CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1639

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31639T1639AT2457AnonsynAcaGca43943917634-7636
ORF1ab/nsp31639T1639TT2457TsynacAacG3802530.6657897634-7636
ORF1ab/nsp31639T1639TT2457TsynacAacC3801040.2736847634-7636
ORF1ab/nsp31639T1639TT2457TsynacAacT380230.06052637634-7636
ORF1ab/nsp31639T1639IT2457InonsynaCaaTa3123090.9903857634-7636
ORF1ab/nsp31639T1639IT2457InonsynaCAaTC31220.006410267634-7636
ORF1ab/nsp31639T1639IT2457InonsynaCAaTT31210.003205137634-7636
ORF1ab/nsp31639T1639delT2457deldelACA---959517634-7636
ORF1ab/nsp31639T1639KT2457KnonsynaCaaAa19180.9473687634-7636
ORF1ab/nsp31639T1639KT2457KnonsynaCAaAG1910.05263167634-7636
ORF1ab/nsp31639T1639ST2457SnonsynAcaTca1050.57634-7636
ORF1ab/nsp31639T1639ST2457SnonsynAcATcC1030.37634-7636
ORF1ab/nsp31639T1639ST2457SnonsynAcATcT1010.17634-7636
ORF1ab/nsp31639T1639ST2457SnonsynAcATcG1010.17634-7636
ORF1ab/nsp31639T1639RT2457RnonsynaCaaGa9917634-7636
ORF1ab/nsp31639T1639del2T2457del2delACa--a540.87634-7636
ORF1ab/nsp31639T1639NT2457NnonsynaCAaAC530.67634-7636
ORF1ab/nsp31639T1639YT2457YnonsynACATAC530.67634-7636
ORF1ab/nsp31639T1639YT2457YnonsynACATAT520.47634-7636
ORF1ab/nsp31639T1639NT2457NnonsynaCAaAT520.47634-7636
ORF1ab/nsp31639T1639del2T2457del2delaCAa--510.27634-7636
ORF1ab/nsp31639T1639LT2457LnonsynACaTTa430.757634-7636
ORF1ab/nsp31639T1639XT2457XnonsynACaTAa430.757634-7636
ORF1ab/nsp31639T1639LT2457LnonsynACATTG410.257634-7636
ORF1ab/nsp31639T1639XT2457XnonsynACATAG410.257634-7636
ORF1ab/nsp31639T1639FT2457FnonsynACATTC320.6666677634-7636
ORF1ab/nsp31639T1639FT2457FnonsynACATTT310.3333337634-7636
ORF1ab/nsp31639T1639PT2457PnonsynAcaCca1117634-7636
ORF1ab/nsp31639T1639MT2457MnonsynaCAaTG1117634-7636
ORF1ab/nsp31639T1639del1T2457del1delAca-ca1117634-7636

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31639T1639AAcaGca439439All0.000084
ORF1ab/nsp31639T1639TacAacG253380All0.000048
ORF1ab/nsp31639T1639TacAacC104380All0.00002
ORF1ab/nsp31639T1639TacAacT23380All0.000004
ORF1ab/nsp31639T1639IaCaaTa309312All0.000059
ORF1ab/nsp31639T1639IaCAaTC2312All0
ORF1ab/nsp31639T1639IaCAaTT1312All0
ORF1ab/nsp31639T1639AAcaGca9797B.1.3510.002883
ORF1ab/nsp31639T1639IaCaaTa9696AY.250.000577
ORF1ab/nsp31639T1639delACA---9595All0.000018
ORF1ab/nsp31639T1639TacAacC8181B.1.2210.005754
ORF1ab/nsp31639T1639AAcaGca7373B.10.000669
ORF1ab/nsp31639T1639AAcaGca7070B.1.1.4480.142276
ORF1ab/nsp31639T1639AAcaGca6363C.10.150718
