CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1660

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31660K1660KK2478KsynaaAaaG46046017697-7699
ORF1ab/nsp31660K1660delK2478deldelAAA---11211217697-7699
ORF1ab/nsp31660K1660RK2478RnonsynaAaaGa39360.9230777697-7699
ORF1ab/nsp31660K1660RK2478RnonsynaAAaGG3920.05128217697-7699
ORF1ab/nsp31660K1660RK2478RnonsynAAaCGa3910.0256417697-7699
ORF1ab/nsp31660K1660XK2478XnonsynAaaTaa31300.9677427697-7699
ORF1ab/nsp31660K1660XK2478XnonsynAaATaG3110.03225817697-7699
ORF1ab/nsp31660K1660del1K2478del1delAaa-aa28210.757697-7699
ORF1ab/nsp31660K1660del1K2478del1delaaAaa-2860.2142867697-7699
ORF1ab/nsp31660K1660del1K2478del1delAAa-Na2810.03571437697-7699
ORF1ab/nsp31660K1660NK2478NnonsynaaAaaT18110.6111117697-7699
ORF1ab/nsp31660K1660NK2478NnonsynaaAaaC1870.3888897697-7699
ORF1ab/nsp31660K1660IK2478InonsynaAaaTa1790.5294127697-7699
ORF1ab/nsp31660K1660IK2478InonsynaAAaTC1760.3529417697-7699
ORF1ab/nsp31660K1660IK2478InonsynaAAaTT1720.1176477697-7699
ORF1ab/nsp31660K1660TK2478TnonsynaAaaCa730.4285717697-7699
ORF1ab/nsp31660K1660TK2478TnonsynaAAaCG720.2857147697-7699
ORF1ab/nsp31660K1660TK2478TnonsynaAAaCC710.1428577697-7699
ORF1ab/nsp31660K1660TK2478TnonsynaAAaCT710.1428577697-7699
ORF1ab/nsp31660K1660LK2478LnonsynAAaTTa5517697-7699
ORF1ab/nsp31660K1660del2K2478del2delaAAa--540.87697-7699
ORF1ab/nsp31660K1660del2K2478del2delAAa--a510.27697-7699
ORF1ab/nsp31660K1660MK2478MnonsynaAAaTG2217697-7699
ORF1ab/nsp31660K1660FK2478FnonsynAAATTC2217697-7699
ORF1ab/nsp31660K1660GK2478GnonsynAAaGGa2217697-7699
ORF1ab/nsp31660K1660YK2478YnonsynAaATaC2217697-7699
ORF1ab/nsp31660K1660AK2478AnonsynAAaGCa210.57697-7699
ORF1ab/nsp31660K1660AK2478AnonsynAAAGCT210.57697-7699
ORF1ab/nsp31660K1660QK2478QnonsynAaaCaa1117697-7699
ORF1ab/nsp31660K1660EK2478EnonsynAaaGaa1117697-7699

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31660K1660KaaAaaG460460All0.000088
ORF1ab/nsp31660K1660KaaAaaG228228C.1.20.970213
ORF1ab/nsp31660K1660delAAA---112112All0.000021
ORF1ab/nsp31660K1660KaaAaaG102102B.1.1.70.000091
ORF1ab/nsp31660K1660delAAA---4040B.1.1.70.000036
ORF1ab/nsp31660K1660RaAaaGa3639All0.000007
ORF1ab/nsp31660K1660RaAAaGG239All0
ORF1ab/nsp31660K1660RAAaCGa139All0
ORF1ab/nsp31660K1660KaaAaaG3434C.36.3.10.092391
ORF1ab/nsp31660K1660XAaaTaa3031All0.000006
ORF1ab/nsp31660K1660XAaATaG131All0
