CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1672 & Codon = aCc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31672I1672TI2490TnonsynaTcaCc2322310.995697733-7735

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31672I1672TaTcaCc231232All0.000044
ORF1ab/nsp31672I1672TaTcaCc4040AY.30.000398
ORF1ab/nsp31672I1672TaTcaCc2727B.1.1.70.000024
ORF1ab/nsp31672I1672TaTcaCc2323AY.1030.000143
ORF1ab/nsp31672I1672TaTcaCc1111AY.200.000428
ORF1ab/nsp31672I1672TaTcaCc1111AY.9.20.000404
ORF1ab/nsp31672I1672TaTcaCc1010B.1.617.20.000038
ORF1ab/nsp31672I1672TaTcaCc99B.1.4581
ORF1ab/nsp31672I1672TaTcaCc88AY.390.000198
ORF1ab/nsp31672I1672TaTcaCc77AY.40.000011
ORF1ab/nsp31672I1672TaTcaCc77B.10.000064
ORF1ab/nsp31672I1672TaTcaCc66AY.290.000095
ORF1ab/nsp31672I1672TaTcaCc66AY.46.60.000433
ORF1ab/nsp31672I1672TaTcaCc55AY.840.002187
ORF1ab/nsp31672I1672TaTcaCc55B.1.5260.000118
ORF1ab/nsp31672I1672TaTcaCc44AY.430.000018
ORF1ab/nsp31672I1672TaTcaCc33AY.1000.000138
ORF1ab/nsp31672I1672TaTcaCc33AY.710.001425
ORF1ab/nsp31672I1672TaTcaCc33B.1.1770.00004
ORF1ab/nsp31672I1672TaTcaCc22A.10.000564
ORF1ab/nsp31672I1672TaTcaCc22AY.1040.003968
ORF1ab/nsp31672I1672TaTcaCc22AY.1190.000071
ORF1ab/nsp31672I1672TaTcaCc22AY.120.10.000642
ORF1ab/nsp31672I1672TaTcaCc22AY.230.000139
ORF1ab/nsp31672I1672TaTcaCc22AY.39.10.000079
ORF1ab/nsp31672I1672TaTcaCc22AY.46.40.000329
ORF1ab/nsp31672I1672TaTcaCc22AY.540.000191
ORF1ab/nsp31672I1672TaTcaCc22B.1.10.000036
ORF1ab/nsp31672I1672TaTcaCc22B.1.1.3060.000877
ORF1ab/nsp31672I1672TaTcaCc22B.1.177.200.003035
ORF1ab/nsp31672I1672TaTcaCc11A.20.000662
ORF1ab/nsp31672I1672TaTcaCc11AY.1020.000027
ORF1ab/nsp31672I1672TaTcaCc11AY.1060.000335
ORF1ab/nsp31672I1672TaTcaCc11AY.1070.000466
ORF1ab/nsp31672I1672TaTcaCc11AY.260.000028
ORF1ab/nsp31672I1672TaTcaCc11AY.330.000067
ORF1ab/nsp31672I1672TaTcaCc11AY.4.2.10.000149
ORF1ab/nsp31672I1672TaTcaCc11AY.50.000021
ORF1ab/nsp31672I1672TaTcaCc11AY.60.000041
ORF1ab/nsp31672I1672TaTcaCc11AY.920.000287
ORF1ab/nsp31672I1672TaTcaCc11B0.000128
ORF1ab/nsp31672I1672TaTcaCc11B.1.1600.000031
ORF1ab/nsp31672I1672TaTcaCc11B.1.177.580.001332
ORF1ab/nsp31672I1672TaTcaCc11B.1.177.620.001192
ORF1ab/nsp31672I1672TaTcaCc11B.1.177.790.002342
ORF1ab/nsp31672I1672TaTcaCc11B.1.2400.000216
ORF1ab/nsp31672I1672TaTcaCc11B.1.6230.000536
ORF1ab/nsp31672I1672TaTcaCc11C.1.20.004255
ORF1ab/nsp31672I1672TaTcaCc11P.10.000016
ORF1ab/nsp31672I1672TaTcaCc11P.1.140.000048
ORF1ab/nsp31672I1672TaTcaCc11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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