ORF1ab/nsp31639T1639AAcaGca4848B.1.1.520.585366
ORF1ab/nsp31639T1639TacAacG4646B.1.1.4200.046278
ORF1ab/nsp31639T1639delACA---4444B.1.1.70.000039
ORF1ab/nsp31639T1639IaCaaTa4343AY.40.000067
ORF1ab/nsp31639T1639IaCaaTa3838AY.430.000168
ORF1ab/nsp31639T1639TacAacG2732B.1.1.70.000024
ORF1ab/nsp31639T1639TacAacC432B.1.1.70.000004
ORF1ab/nsp31639T1639TacAacT132B.1.1.70.000001
ORF1ab/nsp31639T1639TacAacG2628AY.440.000158
ORF1ab/nsp31639T1639TacAacT228AY.440.000012
ORF1ab/nsp31639T1639TacAacG2222B.1.20.000194
ORF1ab/nsp31639T1639AAcaGca2020B.1.3810.15625
ORF1ab/nsp31639T1639KaCaaAa1819All0.000003
ORF1ab/nsp31639T1639KaCAaAG119All0
ORF1ab/nsp31639T1639IaCaaTa1919AY.1030.000118
ORF1ab/nsp31639T1639TacAacG1414AY.1170.001183
ORF1ab/nsp31639T1639TacAacG1414AY.1180.000877
ORF1ab/nsp31639T1639AAcaGca1414B.1.10.000254
ORF1ab/nsp31639T1639IaCaaTa1414B.1.1.70.000013
ORF1ab/nsp31639T1639TacAacG1013B.1.10.000181
ORF1ab/nsp31639T1639TacAacT213B.1.10.000036
ORF1ab/nsp31639T1639TacAacC113B.1.10.000018
ORF1ab/nsp31639T1639TacAacT1212B.1.6210.001062
ORF1ab/nsp31639T1639TacAacG1111P.20.002053
ORF1ab/nsp31639T1639SAcaTca510All0.000001
ORF1ab/nsp31639T1639SAcATcC310All0.000001
ORF1ab/nsp31639T1639SAcATcG110All0
ORF1ab/nsp31639T1639SAcATcT110All0
ORF1ab/nsp31639T1639IaCaaTa1010AY.30.000099
ORF1ab/nsp31639T1639IaCaaTa1010AY.50.000206
ORF1ab/nsp31639T1639IaCaaTa1010B.1.617.20.000038
ORF1ab/nsp31639T1639RaCaaGa99All0.000002
ORF1ab/nsp31639T1639SAcaTca380.166667
ORF1ab/nsp31639T1639SAcATcC380.166667
ORF1ab/nsp31639T1639SAcATcG180.055556
ORF1ab/nsp31639T1639SAcATcT180.055556
ORF1ab/nsp31639T1639IaCaaTa88AY.1020.000212
ORF1ab/nsp31639T1639TacAacG88AY.1030.00005
ORF1ab/nsp31639T1639TacAacG68B.10.000055
ORF1ab/nsp31639T1639TacAacT18B.10.000009
ORF1ab/nsp31639T1639TacAacC18B.10.000009
ORF1ab/nsp31639T1639AAcaGca88B.1.1.1170.07767
ORF1ab/nsp31639T1639delACA---88B.1.1770.000105
ORF1ab/nsp31639T1639TacAacG77AY.40.000011
ORF1ab/nsp31639T1639TacAacC77B.1.5610.002779
ORF1ab/nsp31639T1639delACA---66AY.40.000009
ORF1ab/nsp31639T1639TacAacG66AY.60.000247
ORF1ab/nsp31639T1639AAcaGca66B.1.1.10.00196
ORF1ab/nsp31639T1639TacAacG56B.1.617.20.000019
ORF1ab/nsp31639T1639TacAacC16B.1.617.20.000004
ORF1ab/nsp31639T1639KaCaaAa450.222222
ORF1ab/nsp31639T1639TacAacC350.166667
ORF1ab/nsp31639T1639IaCAaTC250.111111
ORF1ab/nsp31639T1639IaCaaTa250.111111
ORF1ab/nsp31639T1639KaCAaAG150.055556
ORF1ab/nsp31639T1639IaCAaTT150.055556
ORF1ab/nsp31639T1639TacAacT150.055556
ORF1ab/nsp31639T1639TacAacG150.055556