ORF1ab/nsp31660K1660del1Aaa-aa2128All0.000004
ORF1ab/nsp31660K1660del1aaAaa-628All0.000001
ORF1ab/nsp31660K1660del1AAa-Na128All0
ORF1ab/nsp31660K1660KaaAaaG2121B.1.10.000381
ORF1ab/nsp31660K1660KaaAaaG1919B.1.214.20.011391
ORF1ab/nsp31660K1660NaaAaaT1118All0.000002
ORF1ab/nsp31660K1660NaaAaaC718All0.000001
ORF1ab/nsp31660K1660IaAaaTa917All0.000002
ORF1ab/nsp31660K1660IaAAaTC617All0.000001
ORF1ab/nsp31660K1660IaAAaTT217All0
ORF1ab/nsp31660K1660del1Aaa-aa1114B.1.1.70.00001
ORF1ab/nsp31660K1660del1aaAaa-314B.1.1.70.000003
ORF1ab/nsp31660K1660KaaAaaG1313AY.40.00002
ORF1ab/nsp31660K1660KaaAaaG88B.1.1.2140.000444
ORF1ab/nsp31660K1660TaAaaCa37All0.000001
ORF1ab/nsp31660K1660TaAAaCG27All0
ORF1ab/nsp31660K1660TaAAaCT17All0
ORF1ab/nsp31660K1660TaAAaCC17All0
ORF1ab/nsp31660K1660XAaaTaa67B.1.1.70.000005
ORF1ab/nsp31660K1660XAaATaG17B.1.1.70.000001
ORF1ab/nsp31660K1660delAAA---660.333333
ORF1ab/nsp31660K1660LAAaTTa55All0.000001
ORF1ab/nsp31660K1660del2aAAa--45All0.000001
ORF1ab/nsp31660K1660del2AAa--a15All0
ORF1ab/nsp31660K1660delAAA---55AY.430.000022
ORF1ab/nsp31660K1660XAaaTaa55B.10.000046
ORF1ab/nsp31660K1660RaAaaGa55B.1.1.70.000004
ORF1ab/nsp31660K1660NaaAaaT35B.1.1.70.000003
ORF1ab/nsp31660K1660NaaAaaC25B.1.1.70.000002
ORF1ab/nsp31660K1660delAAA---55B.1.1770.000066
ORF1ab/nsp31660K1660IaAaaTa240.111111
ORF1ab/nsp31660K1660IaAAaTT240.111111
ORF1ab/nsp31660K1660KaaAaaG44AY.430.000018
ORF1ab/nsp31660K1660KaaAaaG44B.1.1.1570.003653
ORF1ab/nsp31660K1660RaAaaGa44B.1.20.000035
ORF1ab/nsp31660K1660RaAaaGa44P.1.170.000647
ORF1ab/nsp31660K1660delAAA---33AY.40.000005
ORF1ab/nsp31660K1660RaAaaGa33AY.430.000013
ORF1ab/nsp31660K1660del1Aaa-aa33AY.440.000018
ORF1ab/nsp31660K1660delAAA---33B.10.000027
ORF1ab/nsp31660K1660RaAaaGa23B.10.000018
ORF1ab/nsp31660K1660RaAAaGG13B.10.000009
ORF1ab/nsp31660K1660IaAaaTa33B.1.1.70.000003
ORF1ab/nsp31660K1660LAAaTTa33B.1.1.70.000003
ORF1ab/nsp31660K1660delAAA---33B.1.617.20.000011
ORF1ab/nsp31660K1660KaaAaaG33C.10.007177
ORF1ab/nsp31660K1660MaAAaTG220.111111
ORF1ab/nsp31660K1660delAAA---22A0.000774
ORF1ab/nsp31660K1660MaAAaTG22All0
ORF1ab/nsp31660K1660FAAATTC22All0
ORF1ab/nsp31660K1660YAaATaC22All0
ORF1ab/nsp31660K1660GAAaGGa22All0
ORF1ab/nsp31660K1660AAAAGCT12All0
ORF1ab/nsp31660K1660AAAaGCa12All0
ORF1ab/nsp31660K1660RaAaaGa22AY.350.000466
ORF1ab/nsp31660K1660RaAaaGa22AY.40.000003
