CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1652

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31652A1652AA2470AsyngcGgcT929271310.7674347673-7675
ORF1ab/nsp31652A1652AA2470AsyngcGgcC929216880.1816627673-7675
ORF1ab/nsp31652A1652AA2470AsyngcGgcA92924730.0509047673-7675
ORF1ab/nsp31652A1652delA2470deldelGCG---10310317673-7675
ORF1ab/nsp31652A1652SA2470SnonsynGcgTcg97930.9587637673-7675
ORF1ab/nsp31652A1652SA2470SnonsynGcGTcT9730.03092787673-7675
ORF1ab/nsp31652A1652SA2470SnonsynGcGTcA9710.01030937673-7675
ORF1ab/nsp31652A1652VA2470VnonsyngCggTg53490.9245287673-7675
ORF1ab/nsp31652A1652VA2470VnonsyngCGgTT5340.07547177673-7675
ORF1ab/nsp31652A1652EA2470EnonsyngCggAg101017673-7675
ORF1ab/nsp31652A1652del1A2470del1delgcGgc-850.6257673-7675
ORF1ab/nsp31652A1652del1A2470del1delgCgg-g820.257673-7675
ORF1ab/nsp31652A1652del1A2470del1delGcg-cg810.1257673-7675
ORF1ab/nsp31652A1652LA2470LnonsynGCgTTg540.87673-7675
ORF1ab/nsp31652A1652PA2470PnonsynGcgCcg540.87673-7675
ORF1ab/nsp31652A1652GA2470GnonsyngCggGg530.67673-7675
ORF1ab/nsp31652A1652GA2470GnonsyngCGgGT510.27673-7675
ORF1ab/nsp31652A1652GA2470GnonsyngCGgGA510.27673-7675
ORF1ab/nsp31652A1652LA2470LnonsynGCGTTA510.27673-7675
ORF1ab/nsp31652A1652PA2470PnonsynGcGCcC510.27673-7675
ORF1ab/nsp31652A1652del2A2470del2delGCg--g4417673-7675
ORF1ab/nsp31652A1652TA2470TnonsynGcgAcg430.757673-7675
ORF1ab/nsp31652A1652TA2470TnonsynGcGAcA410.257673-7675
ORF1ab/nsp31652A1652WA2470WnonsynGCgTGg2217673-7675
ORF1ab/nsp31652A1652MA2470MnonsynGCgATg2217673-7675
ORF1ab/nsp31652A1652FA2470FnonsynGCGTTT2217673-7675
ORF1ab/nsp31652A1652CA2470CnonsynGCGTGT1117673-7675
ORF1ab/nsp31652A1652XA2470XnonsynGCGTGA1117673-7675

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31652A1652AgcGgcT71319292All0.001364
ORF1ab/nsp31652A1652AgcGgcC16889292All0.000323
ORF1ab/nsp31652A1652AgcGgcA4739292All0.00009
ORF1ab/nsp31652A1652AgcGgcT13801534B.1.1.70.001235
ORF1ab/nsp31652A1652AgcGgcC1071534B.1.1.70.000096
ORF1ab/nsp31652A1652AgcGgcA471534B.1.1.70.000042
ORF1ab/nsp31652A1652AgcGgcC10391041B.1.5880.945405
ORF1ab/nsp31652A1652AgcGgcT21041B.1.5880.00182
ORF1ab/nsp31652A1652AgcGgcT953953AY.9.20.035003
ORF1ab/nsp31652A1652AgcGgcT717730AY.40.001116
ORF1ab/nsp31652A1652AgcGgcA8730AY.40.000012
ORF1ab/nsp31652A1652AgcGgcC5730AY.40.000008
ORF1ab/nsp31652A1652AgcGgcT433438AY.250.002604
ORF1ab/nsp31652A1652AgcGgcA3438AY.250.000018
ORF1ab/nsp31652A1652AgcGgcC2438AY.250.000012
ORF1ab/nsp31652A1652AgcGgcT203393B.1.617.20.000764
ORF1ab/nsp31652A1652AgcGgcC188393B.1.617.20.000708
ORF1ab/nsp31652A1652AgcGgcA2393B.1.617.20.000008
ORF1ab/nsp31652A1652AgcGgcA315334AY.470.009798
ORF1ab/nsp31652A1652AgcGgcT19334AY.470.000591
ORF1ab/nsp31652A1652AgcGgcT306310AY.430.001356
ORF1ab/nsp31652A1652AgcGgcA2310AY.430.000009
ORF1ab/nsp31652A1652AgcGgcC2310AY.430.000009
ORF1ab/nsp31652A1652AgcGgcT234262B.1.20.00206
ORF1ab/nsp31652A1652AgcGgcC23262B.1.20.000203
ORF1ab/nsp31652A1652AgcGgcA5262B.1.20.000044
ORF1ab/nsp31652A1652AgcGgcT202202B.1.36.350.526042
ORF1ab/nsp31652A1652AgcGgcC79157B.10.000724
ORF1ab/nsp31652A1652AgcGgcT75157B.10.000687