ORF1ab/nsp31639T1639del2ACa--a45All0.000001
ORF1ab/nsp31639T1639NaCAaAC35All0.000001
ORF1ab/nsp31639T1639YACATAC35All0.000001
ORF1ab/nsp31639T1639YACATAT25All0
ORF1ab/nsp31639T1639NaCAaAT25All0
ORF1ab/nsp31639T1639del2aCAa--15All0
ORF1ab/nsp31639T1639IaCaaTa55AY.4.20.000108
ORF1ab/nsp31639T1639IaCaaTa55AY.850.002136
ORF1ab/nsp31639T1639KaCaaAa55B.10.000046
ORF1ab/nsp31639T1639IaCaaTa55B.10.000046
ORF1ab/nsp31639T1639AAcaGca55B.1.1.340.065789
ORF1ab/nsp31639T1639AAcaGca55B.1.1.570.057471
ORF1ab/nsp31639T1639NaCAaAC340.166667
ORF1ab/nsp31639T1639XACaTAa340.166667
ORF1ab/nsp31639T1639YACATAC340.166667
ORF1ab/nsp31639T1639XACATAG140.055556
ORF1ab/nsp31639T1639YACATAT140.055556
ORF1ab/nsp31639T1639NaCAaAT140.055556
ORF1ab/nsp31639T1639LACaTTa34All0.000001
ORF1ab/nsp31639T1639XACaTAa34All0.000001
ORF1ab/nsp31639T1639XACATAG14All0
ORF1ab/nsp31639T1639LACATTG14All0
ORF1ab/nsp31639T1639TacAacC44AY.1200.000149
ORF1ab/nsp31639T1639TacAacG34AY.250.000018
ORF1ab/nsp31639T1639TacAacC14AY.250.000006
ORF1ab/nsp31639T1639TacAacG44AY.290.000063
ORF1ab/nsp31639T1639IaCaaTa44AY.290.000063
ORF1ab/nsp31639T1639TacAacG44AY.430.000018
ORF1ab/nsp31639T1639IaCaaTa44AY.46.40.000658
ORF1ab/nsp31639T1639delACA---44B.10.000037
ORF1ab/nsp31639T1639AAcaGca44B.1.1.3860.266667
ORF1ab/nsp31639T1639TacAacG44B.1.1.5190.000159
ORF1ab/nsp31639T1639AAcaGca44B.1.2370.0199
ORF1ab/nsp31639T1639AAcaGca44C.20.064516
ORF1ab/nsp31639T1639FACATTC230.111111
ORF1ab/nsp31639T1639LACaTTa230.111111
ORF1ab/nsp31639T1639FACATTT130.055556
ORF1ab/nsp31639T1639LACATTG130.055556
ORF1ab/nsp31639T1639FACATTC23All0
ORF1ab/nsp31639T1639FACATTT13All0
ORF1ab/nsp31639T1639AAcaGca33B.1.1.530.041096
ORF1ab/nsp31639T1639del2ACa--a33B.1.1.70.000003
ORF1ab/nsp31639T1639KaCaaAa33B.1.2210.000213
ORF1ab/nsp31639T1639TacAacG33B.1.4290.000071
ORF1ab/nsp31639T1639RaCaaGa33B.1.5880.00273
ORF1ab/nsp31639T1639IaCaaTa33D.20.000225
ORF1ab/nsp31639T1639TacAacG23D.20.00015
ORF1ab/nsp31639T1639TacAacT13D.20.000075
ORF1ab/nsp31639T1639IaCaaTa22AY.1200.000074
ORF1ab/nsp31639T1639delACA---22AY.1200.000074
ORF1ab/nsp31639T1639IaCaaTa22AY.23.10.000835
ORF1ab/nsp31639T1639delACA---22AY.250.000012
ORF1ab/nsp31639T1639IaCaaTa22AY.330.000134
ORF1ab/nsp31639T1639IaCaaTa22AY.390.000049
ORF1ab/nsp31639T1639TacAacG22AY.50.000041
ORF1ab/nsp31639T1639IaCaaTa22AY.750.000112
ORF1ab/nsp31639T1639SAcaTca22B.10.000018
ORF1ab/nsp31639T1639IaCaaTa22B.1.10.000036
ORF1ab/nsp31639T1639AAcaGca22B.1.1.3720.001377
