CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 166

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3166S166IS984InonsynaGtaTt9249230.9989183215-3217
ORF1ab/nsp3166S166IS984InonsynaGTaTC92410.001082253215-3217
ORF1ab/nsp3166S166NS984NnonsynaGtaAt75775713215-3217
ORF1ab/nsp3166S166GS984GnonsynAgtGgt5405390.9981483215-3217
ORF1ab/nsp3166S166GS984GnonsynAgTGgC54010.001851853215-3217
ORF1ab/nsp3166S166SS984SsynagTagC1541530.9935063215-3217
ORF1ab/nsp3166S166SS984SsynAGtTCt15410.006493513215-3217
ORF1ab/nsp3166S166delS984deldelAGT---545413215-3217
ORF1ab/nsp3166S166CS984CnonsynAgtTgt141413215-3217
ORF1ab/nsp3166S166RS984RnonsynagTagG1360.4615383215-3217
ORF1ab/nsp3166S166RS984RnonsynagTagA1340.3076923215-3217
ORF1ab/nsp3166S166RS984RnonsynAgtCgt1330.2307693215-3217
ORF1ab/nsp3166S166del1S984del1delaGta-t430.753215-3217
ORF1ab/nsp3166S166TS984TnonsynaGtaCt430.753215-3217
ORF1ab/nsp3166S166TS984TnonsynaGTaCA410.253215-3217
ORF1ab/nsp3166S166del1S984del1delAgt-gt410.253215-3217
ORF1ab/nsp3166S166DS984DnonsynAGtGAt2213215-3217
ORF1ab/nsp3166S166VS984VnonsynAGTGTC210.53215-3217
ORF1ab/nsp3166S166VS984VnonsynAGtGTt210.53215-3217
ORF1ab/nsp3166S166del2S984del2delAGt--t1113215-3217
ORF1ab/nsp3166S166AS984AnonsynAGtGCt1113215-3217

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3166S166IaGtaTt923924All0.000177
ORF1ab/nsp3166S166IaGTaTC1924All0
ORF1ab/nsp3166S166NaGtaAt757757All0.000145
ORF1ab/nsp3166S166GAgtGgt539540All0.000103
ORF1ab/nsp3166S166GAgTGgC1540All0
ORF1ab/nsp3166S166IaGtaTt395395B.1.438.10.042368
ORF1ab/nsp3166S166NaGtaAt282282B.1.1.70.000252
ORF1ab/nsp3166S166NaGtaAt215215AY.1030.001335
ORF1ab/nsp3166S166IaGtaTt202202B.1.20.001779
ORF1ab/nsp3166S166SagTagC153154All0.000029
ORF1ab/nsp3166S166SAGtTCt1154All0
ORF1ab/nsp3166S166NaGtaAt137137B.1.617.20.000516
ORF1ab/nsp3166S166GAgtGgt9595B.1.1.70.000085
ORF1ab/nsp3166S166GAgtGgt7272C.160.076352
ORF1ab/nsp3166S166GAgtGgt6363B.1.2230.175
ORF1ab/nsp3166S166SagTagC6262B.1.1.70.000056
ORF1ab/nsp3166S166IaGtaTt5555AY.40.000086
ORF1ab/nsp3166S166delAGT---5454All0.00001
ORF1ab/nsp3166S166IaGtaTt5151AY.430.000226
ORF1ab/nsp3166S166IaGtaTt4040AY.250.000241
ORF1ab/nsp3166S166GAgtGgt3535B.1.20.000308
