CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1672 & Codon = aGc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31672I1672SI2490SnonsynaTcaGc1671660.9940127733-7735

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31672I1672SaTcaGc166167All0.000032
ORF1ab/nsp31672I1672SaTcaGc4949AY.200.001904
ORF1ab/nsp31672I1672SaTcaGc3131B.1.10.000562
ORF1ab/nsp31672I1672SaTcaGc1818AY.50.000372
ORF1ab/nsp31672I1672SaTcaGc1414AY.880.012378
ORF1ab/nsp31672I1672SaTcaGc1414B.1.1.70.000013
ORF1ab/nsp31672I1672SaTcaGc66B.1.5260.000141
ORF1ab/nsp31672I1672SaTcaGc55AY.290.000079
ORF1ab/nsp31672I1672SaTcaGc55AY.40.000008
ORF1ab/nsp31672I1672SaTcaGc33B.1.617.20.000011
ORF1ab/nsp31672I1672SaTcaGc22AY.250.000012
ORF1ab/nsp31672I1672SaTcaGc22AY.420.00008
ORF1ab/nsp31672I1672SaTcaGc11AY.1000.000046
ORF1ab/nsp31672I1672SaTcaGc11AY.1020.000027
ORF1ab/nsp31672I1672SaTcaGc11AY.1170.000085
ORF1ab/nsp31672I1672SaTcaGc11AY.1180.000063
ORF1ab/nsp31672I1672SaTcaGc11AY.23.10.000417
ORF1ab/nsp31672I1672SaTcaGc11AY.430.000004
ORF1ab/nsp31672I1672SaTcaGc11AY.610.000105
ORF1ab/nsp31672I1672SaTcaGc11AY.70.000196
ORF1ab/nsp31672I1672SaTcaGc11AY.75.10.00018
ORF1ab/nsp31672I1672SaTcaGc11AY.770.001127
ORF1ab/nsp31672I1672SaTcaGc11B.10.000009
ORF1ab/nsp31672I1672SaTcaGc11B.1.1.2530.002506
ORF1ab/nsp31672I1672SaTcaGc11B.1.36.100.004785
ORF1ab/nsp31672I1672SaTcaGc11B.1.36.160.001425
ORF1ab/nsp31672I1672SaTcaGc11B.1.4290.000024
ORF1ab/nsp31672I1672SaTcaGc11B.1.619.10.000641
ORF1ab/nsp31672I1672SaTcaGc11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.