CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 165

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3165D165GD983GnonsyngAtgGt132413230.9992453212-3214
ORF1ab/nsp3165D165GD983GnonsyngATgGG132410.0007552873212-3214
ORF1ab/nsp3165D165DD983DsyngaTgaC15315313212-3214
ORF1ab/nsp3165D165YD983YnonsynGatTat12412413212-3214
ORF1ab/nsp3165D165ND983NnonsynGatAat11911913212-3214
ORF1ab/nsp3165D165AD983AnonsyngAtgCt999913212-3214
ORF1ab/nsp3165D165delD983deldelGAT---505013212-3214
ORF1ab/nsp3165D165ED983EnonsyngaTgaG20120.63212-3214
ORF1ab/nsp3165D165ED983EnonsyngaTgaA2080.43212-3214
ORF1ab/nsp3165D165VD983VnonsyngAtgTt11100.9090913212-3214
ORF1ab/nsp3165D165VD983VnonsyngATgTA1110.09090913212-3214
ORF1ab/nsp3165D165HD983HnonsynGatCat4413212-3214
ORF1ab/nsp3165D165del1D983del1delGat-at2213212-3214
ORF1ab/nsp3165D165ID983InonsynGATATA210.53212-3214
ORF1ab/nsp3165D165ID983InonsynGAtATt210.53212-3214
ORF1ab/nsp3165D165del2D983del2delGATA--1113212-3214
ORF1ab/nsp3165D165KD983KnonsynGaTAaA1113212-3214
ORF1ab/nsp3165D165LD983LnonsynGAtCTt1113212-3214

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3165D165GgAtgGt13231324All0.000253
ORF1ab/nsp3165D165GgATgGG11324All0
ORF1ab/nsp3165D165GgAtgGt391391B.1.177.300.982412
ORF1ab/nsp3165D165GgAtgGt176176AY.40.000274
ORF1ab/nsp3165D165DgaTgaC153153All0.000029
ORF1ab/nsp3165D165YGatTat124124All0.000024
ORF1ab/nsp3165D165GgAtgGt124124AY.1030.00077
ORF1ab/nsp3165D165NGatAat119119All0.000023
ORF1ab/nsp3165D165GgAtgGt113113B.1.177.90.150466
ORF1ab/nsp3165D165GgAtgGt102102AY.250.000614
ORF1ab/nsp3165D165YGatTat101101B.1.1.70.00009
ORF1ab/nsp3165D165AgAtgCt9999All0.000019
ORF1ab/nsp3165D165GgAtgGt7575B.1.1.70.000067
ORF1ab/nsp3165D165GgAtgGt5252B.1.20.000458
ORF1ab/nsp3165D165delGAT---5050All0.00001
ORF1ab/nsp3165D165NGatAat4545B.1.2580.002995
ORF1ab/nsp3165D165AgAtgCt3434AY.4.40.013912
ORF1ab/nsp3165D165GgAtgGt3434B.1.36.250.075055
ORF1ab/nsp3165D165NGatAat2929AY.130.004668
ORF1ab/nsp3165D165DgaTgaC2626AY.40.00004
ORF1ab/nsp3165D165GgAtgGt2424B.10.00022
ORF1ab/nsp3165D165GgAtgGt2223B.1.617.20.000083
ORF1ab/nsp3165D165GgATgGG123B.1.617.20.000004
ORF1ab/nsp3165D165NGatAat2121B.1.1770.000277
ORF1ab/nsp3165D165EgaTgaG1220All0.000002
ORF1ab/nsp3165D165EgaTgaA820All0.000002
ORF1ab/nsp3165D165GgAtgGt2020AY.9.10.001674
ORF1ab/nsp3165D165DgaTgaC2020B.1.4290.000471