ORF1ab/nsp3166S166GAgtGgt2929AY.40.000045
ORF1ab/nsp3166S166GAgtGgt2929AY.9.20.001065
ORF1ab/nsp3166S166GAgtGgt2626AY.230.001813
ORF1ab/nsp3166S166IaGtaTt2626B.1.1.70.000023
ORF1ab/nsp3166S166IaGtaTt2525B.1.6151
ORF1ab/nsp3166S166NaGtaAt2323AY.440.00014
ORF1ab/nsp3166S166GAgtGgt2121AY.610.0022
ORF1ab/nsp3166S166GAgtGgt1919C.360.017304
ORF1ab/nsp3166S166NaGtaAt1818AY.390.000445
ORF1ab/nsp3166S166SagTagC1717B.1.160.310.137097
ORF1ab/nsp3166S166CAgtTgt1414All0.000003
ORF1ab/nsp3166S166RagTagG613All0.000001
ORF1ab/nsp3166S166RagTagA413All0.000001
ORF1ab/nsp3166S166RAgtCgt313All0.000001
ORF1ab/nsp3166S166GAgtGgt1313B.1.617.20.000049
ORF1ab/nsp3166S166SagTagC1212B.1.5170.005124
ORF1ab/nsp3166S166IaGtaTt1111B.1.10.0002
ORF1ab/nsp3166S166IaGtaTt1111B.1.617.20.000041
ORF1ab/nsp3166S166IaGtaTt99AY.420.000362
ORF1ab/nsp3166S166delAGT---99B.1.1.70.000008
ORF1ab/nsp3166S166CAgtTgt99B.1.1.70.000008
ORF1ab/nsp3166S166SagTagC99B.1.20.000079
ORF1ab/nsp3166S166GAgtGgt99P.10.000142
ORF1ab/nsp3166S166NaGtaAt88AY.540.000763
ORF1ab/nsp3166S166GAgtGgt88B.10.000073
ORF1ab/nsp3166S166NaGtaAt77AY.330.000467
ORF1ab/nsp3166S166NaGtaAt77AY.40.000011
ORF1ab/nsp3166S166SagTagC77AY.40.000011
ORF1ab/nsp3166S166NaGtaAt77AY.430.000031
ORF1ab/nsp3166S166GAgtGgt77AY.440.000043
ORF1ab/nsp3166S166IaGtaTt77B.10.000064
ORF1ab/nsp3166S166GAgtGgt77P.1.150.001626
ORF1ab/nsp3166S166GAgtGgt66AY.250.000036
ORF1ab/nsp3166S166GAgtGgt66AY.470.000187
ORF1ab/nsp3166S166IaGtaTt55AY.1020.000133
ORF1ab/nsp3166S166GAgtGgt55AY.1200.000186
ORF1ab/nsp3166S166GAgtGgt55AY.330.000334
ORF1ab/nsp3166S166GAgtGgt55AY.4.20.000108
ORF1ab/nsp3166S166GAgtGgt55AY.430.000022
ORF1ab/nsp3166S166IaGtaTt55AY.440.00003
ORF1ab/nsp3166S166delAGT---55B.10.000046
ORF1ab/nsp3166S166SagTagC55B.10.000046
ORF1ab/nsp3166S166IaGtaTt55B.1.2210.000355
ORF1ab/nsp3166S166TaGtaCt34All0.000001
ORF1ab/nsp3166S166del1aGta-t34All0.000001
ORF1ab/nsp3166S166del1Agt-gt14All0
ORF1ab/nsp3166S166TaGTaCA14All0
ORF1ab/nsp3166S166IaGtaTt44AY.1030.000025
ORF1ab/nsp3166S166IaGtaTt44AY.330.000267
ORF1ab/nsp3166S166SagTagC34AY.440.000018
ORF1ab/nsp3166S166SAGtTCt14AY.440.000006
ORF1ab/nsp3166S166delAGT---44B.1.1.3480.003185
ORF1ab/nsp3166S166SagTagC44B.1.5260.000094
