CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1634

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31634C1634delC2452deldelTGT---10810817619-7621
ORF1ab/nsp31634C1634CC2452CsyntgTtgC969617619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgtCgt1380.6153857619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgTCgA1330.2307697619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgTAgA1310.07692317619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgTAgG1310.07692317619-7621
ORF1ab/nsp31634C1634SC2452SnonsyntGttCt1170.6363647619-7621
ORF1ab/nsp31634C1634SC2452SnonsynTgtAgt1140.3636367619-7621
ORF1ab/nsp31634C1634FC2452FnonsyntGttTt101017619-7621
ORF1ab/nsp31634C1634GC2452GnonsynTgtGgt650.8333337619-7621
ORF1ab/nsp31634C1634GC2452GnonsynTgTGgA610.1666677619-7621
ORF1ab/nsp31634C1634WC2452WnonsyntgTtgG5517619-7621
ORF1ab/nsp31634C1634XC2452XnonsyntgTtgA540.87619-7621
ORF1ab/nsp31634C1634XC2452XnonsyntGTtAA510.27619-7621
ORF1ab/nsp31634C1634YC2452YnonsyntGttAt4417619-7621
ORF1ab/nsp31634C1634del2C2452del2delTGt--t420.57619-7621
ORF1ab/nsp31634C1634del2C2452del2deltGTt--420.57619-7621
ORF1ab/nsp31634C1634LC2452LnonsyntGTtTG320.6666677619-7621
ORF1ab/nsp31634C1634IC2452InonsynTGtATt320.6666677619-7621
ORF1ab/nsp31634C1634IC2452InonsynTGTATA310.3333337619-7621
ORF1ab/nsp31634C1634LC2452LnonsyntGTtTA310.3333337619-7621
ORF1ab/nsp31634C1634MC2452MnonsynTGTATG1117619-7621
ORF1ab/nsp31634C1634VC2452VnonsynTGTGTG1117619-7621
ORF1ab/nsp31634C1634KC2452KnonsynTGTAAG1117619-7621
ORF1ab/nsp31634C1634del1C2452del1delTgt-gt1117619-7621
ORF1ab/nsp31634C1634PC2452PnonsynTGtCCt1117619-7621

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31634C1634delTGT---108108All0.000021
ORF1ab/nsp31634C1634CtgTtgC9696All0.000018
ORF1ab/nsp31634C1634delTGT---5151B.1.1.70.000046
ORF1ab/nsp31634C1634CtgTtgC3838B.6.11
ORF1ab/nsp31634C1634CtgTtgC1717B.1.1.70.000015
ORF1ab/nsp31634C1634RTgtCgt813All0.000002
ORF1ab/nsp31634C1634RTgTCgA313All0.000001
ORF1ab/nsp31634C1634RTgTAgA113All0
ORF1ab/nsp31634C1634RTgTAgG113All0
ORF1ab/nsp31634C1634StGttCt711All0.000001
ORF1ab/nsp31634C1634STgtAgt411All0.000001
ORF1ab/nsp31634C1634FtGttTt1010All0.000002
ORF1ab/nsp31634C1634delTGT---1010B.1.1770.000132
ORF1ab/nsp31634C1634CtgTtgC99AY.250.000054
ORF1ab/nsp31634C1634GTgtGgt56All0.000001
ORF1ab/nsp31634C1634GTgTGgA16All0
ORF1ab/nsp31634C1634delTGT---66AY.40.000009
ORF1ab/nsp31634C1634WtgTtgG55All0.000001
ORF1ab/nsp31634C1634XtgTtgA45All0.000001
ORF1ab/nsp31634C1634XtGTtAA15All0
ORF1ab/nsp31634C1634CtgTtgC55B.1.617.20.000019
ORF1ab/nsp31634C1634YtGttAt44All0.000001
ORF1ab/nsp31634C1634del2TGt--t24All0
ORF1ab/nsp31634C1634del2tGTt--24All0