ORF1ab/nsp3165D165AgAtgCt1818AY.40.000028
ORF1ab/nsp3165D165GgAtgGt1616AY.30.000159
ORF1ab/nsp3165D165GgAtgGt1616B.1.5260.000376
ORF1ab/nsp3165D165GgAtgGt1414AY.46.60.001011
ORF1ab/nsp3165D165GgAtgGt1414B.1.4270.000707
ORF1ab/nsp3165D165DgaTgaC1313B.1.617.20.000049
ORF1ab/nsp3165D165VgAtgTt1011All0.000002
ORF1ab/nsp3165D165VgATgTA111All0
ORF1ab/nsp3165D165DgaTgaC1111AY.420.000443
ORF1ab/nsp3165D165GgAtgGt1010AY.430.000044
ORF1ab/nsp3165D165DgaTgaC1010B.1.1.70.000009
ORF1ab/nsp3165D165delGAT---1010B.1.1.70.000009
ORF1ab/nsp3165D165DgaTgaC99AY.250.000054
ORF1ab/nsp3165D165AgAtgCt99AY.430.00004
ORF1ab/nsp3165D165DgaTgaC88AY.1140.001849
ORF1ab/nsp3165D165GgAtgGt88AY.440.000049
ORF1ab/nsp3165D165AgAtgCt77B.1.617.20.000026
ORF1ab/nsp3165D165EgaTgaG66AY.120.10.001926
ORF1ab/nsp3165D165VgAtgTt66B.1.1.70.000005
ORF1ab/nsp3165D165GgAtgGt66P.10.000095
ORF1ab/nsp3165D165DgaTgaC55AY.1030.000031
ORF1ab/nsp3165D165DgaTgaC55AY.130.000805
ORF1ab/nsp3165D165GgAtgGt55AY.160.001898
ORF1ab/nsp3165D165DgaTgaC55AY.260.000142
ORF1ab/nsp3165D165AgAtgCt55AY.440.00003
ORF1ab/nsp3165D165DgaTgaC55AY.450.000608
ORF1ab/nsp3165D165GgAtgGt55AY.470.000156
ORF1ab/nsp3165D165delGAT---55B.10.000046
ORF1ab/nsp3165D165DgaTgaC55B.1.20.000044
ORF1ab/nsp3165D165GgAtgGt55B.1.5250.000566
ORF1ab/nsp3165D165HGatCat44All0.000001
ORF1ab/nsp3165D165GgAtgGt44AY.1020.000106
ORF1ab/nsp3165D165GgAtgGt44AY.390.000099
ORF1ab/nsp3165D165NGatAat44AY.4.40.001637
ORF1ab/nsp3165D165GgAtgGt44AY.46.40.000658
ORF1ab/nsp3165D165YGatTat44B.10.000037
ORF1ab/nsp3165D165AgAtgCt44B.1.1.70.000004
ORF1ab/nsp3165D165GgAtgGt33AY.200.000117
ORF1ab/nsp3165D165NGatAat33AY.40.000005
ORF1ab/nsp3165D165delGAT---33AY.40.000005
ORF1ab/nsp3165D165GgAtgGt33AY.4.20.000065
ORF1ab/nsp3165D165AgAtgCt33AY.590.001589
ORF1ab/nsp3165D165DgaTgaC33AY.90.000203
ORF1ab/nsp3165D165DgaTgaC33B.10.000027
ORF1ab/nsp3165D165delGAT---33B.1.1.330.001263
ORF1ab/nsp3165D165GgAtgGt33B.1.1770.00004
ORF1ab/nsp3165D165GgAtgGt33B.1.2340.000396
ORF1ab/nsp3165D165delGAT---33B.1.3510.000089
ORF1ab/nsp3165D165GgAtgGt33B.1.360.000438
ORF1ab/nsp3165D165GgAtgGt33B.1.5960.000261
ORF1ab/nsp3165D165NGatAat33B.1.617.20.000011
ORF1ab/nsp3165D165YGatTat33D.20.000225
ORF1ab/nsp3165D165del1Gat-at22All0
ORF1ab/nsp3165D165IGAtATt12All0
ORF1ab/nsp3165D165IGATATA12All0