ORF1ab/nsp31652A1652AgcGgcA3157B.10.000027
ORF1ab/nsp31652A1652AgcGgcT140146P.10.002206
ORF1ab/nsp31652A1652AgcGgcA6146P.10.000095
ORF1ab/nsp31652A1652AgcGgcT125135AY.440.000761
ORF1ab/nsp31652A1652AgcGgcC5135AY.440.00003
ORF1ab/nsp31652A1652AgcGgcA5135AY.440.00003
ORF1ab/nsp31652A1652AgcGgcT126126B.1.6320.845638
ORF1ab/nsp31652A1652AgcGgcT125125B.1.3620.192604
ORF1ab/nsp31652A1652AgcGgcT107108B.1.4290.002518
ORF1ab/nsp31652A1652AgcGgcA1108B.1.4290.000024
ORF1ab/nsp31652A1652delGCG---103103All0.00002
ORF1ab/nsp31652A1652AgcGgcT98103AY.1030.000608
ORF1ab/nsp31652A1652AgcGgcA4103AY.1030.000025
ORF1ab/nsp31652A1652AgcGgcC1103AY.1030.000006
ORF1ab/nsp31652A1652AgcGgcT101101B.1.10.001832
ORF1ab/nsp31652A1652SGcgTcg9397All0.000018
ORF1ab/nsp31652A1652SGcGTcT397All0.000001
ORF1ab/nsp31652A1652SGcGTcA197All0
ORF1ab/nsp31652A1652AgcGgcC8195AY.1000.003727
ORF1ab/nsp31652A1652AgcGgcT1495AY.1000.000644
ORF1ab/nsp31652A1652AgcGgcT8487AY.98.10.004068
ORF1ab/nsp31652A1652AgcGgcA387AY.98.10.000145
ORF1ab/nsp31652A1652AgcGgcT8383AY.1190.002931
ORF1ab/nsp31652A1652AgcGgcT7482AY.46.10.075975
ORF1ab/nsp31652A1652AgcGgcC882AY.46.10.008214
ORF1ab/nsp31652A1652AgcGgcT4072AY.50.000826
ORF1ab/nsp31652A1652AgcGgcC3172AY.50.00064
ORF1ab/nsp31652A1652AgcGgcA172AY.50.000021
ORF1ab/nsp31652A1652AgcGgcT7071AY.1020.001856
ORF1ab/nsp31652A1652AgcGgcC171AY.1020.000027
ORF1ab/nsp31652A1652AgcGgcT6464AY.90.004326
ORF1ab/nsp31652A1652AgcGgcT6464B.1.2210.004546
ORF1ab/nsp31652A1652AgcGgcC5164B.1.5950.013309
ORF1ab/nsp31652A1652AgcGgcT1364B.1.5950.003392
ORF1ab/nsp31652A1652AgcGgcT5758AY.420.002293
ORF1ab/nsp31652A1652AgcGgcA158AY.420.00004
ORF1ab/nsp31652A1652AgcGgcT5454B.1.5250.006111
ORF1ab/nsp31652A1652VgCggTg4953All0.000009
ORF1ab/nsp31652A1652VgCGgTT453All0.000001
ORF1ab/nsp31652A1652delGCG---5050B.1.1.70.000045
ORF1ab/nsp31652A1652AgcGgcT4344AY.30.000428
ORF1ab/nsp31652A1652AgcGgcA144AY.30.00001
ORF1ab/nsp31652A1652AgcGgcT4344B.1.1.2140.002385
ORF1ab/nsp31652A1652AgcGgcC144B.1.1.2140.000055
ORF1ab/nsp31652A1652AgcGgcT4143AY.390.001013
ORF1ab/nsp31652A1652AgcGgcA143AY.390.000025
ORF1ab/nsp31652A1652AgcGgcC143AY.390.000025
ORF1ab/nsp31652A1652AgcGgcT2643B.1.1770.000342
ORF1ab/nsp31652A1652AgcGgcA1643B.1.1770.000211
ORF1ab/nsp31652A1652AgcGgcC143B.1.1770.000013
ORF1ab/nsp31652A1652AgcGgcT4040B.1.2580.002662
ORF1ab/nsp31652A1652AgcGgcT3939B.1.36.10.04447
ORF1ab/nsp31652A1652AgcGgcT3438B.1.3510.001011
ORF1ab/nsp31652A1652AgcGgcA338B.1.3510.000089
ORF1ab/nsp31652A1652AgcGgcC138B.1.3510.00003
ORF1ab/nsp31652A1652SGcgTcg3333AY.40.000051
ORF1ab/nsp31652A1652AgcGgcT3232AY.260.000906
ORF1ab/nsp31652A1652AgcGgcT2930B.1.1600.000904
ORF1ab/nsp31652A1652AgcGgcA130B.1.1600.000031
ORF1ab/nsp31652A1652AgcGgcT2929AY.330.001937
ORF1ab/nsp31652A1652AgcGgcT2527AY.4.20.000542
ORF1ab/nsp31652A1652AgcGgcA227AY.4.20.000043
ORF1ab/nsp31652A1652AgcGgcC2626B.1.588.11
ORF1ab/nsp31652A1652AgcGgcT2325AY.200.000894
ORF1ab/nsp31652A1652AgcGgcC125AY.200.000039
ORF1ab/nsp31652A1652AgcGgcA125AY.200.000039
ORF1ab/nsp31652A1652AgcGgcT2424B.1.5260.000564
ORF1ab/nsp31652A1652AgcGgcT2222AY.350.005127
ORF1ab/nsp31652A1652AgcGgcT2121C.370.002437
