CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 165

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3165D165GD983GnonsyngAtgGt132413230.9992453212-3214
ORF1ab/nsp3165D165GD983GnonsyngATgGG132410.0007552873212-3214
ORF1ab/nsp3165D165DD983DsyngaTgaC15315313212-3214
ORF1ab/nsp3165D165YD983YnonsynGatTat12412413212-3214
ORF1ab/nsp3165D165ND983NnonsynGatAat11911913212-3214
ORF1ab/nsp3165D165AD983AnonsyngAtgCt999913212-3214
ORF1ab/nsp3165D165delD983deldelGAT---505013212-3214
ORF1ab/nsp3165D165ED983EnonsyngaTgaG20120.63212-3214
ORF1ab/nsp3165D165ED983EnonsyngaTgaA2080.43212-3214
ORF1ab/nsp3165D165VD983VnonsyngAtgTt11100.9090913212-3214
ORF1ab/nsp3165D165VD983VnonsyngATgTA1110.09090913212-3214
ORF1ab/nsp3165D165HD983HnonsynGatCat4413212-3214
ORF1ab/nsp3165D165del1D983del1delGat-at2213212-3214
ORF1ab/nsp3165D165ID983InonsynGATATA210.53212-3214
ORF1ab/nsp3165D165ID983InonsynGAtATt210.53212-3214
ORF1ab/nsp3165D165del2D983del2delGATA--1113212-3214
ORF1ab/nsp3165D165KD983KnonsynGaTAaA1113212-3214
ORF1ab/nsp3165D165LD983LnonsynGAtCTt1113212-3214

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3165D165GgAtgGt13231324All0.000253
ORF1ab/nsp3165D165GgATgGG11324All0
ORF1ab/nsp3165D165GgAtgGt391391B.1.177.300.982412
ORF1ab/nsp3165D165GgAtgGt176176AY.40.000274
ORF1ab/nsp3165D165DgaTgaC153153All0.000029
ORF1ab/nsp3165D165YGatTat124124All0.000024
ORF1ab/nsp3165D165GgAtgGt124124AY.1030.00077
ORF1ab/nsp3165D165NGatAat119119All0.000023
ORF1ab/nsp3165D165GgAtgGt113113B.1.177.90.150466
ORF1ab/nsp3165D165GgAtgGt102102AY.250.000614
ORF1ab/nsp3165D165YGatTat101101B.1.1.70.00009
ORF1ab/nsp3165D165AgAtgCt9999All0.000019
ORF1ab/nsp3165D165GgAtgGt7575B.1.1.70.000067
ORF1ab/nsp3165D165GgAtgGt5252B.1.20.000458
ORF1ab/nsp3165D165delGAT---5050All0.00001
ORF1ab/nsp3165D165NGatAat4545B.1.2580.002995
ORF1ab/nsp3165D165AgAtgCt3434AY.4.40.013912
ORF1ab/nsp3165D165GgAtgGt3434B.1.36.250.075055
ORF1ab/nsp3165D165NGatAat2929AY.130.004668
ORF1ab/nsp3165D165DgaTgaC2626AY.40.00004
ORF1ab/nsp3165D165GgAtgGt2424B.10.00022
ORF1ab/nsp3165D165GgAtgGt2223B.1.617.20.000083
ORF1ab/nsp3165D165GgATgGG123B.1.617.20.000004
ORF1ab/nsp3165D165NGatAat2121B.1.1770.000277
ORF1ab/nsp3165D165EgaTgaG1220All0.000002
ORF1ab/nsp3165D165EgaTgaA820All0.000002
ORF1ab/nsp3165D165GgAtgGt2020AY.9.10.001674