ORF1ab/nsp31660K1660delAAA---22AY.46.20.001271
ORF1ab/nsp31660K1660KaaAaaG22B.10.000018
ORF1ab/nsp31660K1660TaAAaCC12B.10.000009
ORF1ab/nsp31660K1660TaAAaCG12B.10.000009
ORF1ab/nsp31660K1660del2aAAa--12B.1.1.70.000001
ORF1ab/nsp31660K1660del2AAa--a12B.1.1.70.000001
ORF1ab/nsp31660K1660delAAA---22B.1.2580.000133
ORF1ab/nsp31660K1660RaAaaGa22B.1.4270.000101
ORF1ab/nsp31660K1660RaAaaGa22B.1.617.20.000008
ORF1ab/nsp31660K1660XAaaTaa22B.1.617.20.000008
ORF1ab/nsp31660K1660IaAAaTC22B.1.617.20.000008
ORF1ab/nsp31660K1660KaaAaaG22B.1.617.20.000008
ORF1ab/nsp31660K1660NaaAaaC12B.1.617.20.000004
ORF1ab/nsp31660K1660NaaAaaT12B.1.617.20.000004
ORF1ab/nsp31660K1660KaaAaaG22C.370.000232
ORF1ab/nsp31660K1660NaaAaaT11A.20.000662
ORF1ab/nsp31660K1660RaAaaGa11A.2.40.003367
ORF1ab/nsp31660K1660XAaaTaa11AD.20.000219
ORF1ab/nsp31660K1660QAaaCaa11All0
ORF1ab/nsp31660K1660EAaaGaa11All0
ORF1ab/nsp31660K1660RaAaaGa11AY.1030.000006
ORF1ab/nsp31660K1660TaAaaCa11AY.1110.000183
ORF1ab/nsp31660K1660delAAA---11AY.1110.000183
ORF1ab/nsp31660K1660IaAAaTC11AY.1130.000142
ORF1ab/nsp31660K1660NaaAaaC11AY.1130.000142
ORF1ab/nsp31660K1660KaaAaaG11AY.1200.000037
ORF1ab/nsp31660K1660delAAA---11AY.1200.000037
ORF1ab/nsp31660K1660XAaaTaa11AY.120.10.000321
ORF1ab/nsp31660K1660delAAA---11AY.190.00114
ORF1ab/nsp31660K1660KaaAaaG11AY.230.00007
ORF1ab/nsp31660K1660delAAA---11AY.250.000006
ORF1ab/nsp31660K1660delAAA---11AY.30.00001
ORF1ab/nsp31660K1660RaAaaGa11AY.30.00001
ORF1ab/nsp31660K1660delAAA---11AY.330.000067
ORF1ab/nsp31660K1660RaAaaGa11AY.340.000097
ORF1ab/nsp31660K1660KaaAaaG11AY.360.000148
ORF1ab/nsp31660K1660del1Aaa-aa11AY.40.000002
ORF1ab/nsp31660K1660IaAaaTa11AY.40.000002
ORF1ab/nsp31660K1660del1aaAaa-11AY.4.50.000107
ORF1ab/nsp31660K1660KaaAaaG11AY.440.000006
ORF1ab/nsp31660K1660XAaaTaa11AY.440.000006
ORF1ab/nsp31660K1660FAAATTC11AY.440.000006
ORF1ab/nsp31660K1660YAaATaC11AY.440.000006
ORF1ab/nsp31660K1660NaaAaaC11AY.440.000006
ORF1ab/nsp31660K1660IaAAaTC11AY.440.000006
ORF1ab/nsp31660K1660NaaAaaC11AY.46.60.000072
ORF1ab/nsp31660K1660delAAA---11AY.60.000041
ORF1ab/nsp31660K1660KaaAaaG11AY.610.000105
ORF1ab/nsp31660K1660delAAA---11AY.670.000464
ORF1ab/nsp31660K1660delAAA---11AY.720.001361
ORF1ab/nsp31660K1660delAAA---11AY.810.001992
ORF1ab/nsp31660K1660RaAAaGG11AY.840.000437
ORF1ab/nsp31660K1660TaAAaCG11AY.840.000437