ORF1ab/nsp31652A1652AgcGgcT1718B.1.177.70.002803
ORF1ab/nsp31652A1652AgcGgcC118B.1.177.70.000165
ORF1ab/nsp31652A1652AgcGgcT1616AY.1060.005358
ORF1ab/nsp31652A1652AgcGgcT1616AY.46.60.001155
ORF1ab/nsp31652A1652AgcGgcT1416P.20.002613
ORF1ab/nsp31652A1652AgcGgcA216P.20.000373
ORF1ab/nsp31652A1652AgcGgcT1215AY.60.000494
ORF1ab/nsp31652A1652AgcGgcA315AY.60.000123
ORF1ab/nsp31652A1652VgCggTg1215B.1.1.70.000011
ORF1ab/nsp31652A1652VgCGgTT315B.1.1.70.000003
ORF1ab/nsp31652A1652AgcGgcT1315B.1.360.001897
ORF1ab/nsp31652A1652AgcGgcA215B.1.360.000292
ORF1ab/nsp31652A1652AgcGgcT1313AY.290.000205
ORF1ab/nsp31652A1652AgcGgcT913B.1.1.5190.000357
ORF1ab/nsp31652A1652AgcGgcC213B.1.1.5190.000079
ORF1ab/nsp31652A1652AgcGgcA213B.1.1.5190.000079
ORF1ab/nsp31652A1652AgcGgcT1212B.1.1.4330.017094
ORF1ab/nsp31652A1652AgcGgcT1212B.1.2430.000835
ORF1ab/nsp31652A1652AgcGgcT1212P.1.140.000574
ORF1ab/nsp31652A1652AgcGgcT1111AY.1180.000689
ORF1ab/nsp31652A1652AgcGgcT1111AY.4.50.001182
ORF1ab/nsp31652A1652AgcGgcT1111AY.690.002053
ORF1ab/nsp31652A1652AgcGgcT1111AY.850.004699
ORF1ab/nsp31652A1652AgcGgcT1111B.1.88.10.052885
ORF1ab/nsp31652A1652EgCggAg1010All0.000002
ORF1ab/nsp31652A1652AgcGgcT1010B.1.6210.000885
ORF1ab/nsp31652A1652AgcGgcT1010R.10.0009
ORF1ab/nsp31652A1652AgcGgcT99AY.1210.001218
ORF1ab/nsp31652A1652AgcGgcT89AY.460.000833
ORF1ab/nsp31652A1652AgcGgcA19AY.460.000104
ORF1ab/nsp31652A1652AgcGgcT99B.1.177.80.006772
ORF1ab/nsp31652A1652AgcGgcT99B.1.36.220.01087
ORF1ab/nsp31652A1652AgcGgcT99B.1.5090.007792
ORF1ab/nsp31652A1652AgcGgcC99B.1.5670.03
ORF1ab/nsp31652A1652del1gcGgc-58All0.000001
ORF1ab/nsp31652A1652del1gCgg-g28All0
ORF1ab/nsp31652A1652del1Gcg-cg18All0
ORF1ab/nsp31652A1652SGcgTcg88AY.250.000048
ORF1ab/nsp31652A1652AgcGgcT88AY.300.003166
ORF1ab/nsp31652A1652AgcGgcA48AY.360.000593
ORF1ab/nsp31652A1652AgcGgcT48AY.360.000593
ORF1ab/nsp31652A1652AgcGgcT58AY.610.000524
ORF1ab/nsp31652A1652AgcGgcC38AY.610.000314
ORF1ab/nsp31652A1652AgcGgcT88AY.99.20.000737
ORF1ab/nsp31652A1652AgcGgcT88B.1.1.10.002614
ORF1ab/nsp31652A1652AgcGgcT88B.1.1.330.003367
ORF1ab/nsp31652A1652AgcGgcT88B.1.22.10.25
ORF1ab/nsp31652A1652AgcGgcT67AY.230.000418
ORF1ab/nsp31652A1652AgcGgcA17AY.230.00007
ORF1ab/nsp31652A1652VgCggTg77AY.590.003708
ORF1ab/nsp31652A1652AgcGgcT77AY.7.20.003915
ORF1ab/nsp31652A1652AgcGgcT67B.1.1.2220.001224
ORF1ab/nsp31652A1652AgcGgcC17B.1.1.2220.000204
ORF1ab/nsp31652A1652SGcgTcg77B.1.20.000062
ORF1ab/nsp31652A1652AgcGgcT77B.1.3250.048276
ORF1ab/nsp31652A1652AgcGgcT77B.1.4260.007064
ORF1ab/nsp31652A1652AgcGgcT66AY.1110.001099
ORF1ab/nsp31652A1652AgcGgcT46AY.1130.00057
ORF1ab/nsp31652A1652AgcGgcA26AY.1130.000285
ORF1ab/nsp31652A1652AgcGgcT56AY.1160.001434
ORF1ab/nsp31652A1652AgcGgcA16AY.1160.000287
ORF1ab/nsp31652A1652AgcGgcT46AY.1170.000338
ORF1ab/nsp31652A1652AgcGgcC26AY.1170.000169
ORF1ab/nsp31652A1652AgcGgcT56AY.140.00044
ORF1ab/nsp31652A1652AgcGgcA16AY.140.000088
ORF1ab/nsp31652A1652SGcgTcg66AY.340.000582
ORF1ab/nsp31652A1652SGcgTcg46B.10.000037
ORF1ab/nsp31652A1652SGcGTcT16B.10.000009
ORF1ab/nsp31652A1652SGcGTcA16B.10.000009
ORF1ab/nsp31652A1652AgcGgcT66B.1.1.1330.050847