ORF1ab/nsp3165D165DgaTgaC2020B.1.4290.000471
ORF1ab/nsp3165D165AgAtgCt1818AY.40.000028
ORF1ab/nsp3165D165GgAtgGt1616AY.30.000159
ORF1ab/nsp3165D165GgAtgGt1616B.1.5260.000376
ORF1ab/nsp3165D165GgAtgGt1414AY.46.60.001011
ORF1ab/nsp3165D165GgAtgGt1414B.1.4270.000707
ORF1ab/nsp3165D165DgaTgaC1313B.1.617.20.000049
ORF1ab/nsp3165D165VgAtgTt1011All0.000002
ORF1ab/nsp3165D165VgATgTA111All0
ORF1ab/nsp3165D165DgaTgaC1111AY.420.000443
ORF1ab/nsp3165D165GgAtgGt1010AY.430.000044
ORF1ab/nsp3165D165DgaTgaC1010B.1.1.70.000009
ORF1ab/nsp3165D165delGAT---1010B.1.1.70.000009
ORF1ab/nsp3165D165DgaTgaC99AY.250.000054
ORF1ab/nsp3165D165AgAtgCt99AY.430.00004
ORF1ab/nsp3165D165DgaTgaC88AY.1140.001849
ORF1ab/nsp3165D165GgAtgGt88AY.440.000049
ORF1ab/nsp3165D165AgAtgCt77B.1.617.20.000026
ORF1ab/nsp3165D165EgaTgaG66AY.120.10.001926
ORF1ab/nsp3165D165VgAtgTt66B.1.1.70.000005
ORF1ab/nsp3165D165GgAtgGt66P.10.000095
ORF1ab/nsp3165D165DgaTgaC55AY.1030.000031
ORF1ab/nsp3165D165DgaTgaC55AY.130.000805
ORF1ab/nsp3165D165GgAtgGt55AY.160.001898
ORF1ab/nsp3165D165DgaTgaC55AY.260.000142
ORF1ab/nsp3165D165AgAtgCt55AY.440.00003
ORF1ab/nsp3165D165DgaTgaC55AY.450.000608
ORF1ab/nsp3165D165GgAtgGt55AY.470.000156
ORF1ab/nsp3165D165delGAT---55B.10.000046
ORF1ab/nsp3165D165DgaTgaC55B.1.20.000044
ORF1ab/nsp3165D165GgAtgGt55B.1.5250.000566
ORF1ab/nsp3165D165HGatCat44All0.000001
ORF1ab/nsp3165D165GgAtgGt44AY.1020.000106
ORF1ab/nsp3165D165GgAtgGt44AY.390.000099
ORF1ab/nsp3165D165NGatAat44AY.4.40.001637
ORF1ab/nsp3165D165GgAtgGt44AY.46.40.000658
ORF1ab/nsp3165D165YGatTat44B.10.000037
ORF1ab/nsp3165D165AgAtgCt44B.1.1.70.000004
ORF1ab/nsp3165D165GgAtgGt33AY.200.000117
ORF1ab/nsp3165D165NGatAat33AY.40.000005
ORF1ab/nsp3165D165delGAT---33AY.40.000005
ORF1ab/nsp3165D165GgAtgGt33AY.4.20.000065
ORF1ab/nsp3165D165AgAtgCt33AY.590.001589
ORF1ab/nsp3165D165DgaTgaC33AY.90.000203
ORF1ab/nsp3165D165DgaTgaC33B.10.000027
ORF1ab/nsp3165D165delGAT---33B.1.1.330.001263
ORF1ab/nsp3165D165GgAtgGt33B.1.1770.00004
ORF1ab/nsp3165D165GgAtgGt33B.1.2340.000396
ORF1ab/nsp3165D165delGAT---33B.1.3510.000089
ORF1ab/nsp3165D165GgAtgGt33B.1.360.000438
ORF1ab/nsp3165D165GgAtgGt33B.1.5960.000261
ORF1ab/nsp3165D165NGatAat33B.1.617.20.000011
ORF1ab/nsp3165D165YGatTat33D.20.000225
ORF1ab/nsp3165D165del1Gat-at22All0
ORF1ab/nsp3165D165IGAtATt12All0