ORF1ab/nsp31660K1660del2aAAa--11AY.90.000068
ORF1ab/nsp31660K1660NaaAaaC11AY.9.20.000037
ORF1ab/nsp31660K1660del1AAa-Na11AY.9.20.000037
ORF1ab/nsp31660K1660IaAAaTC11AY.9.20.000037
ORF1ab/nsp31660K1660delAAA---11AY.990.001049
ORF1ab/nsp31660K1660QAaaCaa11B0.000128
ORF1ab/nsp31660K1660delAAA---11B0.000128
ORF1ab/nsp31660K1660KaaAaaG11B0.000128
ORF1ab/nsp31660K1660del1Aaa-aa11B0.000128
ORF1ab/nsp31660K1660NaaAaaT11B.10.000009
ORF1ab/nsp31660K1660XAaaTaa11B.1.10.000018
ORF1ab/nsp31660K1660delAAA---11B.1.10.000018
ORF1ab/nsp31660K1660KaaAaaG11B.1.1.10.000327
ORF1ab/nsp31660K1660delAAA---11B.1.1.1700.001247
ORF1ab/nsp31660K1660RAAaCGa11B.1.1.2320.001815
ORF1ab/nsp31660K1660delAAA---11B.1.1.2360.006897
ORF1ab/nsp31660K1660RaAaaGa11B.1.1.280.000311
ORF1ab/nsp31660K1660delAAA---11B.1.1.2980.000862
ORF1ab/nsp31660K1660delAAA---11B.1.1.3110.000358
ORF1ab/nsp31660K1660delAAA---11B.1.1.370.000193
ORF1ab/nsp31660K1660XAaaTaa11B.1.1.390.00051
ORF1ab/nsp31660K1660KaaAaaG11B.1.1.4020.011111
ORF1ab/nsp31660K1660XAaaTaa11B.1.1.4330.001425
ORF1ab/nsp31660K1660delAAA---11B.1.1.460.004367
ORF1ab/nsp31660K1660AAAAGCT11B.1.1.70.000001
ORF1ab/nsp31660K1660EAaaGaa11B.1.1.70.000001
ORF1ab/nsp31660K1660TaAaaCa11B.1.1.70.000001
ORF1ab/nsp31660K1660GAAaGGa11B.1.1.70.000001
ORF1ab/nsp31660K1660TaAAaCT11B.1.1570.002985
ORF1ab/nsp31660K1660delAAA---11B.1.1600.000031
ORF1ab/nsp31660K1660RaAaaGa11B.1.1600.000031
ORF1ab/nsp31660K1660NaaAaaT11B.1.1600.000031
ORF1ab/nsp31660K1660KaaAaaG11B.1.1770.000013
ORF1ab/nsp31660K1660XAaaTaa11B.1.1770.000013
ORF1ab/nsp31660K1660RaAaaGa11B.1.177.100.000878
ORF1ab/nsp31660K1660del2aAAa--11B.1.177.110.001698
ORF1ab/nsp31660K1660delAAA---11B.1.177.180.00116
ORF1ab/nsp31660K1660del1aaAaa-11B.1.177.210.000076
ORF1ab/nsp31660K1660XAaaTaa11B.1.177.230.003236
ORF1ab/nsp31660K1660NaaAaaT11B.1.177.40.000211
ORF1ab/nsp31660K1660del1Aaa-aa11B.1.177.520.001757
ORF1ab/nsp31660K1660delAAA---11B.1.177.540.000606
ORF1ab/nsp31660K1660delAAA---11B.1.177.560.000668
ORF1ab/nsp31660K1660del2aAAa--11B.1.177.570.000281
ORF1ab/nsp31660K1660delAAA---11B.1.177.570.000281
ORF1ab/nsp31660K1660delAAA---11B.1.177.60.000977
ORF1ab/nsp31660K1660delAAA---11B.1.177.690.001484
ORF1ab/nsp31660K1660del1aaAaa-11B.1.177.70.000165
ORF1ab/nsp31660K1660XAaaTaa11B.1.177.730.000566
ORF1ab/nsp31660K1660delAAA---11B.1.1790.003759