ORF1ab/nsp31639T1639AAcaGca22B.1.1.5070.017391
ORF1ab/nsp31639T1639AAcaGca22B.1.1.540.006042
ORF1ab/nsp31639T1639delACA---22B.1.177.540.001213
ORF1ab/nsp31639T1639delACA---22B.1.177.570.000562
ORF1ab/nsp31639T1639IaCaaTa22B.1.20.000018
ORF1ab/nsp31639T1639TacAacG22B.1.617.10.000258
ORF1ab/nsp31639T1639AAcaGca22C.90.060606
ORF1ab/nsp31639T1639MaCAaTG110.055556
ORF1ab/nsp31639T1639AAcaGca11A0.000387
ORF1ab/nsp31639T1639TacAacT11A.2.40.003367
ORF1ab/nsp31639T1639KaCaaAa11A.50.001923
ORF1ab/nsp31639T1639del1Aca-ca11All0
ORF1ab/nsp31639T1639PAcaCca11All0
ORF1ab/nsp31639T1639MaCAaTG11All0
ORF1ab/nsp31639T1639IaCaaTa11AY.1000.000046
ORF1ab/nsp31639T1639KaCaaAa11AY.1030.000006
ORF1ab/nsp31639T1639IaCaaTa11AY.1170.000085
ORF1ab/nsp31639T1639delACA---11AY.190.00114
ORF1ab/nsp31639T1639TacAacG11AY.230.00007
ORF1ab/nsp31639T1639KaCaaAa11AY.240.000431
ORF1ab/nsp31639T1639TacAacG11AY.260.000028
ORF1ab/nsp31639T1639TacAacG11AY.270.000065
ORF1ab/nsp31639T1639TacAacG11AY.29.10.000221
ORF1ab/nsp31639T1639TacAacG11AY.30.00001
ORF1ab/nsp31639T1639RaCaaGa11AY.30.00001
ORF1ab/nsp31639T1639delACA---11AY.330.000067
ORF1ab/nsp31639T1639IaCaaTa11AY.340.000097
ORF1ab/nsp31639T1639IaCaaTa11AY.360.000148
ORF1ab/nsp31639T1639TacAacG11AY.390.000025
ORF1ab/nsp31639T1639IaCaaTa11AY.39.20.001541
ORF1ab/nsp31639T1639TacAacG11AY.4.20.000022
ORF1ab/nsp31639T1639delACA---11AY.4.50.000107
ORF1ab/nsp31639T1639YACATAT11AY.440.000006
ORF1ab/nsp31639T1639delACA---11AY.46.20.000635
ORF1ab/nsp31639T1639TacAacG11AY.46.50.000198
ORF1ab/nsp31639T1639TacAacG11AY.470.000031
ORF1ab/nsp31639T1639IaCaaTa11AY.540.000095
ORF1ab/nsp31639T1639delACA---11AY.60.000041
ORF1ab/nsp31639T1639TacAacG11AY.620.000436
ORF1ab/nsp31639T1639delACA---11AY.660.00107
ORF1ab/nsp31639T1639TacAacG11AY.70.000196
ORF1ab/nsp31639T1639delACA---11AY.720.001361
ORF1ab/nsp31639T1639IaCaaTa11AY.75.10.00018
ORF1ab/nsp31639T1639delACA---11AY.810.001992
ORF1ab/nsp31639T1639IaCaaTa11AY.9.20.000037
ORF1ab/nsp31639T1639IaCaaTa11AY.980.000079
ORF1ab/nsp31639T1639TacAacG11AY.99.20.000092
ORF1ab/nsp31639T1639TacAacG11AZ.10.000867
ORF1ab/nsp31639T1639NaCAaAT11B.10.000009
ORF1ab/nsp31639T1639PAcaCca11B.1.10.000018
ORF1ab/nsp31639T1639KaCaaAa11B.1.10.000018
ORF1ab/nsp31639T1639LACaTTa11B.1.10.000018
ORF1ab/nsp31639T1639TacAacG11B.1.1.2220.000204
ORF1ab/nsp31639T1639delACA---11B.1.1.2360.006897
ORF1ab/nsp31639T1639AAcaGca11B.1.1.2530.002506
ORF1ab/nsp31639T1639AAcaGca11B.1.1.2540.011236
ORF1ab/nsp31639T1639KaCaaAa11B.1.1.2770.000759