ORF1ab/nsp3165D165IGATATA12All0
ORF1ab/nsp3165D165DgaTgaC22AY.1020.000053
ORF1ab/nsp3165D165NGatAat22AY.1030.000012
ORF1ab/nsp3165D165YGatTat22AY.1060.00067
ORF1ab/nsp3165D165GgAtgGt22AY.1190.000071
ORF1ab/nsp3165D165YGatTat22AY.1200.000074
ORF1ab/nsp3165D165GgAtgGt22AY.260.000057
ORF1ab/nsp3165D165GgAtgGt22AY.290.000032
ORF1ab/nsp3165D165DgaTgaC22AY.390.000049
ORF1ab/nsp3165D165AgAtgCt22AY.390.000049
ORF1ab/nsp3165D165HGatCat22AY.40.000003
ORF1ab/nsp3165D165VgAtgTt22AY.40.000003
ORF1ab/nsp3165D165GgAtgGt22AY.420.00008
ORF1ab/nsp3165D165delGAT---22AY.440.000012
ORF1ab/nsp3165D165GgAtgGt22AY.50.000041
ORF1ab/nsp3165D165GgAtgGt22AY.5.40.000553
ORF1ab/nsp3165D165GgAtgGt22AY.75.10.000361
ORF1ab/nsp3165D165AgAtgCt22AY.930.000546
ORF1ab/nsp3165D165GgAtgGt22AY.990.002099
ORF1ab/nsp3165D165GgAtgGt22B.1.10.000036
ORF1ab/nsp3165D165DgaTgaC22B.1.1.1590.009346
ORF1ab/nsp3165D165GgAtgGt22B.1.1.3480.001592
ORF1ab/nsp3165D165delGAT---22B.1.1.3480.001592
ORF1ab/nsp3165D165DgaTgaC22B.1.1770.000026
ORF1ab/nsp3165D165GgAtgGt22B.1.177.560.001335
ORF1ab/nsp3165D165YGatTat22B.1.20.000018
ORF1ab/nsp3165D165NGatAat22B.1.3490.00143
ORF1ab/nsp3165D165GgAtgGt22B.1.4290.000047
ORF1ab/nsp3165D165GgAtgGt22B.1.5750.000607
ORF1ab/nsp3165D165EgaTgaG12B.1.617.20.000004
ORF1ab/nsp3165D165EgaTgaA12B.1.617.20.000004
ORF1ab/nsp3165D165VgATgTA12B.290.003509
ORF1ab/nsp3165D165VgAtgTt12B.290.003509
ORF1ab/nsp3165D165IGATATA12B.290.003509
ORF1ab/nsp3165D165IGAtATt12B.290.003509
ORF1ab/nsp3165D165delGAT---22N.60.014184
ORF1ab/nsp3165D165GgAtgGt22P.1.100.000539
ORF1ab/nsp3165D165YGatTat11A.20.000662
ORF1ab/nsp3165D165KGaTAaA11All0
ORF1ab/nsp3165D165LGAtCTt11All0
ORF1ab/nsp3165D165del2GATA--11All0
ORF1ab/nsp3165D165GgAtgGt11AY.100.00053
ORF1ab/nsp3165D165GgAtgGt11AY.1000.000046
ORF1ab/nsp3165D165EgaTgaG11AY.1000.000046
ORF1ab/nsp3165D165delGAT---11AY.1030.000006
ORF1ab/nsp3165D165delGAT---11AY.1080.001103
ORF1ab/nsp3165D165AgAtgCt11AY.1130.000142
ORF1ab/nsp3165D165GgAtgGt11AY.1170.000085
ORF1ab/nsp3165D165GgAtgGt11AY.1180.000063
ORF1ab/nsp3165D165delGAT---11AY.1200.000037
ORF1ab/nsp3165D165NGatAat11AY.1200.000037
ORF1ab/nsp3165D165AgAtgCt11AY.1210.000135
ORF1ab/nsp3165D165YGatTat11AY.1210.000135
ORF1ab/nsp3165D165GgAtgGt11AY.130.000161
ORF1ab/nsp3165D165DgaTgaC11AY.140.000088
ORF1ab/nsp3165D165AgAtgCt11AY.190.00114