ORF1ab/nsp3165D165DgaTgaC22AY.1020.000053
ORF1ab/nsp3165D165NGatAat22AY.1030.000012
ORF1ab/nsp3165D165YGatTat22AY.1060.00067
ORF1ab/nsp3165D165GgAtgGt22AY.1190.000071
ORF1ab/nsp3165D165YGatTat22AY.1200.000074
ORF1ab/nsp3165D165GgAtgGt22AY.260.000057
ORF1ab/nsp3165D165GgAtgGt22AY.290.000032
ORF1ab/nsp3165D165DgaTgaC22AY.390.000049
ORF1ab/nsp3165D165AgAtgCt22AY.390.000049
ORF1ab/nsp3165D165HGatCat22AY.40.000003
ORF1ab/nsp3165D165VgAtgTt22AY.40.000003
ORF1ab/nsp3165D165GgAtgGt22AY.420.00008
ORF1ab/nsp3165D165delGAT---22AY.440.000012
ORF1ab/nsp3165D165GgAtgGt22AY.50.000041
ORF1ab/nsp3165D165GgAtgGt22AY.5.40.000553
ORF1ab/nsp3165D165GgAtgGt22AY.75.10.000361
ORF1ab/nsp3165D165AgAtgCt22AY.930.000546
ORF1ab/nsp3165D165GgAtgGt22AY.990.002099
ORF1ab/nsp3165D165GgAtgGt22B.1.10.000036
ORF1ab/nsp3165D165DgaTgaC22B.1.1.1590.009346
ORF1ab/nsp3165D165GgAtgGt22B.1.1.3480.001592
ORF1ab/nsp3165D165delGAT---22B.1.1.3480.001592
ORF1ab/nsp3165D165DgaTgaC22B.1.1770.000026
ORF1ab/nsp3165D165GgAtgGt22B.1.177.560.001335
ORF1ab/nsp3165D165YGatTat22B.1.20.000018
ORF1ab/nsp3165D165NGatAat22B.1.3490.00143
ORF1ab/nsp3165D165GgAtgGt22B.1.4290.000047
ORF1ab/nsp3165D165GgAtgGt22B.1.5750.000607
ORF1ab/nsp3165D165EgaTgaG12B.1.617.20.000004
ORF1ab/nsp3165D165EgaTgaA12B.1.617.20.000004
ORF1ab/nsp3165D165VgATgTA12B.290.003509
ORF1ab/nsp3165D165VgAtgTt12B.290.003509
ORF1ab/nsp3165D165IGATATA12B.290.003509
ORF1ab/nsp3165D165IGAtATt12B.290.003509
ORF1ab/nsp3165D165delGAT---22N.60.014184
ORF1ab/nsp3165D165GgAtgGt22P.1.100.000539
ORF1ab/nsp3165D165YGatTat11A.20.000662
ORF1ab/nsp3165D165KGaTAaA11All0
ORF1ab/nsp3165D165LGAtCTt11All0
ORF1ab/nsp3165D165del2GATA--11All0
ORF1ab/nsp3165D165GgAtgGt11AY.100.00053
ORF1ab/nsp3165D165GgAtgGt11AY.1000.000046
ORF1ab/nsp3165D165EgaTgaG11AY.1000.000046
ORF1ab/nsp3165D165delGAT---11AY.1030.000006
ORF1ab/nsp3165D165delGAT---11AY.1080.001103
ORF1ab/nsp3165D165AgAtgCt11AY.1130.000142
ORF1ab/nsp3165D165GgAtgGt11AY.1170.000085
ORF1ab/nsp3165D165GgAtgGt11AY.1180.000063
ORF1ab/nsp3165D165delGAT---11AY.1200.000037
ORF1ab/nsp3165D165NGatAat11AY.1200.000037
ORF1ab/nsp3165D165AgAtgCt11AY.1210.000135
ORF1ab/nsp3165D165YGatTat11AY.1210.000135
ORF1ab/nsp3165D165GgAtgGt11AY.130.000161
ORF1ab/nsp3165D165DgaTgaC11AY.140.000088
ORF1ab/nsp3165D165AgAtgCt11AY.190.00114
ORF1ab/nsp3165D165delGAT---11AY.200.000039