ORF1ab/nsp31639T1639IaCaaTa11B.1.1.2840.000107
ORF1ab/nsp31639T1639RaCaaGa11B.1.1.3060.000438
ORF1ab/nsp31639T1639AAcaGca11B.1.1.3070.002532
ORF1ab/nsp31639T1639TacAacG11B.1.1.3170.000412
ORF1ab/nsp31639T1639delACA---11B.1.1.370.000193
ORF1ab/nsp31639T1639delACA---11B.1.1.460.004367
ORF1ab/nsp31639T1639TacAacG11B.1.1.5240.020833
ORF1ab/nsp31639T1639del1Aca-ca11B.1.1.70.000001
ORF1ab/nsp31639T1639delACA---11B.1.1.700.000341
ORF1ab/nsp31639T1639IaCaaTa11B.1.1.830.00271
ORF1ab/nsp31639T1639delACA---11B.1.1610.017241
ORF1ab/nsp31639T1639TacAacC11B.1.1770.000013
ORF1ab/nsp31639T1639delACA---11B.1.177.160.000664
ORF1ab/nsp31639T1639delACA---11B.1.177.180.00116
ORF1ab/nsp31639T1639del2ACa--a11B.1.177.190.001431
ORF1ab/nsp31639T1639IaCaaTa11B.1.177.230.003236
ORF1ab/nsp31639T1639TacAacG11B.1.177.40.000211
ORF1ab/nsp31639T1639TacAacG11B.1.177.530.002392
ORF1ab/nsp31639T1639delACA---11B.1.177.560.000668
ORF1ab/nsp31639T1639IaCaaTa11B.1.2060.000816
ORF1ab/nsp31639T1639IaCaaTa11B.1.2210.000071
ORF1ab/nsp31639T1639TacAacG11B.1.2430.00007
ORF1ab/nsp31639T1639AAcaGca11B.1.2430.00007
ORF1ab/nsp31639T1639IaCaaTa11B.1.2430.00007
ORF1ab/nsp31639T1639delACA---11B.1.2580.000067
ORF1ab/nsp31639T1639TacAacG11B.1.3290.000608
ORF1ab/nsp31639T1639delACA---11B.1.351.30.000876
ORF1ab/nsp31639T1639delACA---11B.1.360.000146
ORF1ab/nsp31639T1639TacAacG11B.1.36.160.001425
ORF1ab/nsp31639T1639TacAacT11B.1.36.170.000494
ORF1ab/nsp31639T1639IaCaaTa11B.1.36.360.000602
ORF1ab/nsp31639T1639delACA---11B.1.36.380.001642
ORF1ab/nsp31639T1639TacAacG11B.1.3770.004566
ORF1ab/nsp31639T1639RaCaaGa11B.1.4270.00005
ORF1ab/nsp31639T1639RaCaaGa11B.1.4290.000024
ORF1ab/nsp31639T1639IaCaaTa11B.1.466.20.000391
ORF1ab/nsp31639T1639AAcaGca11B.1.5240.001406
ORF1ab/nsp31639T1639IaCaaTa11B.1.5610.000397
ORF1ab/nsp31639T1639delACA---11B.1.5610.000397
ORF1ab/nsp31639T1639delACA---11B.1.617.20.000004
ORF1ab/nsp31639T1639delACA---11B.1.6210.000089
ORF1ab/nsp31639T1639RaCaaGa11B.1.6370.000073
ORF1ab/nsp31639T1639del2aCAa--11C.350.000774
ORF1ab/nsp31639T1639AAcaGca11C.60.037037
ORF1ab/nsp31639T1639RaCaaGa11D.20.000075
ORF1ab/nsp31639T1639TacAacT11N.40.004255
ORF1ab/nsp31639T1639TacAacG11P.10.000016
ORF1ab/nsp31639T1639delACA---11P.1.100.000269
ORF1ab/nsp31639T1639IaCaaTa11P.1.120.000484
ORF1ab/nsp31639T1639TacAacG11P.1.140.000048
ORF1ab/nsp31639T1639TacAacG11P.1.150.000232
ORF1ab/nsp31639T1639delACA---11Q.10.000126
ORF1ab/nsp31639T1639TacAacG11Q.30.000145
ORF1ab/nsp31639T1639KaCaaAa11R.10.00009