ORF1ab/nsp3166S166SagTagC44B.1.617.20.000015
ORF1ab/nsp3166S166RagTagG24B.1.617.20.000008
ORF1ab/nsp3166S166RagTagA24B.1.617.20.000008
ORF1ab/nsp3166S166NaGtaAt44C.370.000464
ORF1ab/nsp3166S166IaGtaTt44P.10.000063
ORF1ab/nsp3166S166IaGtaTt33AY.1170.000254
ORF1ab/nsp3166S166NaGtaAt33AY.29.10.000662
ORF1ab/nsp3166S166GAgtGgt33AY.340.000291
ORF1ab/nsp3166S166GAgtGgt33AY.390.000074
ORF1ab/nsp3166S166delAGT---33AY.40.000005
ORF1ab/nsp3166S166NaGtaAt33AY.470.000093
ORF1ab/nsp3166S166IaGtaTt33AY.610.000314
ORF1ab/nsp3166S166NaGtaAt33AY.910.002191
ORF1ab/nsp3166S166GAgtGgt33AY.980.000237
ORF1ab/nsp3166S166NaGtaAt33B.10.000027
ORF1ab/nsp3166S166NaGtaAt33B.1.1.3170.001235
ORF1ab/nsp3166S166delAGT---33B.1.1.330.001263
ORF1ab/nsp3166S166GAgtGgt33B.1.1.3750.035714
ORF1ab/nsp3166S166SagTagC33B.1.1.700.001023
ORF1ab/nsp3166S166GAgtGgt33B.1.1600.000094
ORF1ab/nsp3166S166NaGtaAt33B.1.177.770.002179
ORF1ab/nsp3166S166NaGtaAt33B.1.20.000026
ORF1ab/nsp3166S166SagTagC33B.1.5750.00091
ORF1ab/nsp3166S166GAgtGgt33B.1.5850.083333
ORF1ab/nsp3166S166IaGtaTt33C.370.000348
ORF1ab/nsp3166S166SagTagC33D.20.000225
ORF1ab/nsp3166S166IaGtaTt33D.20.000225
ORF1ab/nsp3166S166IaGtaTt33P.1.140.000143
ORF1ab/nsp3166S166DAGtGAt22All0
ORF1ab/nsp3166S166VAGtGTt12All0
ORF1ab/nsp3166S166VAGTGTC12All0
ORF1ab/nsp3166S166IaGtaTt22AY.1000.000092
ORF1ab/nsp3166S166GAgtGgt22AY.1020.000053
ORF1ab/nsp3166S166IaGtaTt22AY.1110.000366
ORF1ab/nsp3166S166IaGtaTt22AY.140.000176
ORF1ab/nsp3166S166IaGtaTt22AY.230.000139
ORF1ab/nsp3166S166NaGtaAt22AY.260.000057
ORF1ab/nsp3166S166SagTagC22AY.290.000032
ORF1ab/nsp3166S166IaGtaTt22AY.290.000032
ORF1ab/nsp3166S166SagTagC22AY.30.00002
ORF1ab/nsp3166S166NaGtaAt22AY.30.00002
ORF1ab/nsp3166S166IaGtaTt22AY.39.10.000079
ORF1ab/nsp3166S166RagTagG22AY.40.000003
ORF1ab/nsp3166S166delAGT---22AY.440.000012
ORF1ab/nsp3166S166IaGtaTt22AY.470.000062
ORF1ab/nsp3166S166GAgtGgt22AY.540.000191
ORF1ab/nsp3166S166IaGtaTt22AY.60.000082
ORF1ab/nsp3166S166GAgtGgt22AY.60.000082
ORF1ab/nsp3166S166GAgtGgt22AY.75.10.000361
ORF1ab/nsp3166S166GAgtGgt22AY.920.000575
ORF1ab/nsp3166S166TaGtaCt22B.10.000018
ORF1ab/nsp3166S166GAgtGgt22B.1.1.280.000622
ORF1ab/nsp3166S166IaGtaTt22B.1.1.3110.000716
