CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 166 | S166I | S984I | nonsyn | aGt | aTt | 924 | 923 | 0.998918 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166I | S984I | nonsyn | aGT | aTC | 924 | 1 | 0.00108225 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166N | S984N | nonsyn | aGt | aAt | 757 | 757 | 1 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166G | S984G | nonsyn | Agt | Ggt | 540 | 539 | 0.998148 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166G | S984G | nonsyn | AgT | GgC | 540 | 1 | 0.00185185 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166S | S984S | syn | agT | agC | 154 | 153 | 0.993506 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166S | S984S | syn | AGt | TCt | 154 | 1 | 0.00649351 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166del | S984del | del | AGT | --- | 54 | 54 | 1 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166C | S984C | nonsyn | Agt | Tgt | 14 | 14 | 1 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166R | S984R | nonsyn | agT | agG | 13 | 6 | 0.461538 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166R | S984R | nonsyn | agT | agA | 13 | 4 | 0.307692 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166R | S984R | nonsyn | Agt | Cgt | 13 | 3 | 0.230769 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166del1 | S984del1 | del | aGt | a-t | 4 | 3 | 0.75 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166T | S984T | nonsyn | aGt | aCt | 4 | 3 | 0.75 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166T | S984T | nonsyn | aGT | aCA | 4 | 1 | 0.25 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166del1 | S984del1 | del | Agt | -gt | 4 | 1 | 0.25 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166D | S984D | nonsyn | AGt | GAt | 2 | 2 | 1 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166V | S984V | nonsyn | AGT | GTC | 2 | 1 | 0.5 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166V | S984V | nonsyn | AGt | GTt | 2 | 1 | 0.5 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166del2 | S984del2 | del | AGt | --t | 1 | 1 | 1 | 3215-3217 |
ORF1ab/nsp3 | 166 | S166A | S984A | nonsyn | AGt | GCt | 1 | 1 | 1 | 3215-3217 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 923 | 924 | All | 0.000177 |
ORF1ab/nsp3 | 166 | S166I | aGT | aTC | 1 | 924 | All | 0 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 757 | 757 | All | 0.000145 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 539 | 540 | All | 0.000103 |
ORF1ab/nsp3 | 166 | S166G | AgT | GgC | 1 | 540 | All | 0 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 395 | 395 | B.1.438.1 | 0.042368 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 282 | 282 | B.1.1.7 | 0.000252 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 215 | 215 | AY.103 | 0.001335 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 202 | 202 | B.1.2 | 0.001779 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 153 | 154 | All | 0.000029 |
ORF1ab/nsp3 | 166 | S166S | AGt | TCt | 1 | 154 | All | 0 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 137 | 137 | B.1.617.2 | 0.000516 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 95 | 95 | B.1.1.7 | 0.000085 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 72 | 72 | C.16 | 0.076352 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 63 | 63 | B.1.223 | 0.175 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 62 | 62 | B.1.1.7 | 0.000056 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 55 | 55 | AY.4 | 0.000086 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 54 | 54 | All | 0.00001 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 51 | 51 | AY.43 | 0.000226 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 40 | 40 | AY.25 | 0.000241 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 29 | 29 | AY.9.2 | 0.001065 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 26 | 26 | AY.23 | 0.001813 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 25 | 25 | B.1.615 | 1 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 21 | 21 | AY.61 | 0.0022 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 19 | 19 | C.36 | 0.017304 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 18 | 18 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 17 | 17 | B.1.160.31 | 0.137097 |
ORF1ab/nsp3 | 166 | S166C | Agt | Tgt | 14 | 14 | All | 0.000003 |
ORF1ab/nsp3 | 166 | S166R | agT | agG | 6 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 166 | S166R | agT | agA | 4 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 166 | S166R | Agt | Cgt | 3 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 12 | 12 | B.1.517 | 0.005124 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 9 | 9 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 166 | S166C | Agt | Tgt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 8 | 8 | AY.54 | 0.000763 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 166 | S166T | aGt | aCt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 166 | S166del1 | aGt | a-t | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 166 | S166del1 | Agt | -gt | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 166 | S166T | aGT | aCA | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 166 | S166S | AGt | TCt | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 166 | S166R | agT | agG | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 166 | S166R | agT | agA | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 3 | 3 | B.1.1.375 | 0.035714 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 3 | 3 | B.1.585 | 0.083333 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 166 | S166D | AGt | GAt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 166 | S166V | AGt | GTt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 166 | S166V | AGT | GTC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 166 | S166R | agT | agG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 166 | S166T | aGt | aCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 166 | S166C | Agt | Tgt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 166 | S166V | AGt | GTt | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166V | AGT | GTC | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166G | AgT | GgC | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166I | aGT | aTC | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 2 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 166 | S166R | Agt | Cgt | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 166 | S166A | AGt | GCt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 166 | S166del2 | AGt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 166 | S166R | agT | agA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 166 | S166R | Agt | Cgt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 166 | S166C | Agt | Tgt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 166 | S166R | agT | agG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 166 | S166del2 | AGt | --t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 166 | S166A | AGt | GCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 166 | S166del1 | aGt | a-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 166 | S166del1 | aGt | a-t | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 166 | S166R | agT | agG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 166 | S166del1 | Agt | -gt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 166 | S166R | agT | agA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 166 | S166R | Agt | Cgt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 166 | S166T | aGt | aCt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 166 | S166D | AGt | GAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 166 | S166C | Agt | Tgt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 166 | S166C | Agt | Tgt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 166 | S166del1 | aGt | a-t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 166 | S166T | aGT | aCA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 166 | S166I | aGt | aTt | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp3 | 166 | S166N | aGt | aAt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 166 | S166D | AGt | GAt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 166 | S166G | Agt | Ggt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 166 | S166S | agT | agC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 166 | S166del | AGT | --- | 1 | 1 | U.2 | 0.008772 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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