAT---11B.1.5610.000397
ORF1ab/nsp31680N1680delAAT---11B.1.5960.000087
ORF1ab/nsp31680N1680delAAT---11B.1.6060.006024
ORF1ab/nsp31680N1680delAAT---11B.4.40.018868
ORF1ab/nsp31680N1680delAAT---11P.10.000016
ORF1ab/nsp31680N1680delAAT---11P.1.10.000318
ORF1ab/nsp31680N1680delAAT---11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.