ORF1ab/nsp3166S166GAgtGgt22B.1.1.3170.000823
ORF1ab/nsp3166S166GAgtGgt22B.1.1.3720.001377
ORF1ab/nsp3166S166IaGtaTt22B.1.1.390.001019
ORF1ab/nsp3166S166GAgtGgt22B.1.1.5260.007092
ORF1ab/nsp3166S166delAGT---22B.1.3510.000059
ORF1ab/nsp3166S166IaGtaTt22B.1.360.000292
ORF1ab/nsp3166S166NaGtaAt22B.1.4240.016129
ORF1ab/nsp3166S166IaGtaTt22B.1.4270.000101
ORF1ab/nsp3166S166IaGtaTt22B.1.4290.000047
ORF1ab/nsp3166S166GAgtGgt22B.1.5250.000226
ORF1ab/nsp3166S166GAgtGgt22B.1.5260.000047
ORF1ab/nsp3166S166CAgtTgt22B.1.6090.000959
ORF1ab/nsp3166S166GAgtGgt22B.1.6210.000177
ORF1ab/nsp3166S166VAGtGTt12B.290.003509
ORF1ab/nsp3166S166VAGTGTC12B.290.003509
ORF1ab/nsp3166S166GAgTGgC12B.290.003509
ORF1ab/nsp3166S166IaGTaTC12B.290.003509
ORF1ab/nsp3166S166GAgtGgt12B.290.003509
ORF1ab/nsp3166S166IaGtaTt12B.290.003509
ORF1ab/nsp3166S166GAgtGgt22C.370.000232
ORF1ab/nsp3166S166delAGT---22N.60.014184
ORF1ab/nsp3166S166NaGtaAt22P.10.000032
ORF1ab/nsp3166S166IaGtaTt11A0.000387
ORF1ab/nsp3166S166IaGtaTt11A.2.5.10.004808
ORF1ab/nsp3166S166RAgtCgt11A.60.005128
ORF1ab/nsp3166S166AAGtGCt11All0
ORF1ab/nsp3166S166del2AGt--t11All0
ORF1ab/nsp3166S166GAgtGgt11AY.1000.000046
ORF1ab/nsp3166S166NaGtaAt11AY.1000.000046
ORF1ab/nsp3166S166NaGtaAt11AY.1020.000027
ORF1ab/nsp3166S166RagTagA11AY.1020.000027
ORF1ab/nsp3166S166SagTagC11AY.1020.000027
ORF1ab/nsp3166S166GAgtGgt11AY.1030.000006
ORF1ab/nsp3166S166delAGT---11AY.1030.000006
ORF1ab/nsp3166S166SagTagC11AY.1030.000006
ORF1ab/nsp3166S166delAGT---11AY.1080.001103
ORF1ab/nsp3166S166GAgtGgt11AY.1170.000085
ORF1ab/nsp3166S166NaGtaAt11AY.1170.000085
ORF1ab/nsp3166S166GAgtGgt11AY.1180.000063
ORF1ab/nsp3166S166RAgtCgt11AY.1190.000035
ORF1ab/nsp3166S166NaGtaAt11AY.1200.000037
ORF1ab/nsp3166S166delAGT---11AY.1200.000037
ORF1ab/nsp3166S166GAgtGgt11AY.140.000088
ORF1ab/nsp3166S166NaGtaAt11AY.16.10.00047
ORF1ab/nsp3166S166GAgtGgt11AY.200.000039
ORF1ab/nsp3166S166delAGT---11AY.200.000039
ORF1ab/nsp3166S166NaGtaAt11AY.200.000039
ORF1ab/nsp3166S166SagTagC11AY.250.000006
ORF1ab/nsp3166S166GAgtGgt11AY.260.000028
ORF1ab/nsp3166S166SagTagC11AY.260.000028
ORF1ab/nsp3166S166NaGtaAt11AY.290.000016
ORF1ab/nsp3166S166GAgtGgt11AY.30.00001
ORF1ab/nsp3166S166IaGtaTt11AY.3.10.000085