ORF1ab/nsp3165D165delGAT---11AY.200.000039
ORF1ab/nsp3165D165NGatAat11AY.200.000039
ORF1ab/nsp3165D165NGatAat11AY.230.00007
ORF1ab/nsp3165D165EgaTgaG11AY.240.000431
ORF1ab/nsp3165D165EgaTgaA11AY.250.000006
ORF1ab/nsp3165D165YGatTat11AY.250.000006
ORF1ab/nsp3165D165VgAtgTt11AY.30.00001
ORF1ab/nsp3165D165AgAtgCt11AY.30.00001
ORF1ab/nsp3165D165AgAtgCt11AY.320.000532
ORF1ab/nsp3165D165DgaTgaC11AY.330.000067
ORF1ab/nsp3165D165GgAtgGt11AY.340.000097
ORF1ab/nsp3165D165GgAtgGt11AY.370.000316
ORF1ab/nsp3165D165YGatTat11AY.40.000002
ORF1ab/nsp3165D165GgAtgGt11AY.400.000964
ORF1ab/nsp3165D165DgaTgaC11AY.430.000004
ORF1ab/nsp3165D165NGatAat11AY.430.000004
ORF1ab/nsp3165D165YGatTat11AY.430.000004
ORF1ab/nsp3165D165EgaTgaA11AY.440.000006
ORF1ab/nsp3165D165HGatCat11AY.450.000122
ORF1ab/nsp3165D165GgAtgGt11AY.450.000122
ORF1ab/nsp3165D165GgAtgGt11AY.46.20.000635
ORF1ab/nsp3165D165AgAtgCt11AY.470.000031
ORF1ab/nsp3165D165GgAtgGt11AY.490.003195
ORF1ab/nsp3165D165delGAT---11AY.50.000021
ORF1ab/nsp3165D165DgaTgaC11AY.50.000021
ORF1ab/nsp3165D165AgAtgCt11AY.5.30.000337
ORF1ab/nsp3165D165AgAtgCt11AY.580.000907
ORF1ab/nsp3165D165GgAtgGt11AY.590.00053
ORF1ab/nsp3165D165GgAtgGt11AY.60.000041
ORF1ab/nsp3165D165DgaTgaC11AY.60.000041
ORF1ab/nsp3165D165delGAT---11AY.610.000105
ORF1ab/nsp3165D165GgAtgGt11AY.650.000533
ORF1ab/nsp3165D165delGAT---11AY.660.00107
ORF1ab/nsp3165D165GgAtgGt11AY.70.000196
ORF1ab/nsp3165D165DgaTgaC11AY.710.000475
ORF1ab/nsp3165D165delGAT---11AY.75.10.00018
ORF1ab/nsp3165D165AgAtgCt11AY.880.000884
ORF1ab/nsp3165D165EgaTgaA11AY.90.000068
ORF1ab/nsp3165D165delGAT---11AY.90.000068
ORF1ab/nsp3165D165AgAtgCt11AY.9.20.000037
ORF1ab/nsp3165D165GgAtgGt11AY.980.000079
ORF1ab/nsp3165D165NGatAat11AY.980.000079
ORF1ab/nsp3165D165YGatTat11B0.000128
ORF1ab/nsp3165D165DgaTgaC11B0.000128
ORF1ab/nsp3165D165AgAtgCt11B.1.10.000018
ORF1ab/nsp3165D165delGAT---11B.1.10.000018
ORF1ab/nsp3165D165LGAtCTt11B.1.10.000018
ORF1ab/nsp3165D165EgaTgaA11B.1.10.000018
ORF1ab/nsp3165D165DgaTgaC11B.1.1.10.000327
ORF1ab/nsp3165D165GgAtgGt11B.1.1.2220.000204
ORF1ab/nsp3165D165DgaTgaC11B.1.1.2220.000204
ORF1ab/nsp3165D165NGatAat11B.1.1.2430.004082
ORF1ab/nsp3165D165delGAT---11B.1.1.2840.000107
ORF1ab/nsp3165D165GgAtgGt11B.1.1.2840.000107
ORF1ab/nsp3165D165GgAtgGt11B.1.1.3060.000438