ORF1ab/nsp31652A1652AgcGgcT66B.1.1.280.001867
ORF1ab/nsp31652A1652AgcGgcT66B.1.177.330.009868
ORF1ab/nsp31652A1652PGcgCcg45All0.000001
ORF1ab/nsp31652A1652LGCgTTg45All0.000001
ORF1ab/nsp31652A1652GgCggGg35All0.000001
ORF1ab/nsp31652A1652PGcGCcC15All0
ORF1ab/nsp31652A1652GgCGgGA15All0
ORF1ab/nsp31652A1652GgCGgGT15All0
ORF1ab/nsp31652A1652LGCGTTA15All0
ORF1ab/nsp31652A1652AgcGgcT55AY.1200.000186
ORF1ab/nsp31652A1652SGcgTcg55AY.200.000194
ORF1ab/nsp31652A1652AgcGgcT55AY.340.000485
ORF1ab/nsp31652A1652AgcGgcT55AY.4.40.002046
ORF1ab/nsp31652A1652AgcGgcT55AY.7.10.000564
ORF1ab/nsp31652A1652AgcGgcT45AY.750.000224
ORF1ab/nsp31652A1652AgcGgcA15AY.750.000056
ORF1ab/nsp31652A1652VgCggTg55B.10.000046
ORF1ab/nsp31652A1652AgcGgcT55B.1.1.2840.000537
ORF1ab/nsp31652A1652delGCG---55B.1.1770.000066
ORF1ab/nsp31652A1652AgcGgcT55B.1.3110.001373
ORF1ab/nsp31652A1652AgcGgcT55B.1.36.290.002587
ORF1ab/nsp31652A1652AgcGgcT35B.1.5960.000261
ORF1ab/nsp31652A1652AgcGgcC25B.1.5960.000174
ORF1ab/nsp31652A1652SGcgTcg55D.20.000375
ORF1ab/nsp31652A1652del2GCg--g44All0.000001
ORF1ab/nsp31652A1652TGcgAcg34All0.000001
ORF1ab/nsp31652A1652TGcGAcA14All0
ORF1ab/nsp31652A1652AgcGgcT24AY.130.000322
ORF1ab/nsp31652A1652AgcGgcA24AY.130.000322
ORF1ab/nsp31652A1652AgcGgcT34AY.39.10.000119
ORF1ab/nsp31652A1652AgcGgcA14AY.39.10.00004
ORF1ab/nsp31652A1652delGCG---44AY.40.000006
ORF1ab/nsp31652A1652SGcgTcg44AY.50.000083
ORF1ab/nsp31652A1652AgcGgcT44AY.5.40.001107
ORF1ab/nsp31652A1652AgcGgcC34AY.550.002752
ORF1ab/nsp31652A1652AgcGgcA14AY.550.000917
ORF1ab/nsp31652A1652AgcGgcT44AY.740.000463
ORF1ab/nsp31652A1652AgcGgcT44AY.9.10.000335
ORF1ab/nsp31652A1652AgcGgcT44AY.920.001149
ORF1ab/nsp31652A1652delGCG---44B.10.000037
ORF1ab/nsp31652A1652GgCggGg24B.10.000018
ORF1ab/nsp31652A1652GgCGgGT14B.10.000009
ORF1ab/nsp31652A1652GgCGgGA14B.10.000009
ORF1ab/nsp31652A1652AgcGgcT44B.1.1.2610.034483
ORF1ab/nsp31652A1652AgcGgcT44B.1.3200.004981
ORF1ab/nsp31652A1652AgcGgcT34B.1.4270.000151
ORF1ab/nsp31652A1652AgcGgcC14B.1.4270.00005
ORF1ab/nsp31652A1652AgcGgcT44B.1.440.033333
ORF1ab/nsp31652A1652AgcGgcT44B.1.617.10.000516
ORF1ab/nsp31652A1652AgcGgcT44B.390.009324
ORF1ab/nsp31652A1652AgcGgcT44B.60.00364
ORF1ab/nsp31652A1652AgcGgcT44C.360.003643
ORF1ab/nsp31652A1652AgcGgcT33A0.001161
ORF1ab/nsp31652A1652AgcGgcT33A.2.50.001497
ORF1ab/nsp31652A1652AgcGgcT23A.23.10.001408
ORF1ab/nsp31652A1652AgcGgcC13A.23.10.000704
ORF1ab/nsp31652A1652SGcgTcg33AY.1030.000019
ORF1ab/nsp31652A1652AgcGgcT33AY.450.000365
ORF1ab/nsp31652A1652AgcGgcT33AY.5.30.001012
ORF1ab/nsp31652A1652AgcGgcT33AY.540.000286
ORF1ab/nsp31652A1652AgcGgcT23AY.75.10.000361
ORF1ab/nsp31652A1652AgcGgcC13AY.75.10.00018
ORF1ab/nsp31652A1652AgcGgcA33AY.760.014493
ORF1ab/nsp31652A1652PGcgCcg33B.10.000027
ORF1ab/nsp31652A1652EgCggAg33B.10.000027
ORF1ab/nsp31652A1652VgCggTg33B.1.10.000054
ORF1ab/nsp31652A1652AgcGgcT33B.1.1.3120.005736
ORF1ab/nsp31652A1652AgcGgcT33B.1.1.500.002037
ORF1ab/nsp31652A1652SGcgTcg23B.1.1.70.000002
ORF1ab/nsp31652A1652SGcGTcT13B.1.1.70.000001
ORF1ab/nsp31652A1652AgcGgcT33B.1.177.520.005272
ORF1ab/nsp31652A1652AgcGgcT33B.1.2400.000647