ORF1ab/nsp3165D165NGatAat11AY.200.000039
ORF1ab/nsp3165D165NGatAat11AY.230.00007
ORF1ab/nsp3165D165EgaTgaG11AY.240.000431
ORF1ab/nsp3165D165EgaTgaA11AY.250.000006
ORF1ab/nsp3165D165YGatTat11AY.250.000006
ORF1ab/nsp3165D165VgAtgTt11AY.30.00001
ORF1ab/nsp3165D165AgAtgCt11AY.30.00001
ORF1ab/nsp3165D165AgAtgCt11AY.320.000532
ORF1ab/nsp3165D165DgaTgaC11AY.330.000067
ORF1ab/nsp3165D165GgAtgGt11AY.340.000097
ORF1ab/nsp3165D165GgAtgGt11AY.370.000316
ORF1ab/nsp3165D165YGatTat11AY.40.000002
ORF1ab/nsp3165D165GgAtgGt11AY.400.000964
ORF1ab/nsp3165D165DgaTgaC11AY.430.000004
ORF1ab/nsp3165D165NGatAat11AY.430.000004
ORF1ab/nsp3165D165YGatTat11AY.430.000004
ORF1ab/nsp3165D165EgaTgaA11AY.440.000006
ORF1ab/nsp3165D165HGatCat11AY.450.000122
ORF1ab/nsp3165D165GgAtgGt11AY.450.000122
ORF1ab/nsp3165D165GgAtgGt11AY.46.20.000635
ORF1ab/nsp3165D165AgAtgCt11AY.470.000031
ORF1ab/nsp3165D165GgAtgGt11AY.490.003195
ORF1ab/nsp3165D165delGAT---11AY.50.000021
ORF1ab/nsp3165D165DgaTgaC11AY.50.000021
ORF1ab/nsp3165D165AgAtgCt11AY.5.30.000337
ORF1ab/nsp3165D165AgAtgCt11AY.580.000907
ORF1ab/nsp3165D165GgAtgGt11AY.590.00053
ORF1ab/nsp3165D165GgAtgGt11AY.60.000041
ORF1ab/nsp3165D165DgaTgaC11AY.60.000041
ORF1ab/nsp3165D165delGAT---11AY.610.000105
ORF1ab/nsp3165D165GgAtgGt11AY.650.000533
ORF1ab/nsp3165D165delGAT---11AY.660.00107
ORF1ab/nsp3165D165GgAtgGt11AY.70.000196
ORF1ab/nsp3165D165DgaTgaC11AY.710.000475
ORF1ab/nsp3165D165delGAT---11AY.75.10.00018
ORF1ab/nsp3165D165AgAtgCt11AY.880.000884
ORF1ab/nsp3165D165EgaTgaA11AY.90.000068
ORF1ab/nsp3165D165delGAT---11AY.90.000068
ORF1ab/nsp3165D165AgAtgCt11AY.9.20.000037
ORF1ab/nsp3165D165GgAtgGt11AY.980.000079
ORF1ab/nsp3165D165NGatAat11AY.980.000079
ORF1ab/nsp3165D165YGatTat11B0.000128
ORF1ab/nsp3165D165DgaTgaC11B0.000128
ORF1ab/nsp3165D165AgAtgCt11B.1.10.000018
ORF1ab/nsp3165D165delGAT---11B.1.10.000018
ORF1ab/nsp3165D165LGAtCTt11B.1.10.000018
ORF1ab/nsp3165D165EgaTgaA11B.1.10.000018
ORF1ab/nsp3165D165DgaTgaC11B.1.1.10.000327
ORF1ab/nsp3165D165GgAtgGt11B.1.1.2220.000204
ORF1ab/nsp3165D165DgaTgaC11B.1.1.2220.000204
ORF1ab/nsp3165D165NGatAat11B.1.1.2430.004082
ORF1ab/nsp3165D165delGAT---11B.1.1.2840.000107
ORF1ab/nsp3165D165GgAtgGt11B.1.1.2840.000107
ORF1ab/nsp3165D165GgAtgGt11B.1.1.3060.000438
ORF1ab/nsp3165D165GgAtgGt11B.1.1.5190.00004