ORF1ab/nsp31660K1660delAAA---11B.1.20.000009
ORF1ab/nsp31660K1660XAaaTaa11B.1.20.000009
ORF1ab/nsp31660K1660IaAaaTa11B.1.2060.000816
ORF1ab/nsp31660K1660KaaAaaG11B.1.2210.000071
ORF1ab/nsp31660K1660NaaAaaT11B.1.230.006061
ORF1ab/nsp31660K1660TaAaaCa11B.1.2310.032258
ORF1ab/nsp31660K1660delAAA---11B.1.2340.000132
ORF1ab/nsp31660K1660del1Aaa-aa11B.1.2340.000132
ORF1ab/nsp31660K1660NaaAaaT11B.1.258.30.001675
ORF1ab/nsp31660K1660KaaAaaG11B.1.258.70.001912
ORF1ab/nsp31660K1660XAaaTaa11B.1.2800.007143
ORF1ab/nsp31660K1660delAAA---11B.1.3490.000715
ORF1ab/nsp31660K1660del1Aaa-aa11B.1.3510.00003
ORF1ab/nsp31660K1660delAAA---11B.1.360.000146
ORF1ab/nsp31660K1660delAAA---11B.1.36.380.001642
ORF1ab/nsp31660K1660delAAA---11B.1.4090.000781
ORF1ab/nsp31660K1660delAAA---11B.1.416.10.001563
ORF1ab/nsp31660K1660GAAaGGa11B.1.4270.00005
ORF1ab/nsp31660K1660RaAaaGa11B.1.4290.000024
ORF1ab/nsp31660K1660IaAAaTC11B.1.4390.005917
ORF1ab/nsp31660K1660RaAaaGa11B.1.4590.004082
ORF1ab/nsp31660K1660KaaAaaG11B.1.5610.000397
ORF1ab/nsp31660K1660delAAA---11B.1.5610.000397
ORF1ab/nsp31660K1660KaaAaaG11B.1.5760.000907
ORF1ab/nsp31660K1660delAAA---11B.1.5770.000687
ORF1ab/nsp31660K1660delAAA---11B.1.5960.000087
ORF1ab/nsp31660K1660LAAaTTa11B.1.5960.000087
ORF1ab/nsp31660K1660KaaAaaG11B.1.6090.000479
ORF1ab/nsp31660K1660IaAaaTa11B.1.617.10.000129
ORF1ab/nsp31660K1660FAAATTC11B.1.617.20.000004
ORF1ab/nsp31660K1660YAaATaC11B.1.617.20.000004
ORF1ab/nsp31660K1660delAAA---11B.1.6210.000089
ORF1ab/nsp31660K1660NaaAaaT11B.1.6210.000089
ORF1ab/nsp31660K1660KaaAaaG11B.1.6230.000536
ORF1ab/nsp31660K1660KaaAaaG11B.1.6280.000352
ORF1ab/nsp31660K1660XAaaTaa11B.1.80.001972
ORF1ab/nsp31660K1660IaAaaTa11B.1.940.027027
ORF1ab/nsp31660K1660XAaaTaa11B.1.940.027027
ORF1ab/nsp31660K1660LAAaTTa11B.1.940.027027
ORF1ab/nsp31660K1660KaaAaaG11B.400.000364
ORF1ab/nsp31660K1660XAaaTaa11B.60.00091
ORF1ab/nsp31660K1660delAAA---11C.10.002392
ORF1ab/nsp31660K1660XAaaTaa11C.350.000774
ORF1ab/nsp31660K1660del1Aaa-aa11D.20.000075
ORF1ab/nsp31660K1660XAaaTaa11D.20.000075
ORF1ab/nsp31660K1660RaAaaGa11N.50.001767
ORF1ab/nsp31660K1660AAAaGCa11P.10.000016
ORF1ab/nsp31660K1660delAAA---11P.10.000016
ORF1ab/nsp31660K1660XAaaTaa11P.10.000016
ORF1ab/nsp31660K1660KaaAaaG11P.1.10.000318
ORF1ab/nsp31660K1660delAAA---11Q.10.000126
ORF1ab/nsp31660K1660del1Aaa-aa11Q.30.000145