ORF1ab/nsp31652A1652AgcGgcT23B.1.2650.002541
ORF1ab/nsp31652A1652AgcGgcA13B.1.2650.001271
ORF1ab/nsp31652A1652AgcGgcT33B.1.36.260.008571
ORF1ab/nsp31652A1652AgcGgcT33B.1.4160.003807
ORF1ab/nsp31652A1652AgcGgcT33B.1.4990.003151
ORF1ab/nsp31652A1652delGCG---33B.1.617.20.000011
ORF1ab/nsp31652A1652AgcGgcT33B.1.6230.001609
ORF1ab/nsp31652A1652AgcGgcT33N.50.0053
ORF1ab/nsp31652A1652AgcGgcT33P.1.120.001452
ORF1ab/nsp31652A1652AgcGgcA220.111111
ORF1ab/nsp31652A1652VgCggTg220.111111
ORF1ab/nsp31652A1652EgCggAg220.111111
ORF1ab/nsp31652A1652AgcGgcT22AD.20.000438
ORF1ab/nsp31652A1652FGCGTTT22All0
ORF1ab/nsp31652A1652WGCgTGg22All0
ORF1ab/nsp31652A1652MGCgATg22All0
ORF1ab/nsp31652A1652AgcGgcT22AY.1100.000225
ORF1ab/nsp31652A1652AgcGgcT22AY.1140.000462
ORF1ab/nsp31652A1652delGCG---22AY.250.000012
ORF1ab/nsp31652A1652AgcGgcT22AY.3.10.000171
ORF1ab/nsp31652A1652AgcGgcA22AY.4.10.001475
ORF1ab/nsp31652A1652AgcGgcT22AY.4.2.10.000298
ORF1ab/nsp31652A1652delGCG---22AY.46.20.001271
ORF1ab/nsp31652A1652AgcGgcT22AY.46.50.000397
ORF1ab/nsp31652A1652AgcGgcT22AY.590.001059
ORF1ab/nsp31652A1652VgCggTg22AY.670.000929
ORF1ab/nsp31652A1652AgcGgcT22AY.680.000547
ORF1ab/nsp31652A1652AgcGgcT22AY.80.001212
ORF1ab/nsp31652A1652AgcGgcT22AY.910.001461
ORF1ab/nsp31652A1652AgcGgcC12AY.980.000079
ORF1ab/nsp31652A1652AgcGgcT12AY.980.000079
ORF1ab/nsp31652A1652AgcGgcT12B0.000128
ORF1ab/nsp31652A1652AgcGgcC12B0.000128
ORF1ab/nsp31652A1652WGCgTGg22B.10.000018
ORF1ab/nsp31652A1652del1gcGgc-22B.10.000018
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.1530.002191
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.2040.006079
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.2160.001781
ORF1ab/nsp31652A1652SGcgTcg22B.1.1.2770.001517
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.3060.000877
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.3180.000604
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.3720.001377
ORF1ab/nsp31652A1652AgcGgcT22B.1.1.5210.010695
ORF1ab/nsp31652A1652AgcGgcA22B.1.1.540.006042
ORF1ab/nsp31652A1652AgcGgcT22B.1.1280.001271
ORF1ab/nsp31652A1652AgcGgcT22B.1.177.350.001382
ORF1ab/nsp31652A1652delGCG---22B.1.177.560.001335
ORF1ab/nsp31652A1652AgcGgcT22B.1.214.30.014286
ORF1ab/nsp31652A1652AgcGgcT22B.1.3770.009132
ORF1ab/nsp31652A1652AgcGgcT22B.1.3960.001411
ORF1ab/nsp31652A1652AgcGgcT22B.1.6090.000959
ORF1ab/nsp31652A1652AgcGgcT22B.1.621.10.001012
ORF1ab/nsp31652A1652AgcGgcT22B.1.6250.004706
ORF1ab/nsp31652A1652AgcGgcA22B.1.6310.006734
ORF1ab/nsp31652A1652AgcGgcT22B.1.6370.000146
ORF1ab/nsp31652A1652AgcGgcC22B.4.10.037736
ORF1ab/nsp31652A1652AgcGgcT22C.160.002121
ORF1ab/nsp31652A1652AgcGgcT22D.20.00015
ORF1ab/nsp31652A1652VgCggTg12P.10.000016
ORF1ab/nsp31652A1652SGcgTcg12P.10.000016
ORF1ab/nsp31652A1652VgCGgTT12P.10.000016
ORF1ab/nsp31652A1652SGcGTcT12P.10.000016
ORF1ab/nsp31652A1652AgcGgcT22P.1.100.000539
ORF1ab/nsp31652A1652del1gcGgc-22P.1.140.000096
ORF1ab/nsp31652A1652AgcGgcT22P.1.170.000324
ORF1ab/nsp31652A1652AgcGgcT22P.1.70.000639
ORF1ab/nsp31652A1652AgcGgcT22Q.30.00029
ORF1ab/nsp31652A1652AgcGgcT22Y.10.025641
ORF1ab/nsp31652A1652delGCG---11A0.000387