ORF1ab/nsp3165D165del1Gat-at11B.1.1.70.000001
ORF1ab/nsp3165D165DgaTgaC11B.1.1280.000635
ORF1ab/nsp3165D165YGatTat11B.1.1600.000031
ORF1ab/nsp3165D165EgaTgaG11B.1.160.160.000929
ORF1ab/nsp3165D165delGAT---11B.1.160.80.001289
ORF1ab/nsp3165D165AgAtgCt11B.1.1640.014925
ORF1ab/nsp3165D165AgAtgCt11B.1.1770.000013
ORF1ab/nsp3165D165GgAtgGt11B.1.177.320.00135
ORF1ab/nsp3165D165DgaTgaC11B.1.177.560.000668
ORF1ab/nsp3165D165delGAT---11B.1.177.80.000752
ORF1ab/nsp3165D165delGAT---11B.1.177.830.001481
ORF1ab/nsp3165D165del1Gat-at11B.1.20.000009
ORF1ab/nsp3165D165DgaTgaC11B.1.2060.000816
ORF1ab/nsp3165D165GgAtgGt11B.1.220.001318
ORF1ab/nsp3165D165DgaTgaC11B.1.2580.000067
ORF1ab/nsp3165D165GgAtgGt11B.1.2580.000067
ORF1ab/nsp3165D165EgaTgaA11B.1.258.40.003448
ORF1ab/nsp3165D165GgAtgGt11B.1.2650.001271
ORF1ab/nsp3165D165AgAtgCt11B.1.3320.003497
ORF1ab/nsp3165D165EgaTgaG11B.1.3480.018182
ORF1ab/nsp3165D165AgAtgCt11B.1.3510.00003
ORF1ab/nsp3165D165NGatAat11B.1.360.000146
ORF1ab/nsp3165D165GgAtgGt11B.1.36.170.000494
ORF1ab/nsp3165D165GgAtgGt11B.1.4020.009804
ORF1ab/nsp3165D165DgaTgaC11B.1.4270.00005
ORF1ab/nsp3165D165delGAT---11B.1.4290.000024
ORF1ab/nsp3165D165YGatTat11B.1.4290.000024
ORF1ab/nsp3165D165GgAtgGt11B.1.4560.003268
ORF1ab/nsp3165D165DgaTgaC11B.1.4970.000315
ORF1ab/nsp3165D165YGatTat11B.1.5260.000024
ORF1ab/nsp3165D165YGatTat11B.1.5610.000397
ORF1ab/nsp3165D165DgaTgaC11B.1.6050.005952
ORF1ab/nsp3165D165GgAtgGt11B.1.617.10.000129
ORF1ab/nsp3165D165HGatCat11B.1.617.10.000129
ORF1ab/nsp3165D165delGAT---11B.1.617.20.000004
ORF1ab/nsp3165D165EgaTgaA11B.1.6210.000089
ORF1ab/nsp3165D165EgaTgaG11B.1.6370.000073
ORF1ab/nsp3165D165KGaTAaA11B.290.003509
ORF1ab/nsp3165D165NGatAat11B.290.003509
ORF1ab/nsp3165D165EgaTgaA11B.290.003509
ORF1ab/nsp3165D165delGAT---11B.340.013699
ORF1ab/nsp3165D165GgAtgGt11B.400.000364
ORF1ab/nsp3165D165delGAT---11C.170.055556
ORF1ab/nsp3165D165NGatAat11C.370.000116
ORF1ab/nsp3165D165DgaTgaC11C.370.000116
ORF1ab/nsp3165D165GgAtgGt11P.1.150.000232
ORF1ab/nsp3165D165GgAtgGt11P.1.40.000977
ORF1ab/nsp3165D165GgAtgGt11P.1.80.004785
ORF1ab/nsp3165D165GgAtgGt11P.20.000187
ORF1ab/nsp3165D165delGAT---11Q.80.000165
ORF1ab/nsp3165D165NGatAat11R.10.00009
ORF1ab/nsp3165D165del2GATA--11R.10.00009
ORF1ab/nsp3165D165delGAT---11U.20.008772

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.