ORF1ab/nsp3166S166IaGtaTt11AY.380.000499
ORF1ab/nsp3166S166SagTagC11AY.390.000025
ORF1ab/nsp3166S166NaGtaAt11AY.4.2.10.000149
ORF1ab/nsp3166S166IaGtaTt11AY.460.000104
ORF1ab/nsp3166S166IaGtaTt11AY.46.20.000635
ORF1ab/nsp3166S166delAGT---11AY.46.20.000635
ORF1ab/nsp3166S166SagTagC11AY.50.000021
ORF1ab/nsp3166S166CAgtTgt11AY.50.000021
ORF1ab/nsp3166S166delAGT---11AY.50.000021
ORF1ab/nsp3166S166GAgtGgt11AY.50.000021
ORF1ab/nsp3166S166IaGtaTt11AY.50.000021
ORF1ab/nsp3166S166GAgtGgt11AY.5.30.000337
ORF1ab/nsp3166S166SagTagC11AY.520.000814
ORF1ab/nsp3166S166delAGT---11AY.610.000105
ORF1ab/nsp3166S166delAGT---11AY.650.000533
ORF1ab/nsp3166S166delAGT---11AY.660.00107
ORF1ab/nsp3166S166GAgtGgt11AY.730.000665
ORF1ab/nsp3166S166NaGtaAt11AY.750.000056
ORF1ab/nsp3166S166SagTagC11AY.750.000056
ORF1ab/nsp3166S166delAGT---11AY.75.10.00018
ORF1ab/nsp3166S166IaGtaTt11AY.850.000427
ORF1ab/nsp3166S166delAGT---11AY.90.000068
ORF1ab/nsp3166S166NaGtaAt11AY.90.000068
ORF1ab/nsp3166S166GAgtGgt11AY.90.000068
ORF1ab/nsp3166S166IaGtaTt11AY.9.20.000037
ORF1ab/nsp3166S166NaGtaAt11AY.900.000684
ORF1ab/nsp3166S166NaGtaAt11AY.950.000761
ORF1ab/nsp3166S166GAgtGgt11AY.98.10.000048
ORF1ab/nsp3166S166NaGtaAt11AY.99.20.000092
ORF1ab/nsp3166S166NaGtaAt11B0.000128
ORF1ab/nsp3166S166RagTagG11B.10.000009
ORF1ab/nsp3166S166del2AGt--t11B.10.000009
ORF1ab/nsp3166S166AAGtGCt11B.10.000009
ORF1ab/nsp3166S166del1aGta-t11B.10.000009
ORF1ab/nsp3166S166del1aGta-t11B.1.10.000018
ORF1ab/nsp3166S166NaGtaAt11B.1.10.000018
ORF1ab/nsp3166S166SagTagC11B.1.10.000018
ORF1ab/nsp3166S166delAGT---11B.1.10.000018
ORF1ab/nsp3166S166GAgtGgt11B.1.1.10.000327
ORF1ab/nsp3166S166RagTagG11B.1.1.10.000327
ORF1ab/nsp3166S166IaGtaTt11B.1.1.10.000327
ORF1ab/nsp3166S166IaGtaTt11B.1.1.100.001115
ORF1ab/nsp3166S166IaGtaTt11B.1.1.2280.003049
ORF1ab/nsp3166S166IaGtaTt11B.1.1.2740.005051
ORF1ab/nsp3166S166delAGT---11B.1.1.2840.000107
ORF1ab/nsp3166S166IaGtaTt11B.1.1.370.000193
ORF1ab/nsp3166S166del1Agt-gt11B.1.1.70.000001
ORF1ab/nsp3166S166RagTagA11B.1.1.70.000001
ORF1ab/nsp3166S166IaGtaTt11B.1.1600.000031
ORF1ab/nsp3166S166RAgtCgt11B.1.1600.000031
ORF1ab/nsp3166S166delAGT---11B.1.160.80.001289