ORF1ab/nsp31652A1652SGcgTcg11A.2.20.001689
ORF1ab/nsp31652A1652AgcGgcT11A.2.20.001689
ORF1ab/nsp31652A1652AgcGgcT11AE.20.058824
ORF1ab/nsp31652A1652CGCGTGT11All0
ORF1ab/nsp31652A1652XGCGTGA11All0
ORF1ab/nsp31652A1652AgcGgcC11AU.30.00211
ORF1ab/nsp31652A1652AgcGgcT11AW.10.003049
ORF1ab/nsp31652A1652AgcGgcT11AY.100.00053
ORF1ab/nsp31652A1652AgcGgcT11AY.1010.00049
ORF1ab/nsp31652A1652SGcgTcg11AY.1020.000027
ORF1ab/nsp31652A1652EgCggAg11AY.1030.000006
ORF1ab/nsp31652A1652AgcGgcT11AY.1040.001984
ORF1ab/nsp31652A1652AgcGgcT11AY.1070.000466
ORF1ab/nsp31652A1652AgcGgcT11AY.1080.001103
ORF1ab/nsp31652A1652delGCG---11AY.1110.000183
ORF1ab/nsp31652A1652AgcGgcC11AY.116.10.000311
ORF1ab/nsp31652A1652VgCggTg11AY.1180.000063
ORF1ab/nsp31652A1652SGcgTcg11AY.1200.000037
ORF1ab/nsp31652A1652delGCG---11AY.1200.000037
ORF1ab/nsp31652A1652SGcgTcg11AY.120.20.001285
ORF1ab/nsp31652A1652AgcGgcT11AY.160.00038
ORF1ab/nsp31652A1652AgcGgcT11AY.16.10.00047
ORF1ab/nsp31652A1652delGCG---11AY.190.00114
ORF1ab/nsp31652A1652AgcGgcT11AY.240.000431
ORF1ab/nsp31652A1652AgcGgcT11AY.270.000065
ORF1ab/nsp31652A1652VgCggTg11AY.30.00001
ORF1ab/nsp31652A1652AgcGgcT11AY.310.018519
ORF1ab/nsp31652A1652delGCG---11AY.330.000067
ORF1ab/nsp31652A1652AgcGgcT11AY.370.000316
ORF1ab/nsp31652A1652del2GCg--g11AY.40.000002
ORF1ab/nsp31652A1652del1gCgg-g11AY.40.000002
ORF1ab/nsp31652A1652delGCG---11AY.4.50.000107
ORF1ab/nsp31652A1652SGcgTcg11AY.430.000004
ORF1ab/nsp31652A1652MGCgATg11AY.430.000004
ORF1ab/nsp31652A1652SGcgTcg11AY.440.000006
ORF1ab/nsp31652A1652TGcgAcg11AY.440.000006
ORF1ab/nsp31652A1652AgcGgcT11AY.46.30.000934
ORF1ab/nsp31652A1652AgcGgcT11AY.510.000909
ORF1ab/nsp31652A1652AgcGgcA11AY.520.000814
ORF1ab/nsp31652A1652TGcgAcg11AY.550.000917
ORF1ab/nsp31652A1652delGCG---11AY.60.000041
ORF1ab/nsp31652A1652AgcGgcT11AY.70.000196
ORF1ab/nsp31652A1652AgcGgcT11AY.700.000209
ORF1ab/nsp31652A1652VgCggTg11AY.710.000475
ORF1ab/nsp31652A1652delGCG---11AY.720.001361
ORF1ab/nsp31652A1652AgcGgcT11AY.720.001361
ORF1ab/nsp31652A1652AgcGgcT11AY.780.001541
ORF1ab/nsp31652A1652del1gcGgc-11AY.790.001211
ORF1ab/nsp31652A1652AgcGgcT11AY.840.000437
ORF1ab/nsp31652A1652AgcGgcT11AY.860.00083
ORF1ab/nsp31652A1652AgcGgcT11AY.870.000833
ORF1ab/nsp31652A1652VgCggTg11AY.940.000443
ORF1ab/nsp31652A1652AgcGgcT11AY.950.000761
ORF1ab/nsp31652A1652VgCggTg11AY.950.000761
ORF1ab/nsp31652A1652PGcgCcg11B0.000128
ORF1ab/nsp31652A1652CGCGTGT11B.10.000009
ORF1ab/nsp31652A1652XGCGTGA11B.10.000009
ORF1ab/nsp31652A1652PGcGCcC11B.1.10.000018
ORF1ab/nsp31652A1652EgCggAg11B.1.10.000018
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.100.001115
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.1480.008772
ORF1ab/nsp31652A1652delGCG---11B.1.1.1700.001247
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.1810.004545
ORF1ab/nsp31652A1652delGCG---11B.1.1.2360.006897
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.2550.00303
ORF1ab/nsp31652A1652AgcGgcA11B.1.1.3010.001179
ORF1ab/nsp31652A1652delGCG---11B.1.1.3110.000358
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.3110.000358