ORF1ab/nsp31634C1634RTgTCgA34B.10.000027
ORF1ab/nsp31634C1634RTgtCgt14B.10.000009
ORF1ab/nsp31634C1634FtGttTt330.166667
ORF1ab/nsp31634C1634ITGtATt230.111111
ORF1ab/nsp31634C1634LtGTtTG230.111111
ORF1ab/nsp31634C1634LtGTtTA130.055556
ORF1ab/nsp31634C1634ITGTATA130.055556
ORF1ab/nsp31634C1634ITGtATt23All0
ORF1ab/nsp31634C1634LtGTtTG23All0
ORF1ab/nsp31634C1634LtGTtTA13All0
ORF1ab/nsp31634C1634ITGTATA13All0
ORF1ab/nsp31634C1634delTGT---33AY.250.000018
ORF1ab/nsp31634C1634delTGT---33B.10.000027
ORF1ab/nsp31634C1634FtGttTt33B.1.1.70.000003
ORF1ab/nsp31634C1634CtgTtgC33B.1.2350.007557
ORF1ab/nsp31634C1634CtgTtgC33B.60.00273
ORF1ab/nsp31634C1634WtgTtgG220.111111
ORF1ab/nsp31634C1634STgtAgt220.111111
ORF1ab/nsp31634C1634RTgTAgA120.055556
ORF1ab/nsp31634C1634RTgTAgG120.055556
ORF1ab/nsp31634C1634delTGT---22AY.1200.000074
ORF1ab/nsp31634C1634CtgTtgC22AY.430.000009
ORF1ab/nsp31634C1634CtgTtgC22AY.700.000417
ORF1ab/nsp31634C1634CtgTtgC22AY.920.000575
ORF1ab/nsp31634C1634delTGT---22B.1.177.540.001213
ORF1ab/nsp31634C1634delTGT---22B.1.177.570.000562
ORF1ab/nsp31634C1634StGttCt22B.1.3980.005952
ORF1ab/nsp31634C1634MTGTATG110.055556
ORF1ab/nsp31634C1634XtgTtgA110.055556
ORF1ab/nsp31634C1634VTGTGTG11All0
ORF1ab/nsp31634C1634KTGTAAG11All0
ORF1ab/nsp31634C1634del1Tgt-gt11All0
ORF1ab/nsp31634C1634PTGtCCt11All0
ORF1ab/nsp31634C1634MTGTATG11All0
ORF1ab/nsp31634C1634CtgTtgC11AY.1030.000006
ORF1ab/nsp31634C1634CtgTtgC11AY.1180.000063
ORF1ab/nsp31634C1634RTgtCgt11AY.120.000316
ORF1ab/nsp31634C1634STgtAgt11AY.120.10.000321
ORF1ab/nsp31634C1634delTGT---11AY.190.00114
ORF1ab/nsp31634C1634CtgTtgC11AY.200.000039
ORF1ab/nsp31634C1634delTGT---11AY.240.000431
ORF1ab/nsp31634C1634XtgTtgA11AY.250.000006
ORF1ab/nsp31634C1634YtGttAt11AY.30.00001
ORF1ab/nsp31634C1634delTGT---11AY.330.000067
ORF1ab/nsp31634C1634CtgTtgC11AY.390.000025
ORF1ab/nsp31634C1634RTgtCgt11AY.40.000002
ORF1ab/nsp31634C1634delTGT---11AY.4.50.000107
ORF1ab/nsp31634C1634YtGttAt11AY.430.000004
ORF1ab/nsp31634C1634CtgTtgC11AY.440.000006
ORF1ab/nsp31634C1634delTGT---11AY.440.000006
ORF1ab/nsp31634C1634RTgtCgt11AY.46.20.000635
ORF1ab/nsp31634C1634delTGT---11AY.46.20.000635
ORF1ab/nsp31634C1634CtgTtgC11AY.50.000021
ORF1ab/nsp31634C1634delTGT---11AY.50.000021
ORF1ab/nsp31634C1634delTGT---11AY.60.000041
ORF1ab/nsp31634C1634delTGT---11AY.660.00107
ORF1ab/nsp31634C1634YtGttAt11AY.700.000209
ORF1ab/nsp31634C1634delTGT---11AY.720.001361
ORF1ab/nsp31634C1634CtgTtgC11AY.770.001127
ORF1ab/nsp31634C1634delTGT---11AY.810.001992
ORF1ab/nsp31634C1634VTGTGTG11B.10.000009
ORF1ab/nsp31634C1634YtGttAt11B.10.000009
ORF1ab/nsp31634C1634del2tGTt--11B.10.000009
ORF1ab/nsp31634C1634GTgtGgt11B.10.000009