ORF1ab/nsp3165D165GgAtgGt11B.1.1.5190.00004
ORF1ab/nsp3165D165del1Gat-at11B.1.1.70.000001
ORF1ab/nsp3165D165DgaTgaC11B.1.1280.000635
ORF1ab/nsp3165D165YGatTat11B.1.1600.000031
ORF1ab/nsp3165D165EgaTgaG11B.1.160.160.000929
ORF1ab/nsp3165D165delGAT---11B.1.160.80.001289
ORF1ab/nsp3165D165AgAtgCt11B.1.1640.014925
ORF1ab/nsp3165D165AgAtgCt11B.1.1770.000013
ORF1ab/nsp3165D165GgAtgGt11B.1.177.320.00135
ORF1ab/nsp3165D165DgaTgaC11B.1.177.560.000668
ORF1ab/nsp3165D165delGAT---11B.1.177.80.000752
ORF1ab/nsp3165D165delGAT---11B.1.177.830.001481
ORF1ab/nsp3165D165del1Gat-at11B.1.20.000009
ORF1ab/nsp3165D165DgaTgaC11B.1.2060.000816
ORF1ab/nsp3165D165GgAtgGt11B.1.220.001318
ORF1ab/nsp3165D165DgaTgaC11B.1.2580.000067
ORF1ab/nsp3165D165GgAtgGt11B.1.2580.000067
ORF1ab/nsp3165D165EgaTgaA11B.1.258.40.003448
ORF1ab/nsp3165D165GgAtgGt11B.1.2650.001271
ORF1ab/nsp3165D165AgAtgCt11B.1.3320.003497
ORF1ab/nsp3165D165EgaTgaG11B.1.3480.018182
ORF1ab/nsp3165D165AgAtgCt11B.1.3510.00003
ORF1ab/nsp3165D165NGatAat11B.1.360.000146
ORF1ab/nsp3165D165GgAtgGt11B.1.36.170.000494
ORF1ab/nsp3165D165GgAtgGt11B.1.4020.009804
ORF1ab/nsp3165D165DgaTgaC11B.1.4270.00005
ORF1ab/nsp3165D165delGAT---11B.1.4290.000024
ORF1ab/nsp3165D165YGatTat11B.1.4290.000024
ORF1ab/nsp3165D165GgAtgGt11B.1.4560.003268
ORF1ab/nsp3165D165DgaTgaC11B.1.4970.000315
ORF1ab/nsp3165D165YGatTat11B.1.5260.000024
ORF1ab/nsp3165D165YGatTat11B.1.5610.000397
ORF1ab/nsp3165D165DgaTgaC11B.1.6050.005952
ORF1ab/nsp3165D165GgAtgGt11B.1.617.10.000129
ORF1ab/nsp3165D165HGatCat11B.1.617.10.000129
ORF1ab/nsp3165D165delGAT---11B.1.617.20.000004
ORF1ab/nsp3165D165EgaTgaA11B.1.6210.000089
ORF1ab/nsp3165D165EgaTgaG11B.1.6370.000073
ORF1ab/nsp3165D165KGaTAaA11B.290.003509
ORF1ab/nsp3165D165NGatAat11B.290.003509
ORF1ab/nsp3165D165EgaTgaA11B.290.003509
ORF1ab/nsp3165D165delGAT---11B.340.013699
ORF1ab/nsp3165D165GgAtgGt11B.400.000364
ORF1ab/nsp3165D165delGAT---11C.170.055556
ORF1ab/nsp3165D165NGatAat11C.370.000116
ORF1ab/nsp3165D165DgaTgaC11C.370.000116
ORF1ab/nsp3165D165GgAtgGt11P.1.150.000232
ORF1ab/nsp3165D165GgAtgGt11P.1.40.000977
ORF1ab/nsp3165D165GgAtgGt11P.1.80.004785
ORF1ab/nsp3165D165GgAtgGt11P.20.000187
ORF1ab/nsp3165D165delGAT---11Q.80.000165
ORF1ab/nsp3165D165NGatAat11R.10.00009
ORF1ab/nsp3165D165del2GATA--11R.10.00009
ORF1ab/nsp3165D165delGAT---11U.20.008772