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.3160.000925
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.3170.000412
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.3540.004386
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.370.000193
ORF1ab/nsp31652A1652SGcgTcg11B.1.1.370.000193
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.3970.002252
ORF1ab/nsp31652A1652LGCgTTg11B.1.1.4090.002833
ORF1ab/nsp31652A1652VgCggTg11B.1.1.4090.002833
ORF1ab/nsp31652A1652SGcgTcg11B.1.1.4090.002833
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.4200.001006
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.4340.000349
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.4370.010417
ORF1ab/nsp31652A1652delGCG---11B.1.1.460.004367
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.4610.012048
ORF1ab/nsp31652A1652TGcgAcg11B.1.1.50.008333
ORF1ab/nsp31652A1652LGCgTTg11B.1.1.70.000001
ORF1ab/nsp31652A1652del1Gcg-cg11B.1.1.70.000001
ORF1ab/nsp31652A1652FGCGTTT11B.1.1.70.000001
ORF1ab/nsp31652A1652AgcGgcT11B.1.1.860.035714
ORF1ab/nsp31652A1652AgcGgcT11B.1.110.30.000718
ORF1ab/nsp31652A1652VgCggTg11B.1.1600.000031
ORF1ab/nsp31652A1652delGCG---11B.1.1600.000031
ORF1ab/nsp31652A1652delGCG---11B.1.1610.017241
ORF1ab/nsp31652A1652del2GCg--g11B.1.1770.000013
ORF1ab/nsp31652A1652VgCggTg11B.1.1770.000013
ORF1ab/nsp31652A1652SGcgTcg11B.1.177.100.000878
ORF1ab/nsp31652A1652delGCG---11B.1.177.180.00116
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.180.00116
ORF1ab/nsp31652A1652SGcgTcg11B.1.177.210.000076
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.40.000211
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.420.000894
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.460.000918
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.50.001242
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.510.004566
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.530.002392
ORF1ab/nsp31652A1652delGCG---11B.1.177.540.000606
ORF1ab/nsp31652A1652del2GCg--g11B.1.177.540.000606
ORF1ab/nsp31652A1652delGCG---11B.1.177.570.000281
ORF1ab/nsp31652A1652delGCG---11B.1.177.60.000977
ORF1ab/nsp31652A1652delGCG---11B.1.177.690.001484
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.820.000477
ORF1ab/nsp31652A1652AgcGgcT11B.1.177.860.000183
ORF1ab/nsp31652A1652AgcGgcT11B.1.1950.005025
ORF1ab/nsp31652A1652MGCgATg11B.1.20.000009
ORF1ab/nsp31652A1652VgCggTg11B.1.20.000009
ORF1ab/nsp31652A1652EgCggAg11B.1.20.000009
ORF1ab/nsp31652A1652LGCgTTg11B.1.20.000009
ORF1ab/nsp31652A1652AgcGgcT11B.1.2100.002132
ORF1ab/nsp31652A1652AgcGgcT11B.1.2140.003663
ORF1ab/nsp31652A1652AgcGgcT11B.1.214.20.0006
ORF1ab/nsp31652A1652delGCG---11B.1.221.10.002907
ORF1ab/nsp31652A1652AgcGgcT11B.1.2340.000132
ORF1ab/nsp31652A1652AgcGgcT11B.1.2350.002519
ORF1ab/nsp31652A1652AgcGgcT11B.1.2390.001221
ORF1ab/nsp31652A1652VgCggTg11B.1.2430.00007
ORF1ab/nsp31652A1652delGCG---11B.1.2580.000067
ORF1ab/nsp31652A1652AgcGgcT11B.1.258.140.00098
ORF1ab/nsp31652A1652AgcGgcT11B.1.258.170.000104
ORF1ab/nsp31652A1652AgcGgcT11B.1.258.220.002667
ORF1ab/nsp31652A1652delGCG---11B.1.258.30.001675