ORF1ab/nsp31634C1634CtgTtgC11B.10.000009
ORF1ab/nsp31634C1634WtgTtgG11B.10.000009
ORF1ab/nsp31634C1634StGttCt11B.10.000009
ORF1ab/nsp31634C1634FtGttTt11B.10.000009
ORF1ab/nsp31634C1634XtgTtgA11B.10.000009
ORF1ab/nsp31634C1634RTgtCgt11B.1.10.000018
ORF1ab/nsp31634C1634StGttCt11B.1.10.000018
ORF1ab/nsp31634C1634FtGttTt11B.1.10.000018
ORF1ab/nsp31634C1634del1Tgt-gt11B.1.10.000018
ORF1ab/nsp31634C1634GTgtGgt11B.1.10.000018
ORF1ab/nsp31634C1634GTgtGgt11B.1.1.1940.00495
ORF1ab/nsp31634C1634delTGT---11B.1.1.2360.006897
ORF1ab/nsp31634C1634CtgTtgC11B.1.1.280.000311
ORF1ab/nsp31634C1634CtgTtgC11B.1.1.2850.006536
ORF1ab/nsp31634C1634delTGT---11B.1.1.3060.000438
ORF1ab/nsp31634C1634delTGT---11B.1.1.370.000193
ORF1ab/nsp31634C1634StGttCt11B.1.1.3720.000689
ORF1ab/nsp31634C1634delTGT---11B.1.1.460.004367
ORF1ab/nsp31634C1634FtGttTt11B.1.1.500.000679
ORF1ab/nsp31634C1634WtgTtgG11B.1.1.70.000001
ORF1ab/nsp31634C1634STgtAgt11B.1.1.70.000001
ORF1ab/nsp31634C1634RTgtCgt11B.1.1.70.000001
ORF1ab/nsp31634C1634delTGT---11B.1.1.700.000341
ORF1ab/nsp31634C1634delTGT---11B.1.1610.017241
ORF1ab/nsp31634C1634GTgtGgt11B.1.1770.000013
ORF1ab/nsp31634C1634StGttCt11B.1.1770.000013
ORF1ab/nsp31634C1634delTGT---11B.1.177.160.000664
ORF1ab/nsp31634C1634delTGT---11B.1.177.180.00116
ORF1ab/nsp31634C1634delTGT---11B.1.177.190.001431
ORF1ab/nsp31634C1634delTGT---11B.1.177.510.004566
ORF1ab/nsp31634C1634delTGT---11B.1.177.560.000668
ORF1ab/nsp31634C1634delTGT---11B.1.177.630.002703
ORF1ab/nsp31634C1634del2tGTt--11B.1.177.890.02439
ORF1ab/nsp31634C1634WtgTtgG11B.1.20.000009
ORF1ab/nsp31634C1634del2TGt--t11B.1.20.000009
ORF1ab/nsp31634C1634CtgTtgC11B.1.20.000009
ORF1ab/nsp31634C1634RTgtCgt11B.1.2430.00007
ORF1ab/nsp31634C1634KTGTAAG11B.1.2580.000067
ORF1ab/nsp31634C1634delTGT---11B.1.351.30.000876
ORF1ab/nsp31634C1634delTGT---11B.1.360.000146
ORF1ab/nsp31634C1634XtgTtgA11B.1.36.160.001425
ORF1ab/nsp31634C1634delTGT---11B.1.36.380.001642
ORF1ab/nsp31634C1634StGttCt11B.1.4160.001269
ORF1ab/nsp31634C1634CtgTtgC11B.1.4290.000024
ORF1ab/nsp31634C1634CtgTtgC11B.1.4970.000315
ORF1ab/nsp31634C1634GTgTGgA11B.1.5250.000113
ORF1ab/nsp31634C1634CtgTtgC11B.1.5260.000024
ORF1ab/nsp31634C1634FtGttTt11B.1.5960.000087
ORF1ab/nsp31634C1634GTgtGgt11B.1.6060.006024
ORF1ab/nsp31634C1634delTGT---11B.1.617.20.000004
ORF1ab/nsp31634C1634del2TGt--t11B.1.617.20.000004
ORF1ab/nsp31634C1634delTGT---11B.1.6210.000089
ORF1ab/nsp31634C1634CtgTtgC11B.1.6320.006711
ORF1ab/nsp31634C1634XtGTtAA11C.350.000774
ORF1ab/nsp31634C1634PTGtCCt11C.360.000911
ORF1ab/nsp31634C1634RTgtCgt11C.37.10.002618
ORF1ab/nsp31634C1634delTGT---11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.