ORF1ab/nsp3166S166IaGtaTt11B.1.1770.000013
ORF1ab/nsp3166S166SagTagC11B.1.1770.000013
ORF1ab/nsp3166S166GAgtGgt11B.1.1770.000013
ORF1ab/nsp3166S166delAGT---11B.1.177.210.000076
ORF1ab/nsp3166S166TaGtaCt11B.1.177.570.000281
ORF1ab/nsp3166S166delAGT---11B.1.177.80.000752
ORF1ab/nsp3166S166GAgtGgt11B.1.177.810.000189
ORF1ab/nsp3166S166delAGT---11B.1.177.830.001481
ORF1ab/nsp3166S166DAGtGAt11B.1.20.000009
ORF1ab/nsp3166S166CAgtTgt11B.1.20.000009
ORF1ab/nsp3166S166GAgtGgt11B.1.2060.000816
ORF1ab/nsp3166S166GAgtGgt11B.1.214.20.0006
ORF1ab/nsp3166S166IaGtaTt11B.1.2320.000537
ORF1ab/nsp3166S166GAgtGgt11B.1.2320.000537
ORF1ab/nsp3166S166NaGtaAt11B.1.2360.002053
ORF1ab/nsp3166S166NaGtaAt11B.1.3510.00003
ORF1ab/nsp3166S166SagTagC11B.1.3510.00003
ORF1ab/nsp3166S166SagTagC11B.1.3960.000706
ORF1ab/nsp3166S166GAgtGgt11B.1.3990.001934
ORF1ab/nsp3166S166GAgtGgt11B.1.4090.000781
ORF1ab/nsp3166S166GAgtGgt11B.1.4270.00005
ORF1ab/nsp3166S166delAGT---11B.1.4290.000024
ORF1ab/nsp3166S166GAgtGgt11B.1.5090.000866
ORF1ab/nsp3166S166NaGtaAt11B.1.5250.000113
ORF1ab/nsp3166S166GAgtGgt11B.1.5330.009615
ORF1ab/nsp3166S166IaGtaTt11B.1.5380.008065
ORF1ab/nsp3166S166IaGtaTt11B.1.5400.009709
ORF1ab/nsp3166S166GAgtGgt11B.1.5410.004425
ORF1ab/nsp3166S166CAgtTgt11B.1.5610.000397
ORF1ab/nsp3166S166IaGtaTt11B.1.5960.000087
ORF1ab/nsp3166S166GAgtGgt11B.1.5960.000087
ORF1ab/nsp3166S166del1aGta-t11B.1.617.20.000004
ORF1ab/nsp3166S166TaGTaCA11B.1.617.20.000004
ORF1ab/nsp3166S166delAGT---11B.1.617.20.000004
ORF1ab/nsp3166S166IaGtaTt11B.1.6210.000089
ORF1ab/nsp3166S166NaGtaAt11B.1.910.002075
ORF1ab/nsp3166S166SagTagC11B.290.003509
ORF1ab/nsp3166S166IaGtaTt11B.310.003731
ORF1ab/nsp3166S166delAGT---11B.340.013699
ORF1ab/nsp3166S166GAgtGgt11C.10.002392
ORF1ab/nsp3166S166delAGT---11C.170.055556
ORF1ab/nsp3166S166SagTagC11C.320.023256
ORF1ab/nsp3166S166NaGtaAt11D.20.000075
ORF1ab/nsp3166S166DAGtGAt11D.20.000075
ORF1ab/nsp3166S166GAgtGgt11D.20.000075
ORF1ab/nsp3166S166SagTagC11P.10.000016
ORF1ab/nsp3166S166GAgtGgt11P.20.000187
ORF1ab/nsp3166S166SagTagC11Q.10.000126
ORF1ab/nsp3166S166delAGT---11Q.80.000165
ORF1ab/nsp3166S166SagTagC11Q.80.000165
ORF1ab/nsp3166S166delAGT---11R.10.00009
ORF1ab/nsp3166S166delAGT---11U.20.008772