ORF1ab/nsp31652A1652AgcGgcT11B.1.2700.005618
ORF1ab/nsp31652A1652AgcGgcT11B.1.3040.023256
ORF1ab/nsp31652A1652AgcGgcT11B.1.3190.003049
ORF1ab/nsp31652A1652AgcGgcA11B.1.3490.000715
ORF1ab/nsp31652A1652delGCG---11B.1.360.000146
ORF1ab/nsp31652A1652AgcGgcT11B.1.36.160.001425
ORF1ab/nsp31652A1652AgcGgcT11B.1.36.170.000494
ORF1ab/nsp31652A1652AgcGgcT11B.1.36.180.00042
ORF1ab/nsp31652A1652delGCG---11B.1.36.380.001642
ORF1ab/nsp31652A1652AgcGgcT11B.1.36.80.001
ORF1ab/nsp31652A1652AgcGgcT11B.1.3610.001289
ORF1ab/nsp31652A1652VgCggTg11B.1.3690.000285
ORF1ab/nsp31652A1652AgcGgcT11B.1.3890.001002
ORF1ab/nsp31652A1652VgCggTg11B.1.3910.001127
ORF1ab/nsp31652A1652VgCggTg11B.1.3960.000706
ORF1ab/nsp31652A1652AgcGgcT11B.1.4000.000429
ORF1ab/nsp31652A1652SGcgTcg11B.1.4000.000429
ORF1ab/nsp31652A1652AgcGgcT11B.1.4030.003268
ORF1ab/nsp31652A1652SGcgTcg11B.1.4290.000024
ORF1ab/nsp31652A1652EgCggAg11B.1.4290.000024
ORF1ab/nsp31652A1652AgcGgcT11B.1.466.20.000391
ORF1ab/nsp31652A1652AgcGgcT11B.1.4680.005714
ORF1ab/nsp31652A1652AgcGgcT11B.1.4700.001404
ORF1ab/nsp31652A1652AgcGgcT11B.1.4730.019231
ORF1ab/nsp31652A1652AgcGgcT11B.1.4790.038462
ORF1ab/nsp31652A1652AgcGgcT11B.1.4970.000315
ORF1ab/nsp31652A1652AgcGgcT11B.1.5170.000427
ORF1ab/nsp31652A1652AgcGgcT11B.1.5510.00129
ORF1ab/nsp31652A1652AgcGgcA11B.1.5540.004405
ORF1ab/nsp31652A1652delGCG---11B.1.5610.000397
ORF1ab/nsp31652A1652AgcGgcT11B.1.5610.000397
ORF1ab/nsp31652A1652VgCggTg11B.1.5770.000687
ORF1ab/nsp31652A1652LGCGTTA11B.1.5770.000687
ORF1ab/nsp31652A1652GgCggGg11B.1.5770.000687
ORF1ab/nsp31652A1652AgcGgcT11B.1.5770.000687
ORF1ab/nsp31652A1652delGCG---11B.1.5770.000687
ORF1ab/nsp31652A1652AgcGgcT11B.1.5810.009434
ORF1ab/nsp31652A1652VgCggTg11B.1.5810.009434
ORF1ab/nsp31652A1652AgcGgcC11B.1.5820.000491
ORF1ab/nsp31652A1652EgCggAg11B.1.5820.000491
ORF1ab/nsp31652A1652AgcGgcT11B.1.5970.00463
ORF1ab/nsp31652A1652VgCggTg11B.1.617.20.000004
ORF1ab/nsp31652A1652SGcgTcg11B.1.617.20.000004
ORF1ab/nsp31652A1652AgcGgcT11B.1.6200.000946
ORF1ab/nsp31652A1652delGCG---11B.1.6210.000089
ORF1ab/nsp31652A1652AgcGgcT11B.1.6280.000352
ORF1ab/nsp31652A1652AgcGgcT11B.1.840.020833
ORF1ab/nsp31652A1652AgcGgcT11B.1.90.006173
ORF1ab/nsp31652A1652AgcGgcT11B.1.940.027027
ORF1ab/nsp31652A1652del1gCgg-g11B.30.000831
ORF1ab/nsp31652A1652AgcGgcA11B.30.000831
ORF1ab/nsp31652A1652AgcGgcA11C.350.000774
ORF1ab/nsp31652A1652delGCG---11C.360.000911
ORF1ab/nsp31652A1652AgcGgcT11C.36.3.10.002717
ORF1ab/nsp31652A1652AgcGgcT11C.37.10.002618
ORF1ab/nsp31652A1652VgCggTg11D.20.000075
ORF1ab/nsp31652A1652AgcGgcT11D.30.005917
ORF1ab/nsp31652A1652AgcGgcT11L.30.003546
ORF1ab/nsp31652A1652delGCG---11P.10.000016
ORF1ab/nsp31652A1652TGcGAcA11P.10.000016
ORF1ab/nsp31652A1652LGCgTTg11P.10.000016
ORF1ab/nsp31652A1652FGCGTTT11P.10.000016
ORF1ab/nsp31652A1652AgcGgcT11P.1.10.000318
ORF1ab/nsp31652A1652delGCG---11P.1.100.000269
ORF1ab/nsp31652A1652AgcGgcT11P.1.160.000374
ORF1ab/nsp31652A1652AgcGgcC11P.1.40.000977
ORF1ab/nsp31652A1652AgcGgcT11P.50.013699
ORF1ab/nsp31652A1652delGCG---11Q.10.000126
ORF1ab/nsp31652A1652del2GCg--g11Q.40.000455
ORF1ab/nsp31652A1652AgcGgcT11Q.80.000165