CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1634

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31634C1634delC2452deldelTGT---10810817619-7621
ORF1ab/nsp31634C1634CC2452CsyntgTtgC969617619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgtCgt1380.6153857619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgTCgA1330.2307697619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgTAgA1310.07692317619-7621
ORF1ab/nsp31634C1634RC2452RnonsynTgTAgG1310.07692317619-7621
ORF1ab/nsp31634C1634SC2452SnonsyntGttCt1170.6363647619-7621
ORF1ab/nsp31634C1634SC2452SnonsynTgtAgt1140.3636367619-7621
ORF1ab/nsp31634C1634FC2452FnonsyntGttTt101017619-7621
ORF1ab/nsp31634C1634GC2452GnonsynTgtGgt650.8333337619-7621
ORF1ab/nsp31634C1634GC2452GnonsynTgTGgA610.1666677619-7621
ORF1ab/nsp31634C1634WC2452WnonsyntgTtgG5517619-7621
ORF1ab/nsp31634C1634XC2452XnonsyntgTtgA540.87619-7621
ORF1ab/nsp31634C1634XC2452XnonsyntGTtAA510.27619-7621
ORF1ab/nsp31634C1634YC2452YnonsyntGttAt4417619-7621
ORF1ab/nsp31634C1634del2C2452del2delTGt--t420.57619-7621
ORF1ab/nsp31634C1634del2C2452del2deltGTt--420.57619-7621
ORF1ab/nsp31634C1634LC2452LnonsyntGTtTG320.6666677619-7621
ORF1ab/nsp31634C1634IC2452InonsynTGtATt320.6666677619-7621
ORF1ab/nsp31634C1634IC2452InonsynTGTATA310.3333337619-7621
ORF1ab/nsp31634C1634LC2452LnonsyntGTtTA310.3333337619-7621
ORF1ab/nsp31634C1634MC2452MnonsynTGTATG1117619-7621
ORF1ab/nsp31634C1634VC2452VnonsynTGTGTG1117619-7621
ORF1ab/nsp31634C1634KC2452KnonsynTGTAAG1117619-7621
ORF1ab/nsp31634C1634del1C2452del1delTgt-gt1117619-7621
ORF1ab/nsp31634C1634PC2452PnonsynTGtCCt1117619-7621

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31634C1634delTGT---108108All0.000021
ORF1ab/nsp31634C1634CtgTtgC9696All0.000018
ORF1ab/nsp31634C1634delTGT---5151B.1.1.70.000046
ORF1ab/nsp31634C1634CtgTtgC3838B.6.11
ORF1ab/nsp31634C1634CtgTtgC1717B.1.1.70.000015
ORF1ab/nsp31634C1634RTgtCgt813All0.000002
ORF1ab/nsp31634C1634RTgTCgA313All0.000001
ORF1ab/nsp31634C1634RTgTAgA113All0
ORF1ab/nsp31634C1634RTgTAgG113All0
ORF1ab/nsp31634C1634StGttCt711All0.000001
ORF1ab/nsp31634C1634STgtAgt411All0.000001
ORF1ab/nsp31634C1634FtGttTt1010All0.000002
ORF1ab/nsp31634C1634delTGT---1010B.1.1770.000132
ORF1ab/nsp31634C1634CtgTtgC99AY.250.000054
ORF1ab/nsp31634C1634GTgtGgt56All0.000001
ORF1ab/nsp31634C1634GTgTGgA16All0
ORF1ab/nsp31634C1634delTGT---66AY.40.000009
ORF1ab/nsp31634C1634WtgTtgG55All0.000001
ORF1ab/nsp31634C1634XtgTtgA45All0.000001
ORF1ab/nsp31634C1634XtGTtAA15All0
ORF1ab/nsp31634C1634CtgTtgC55B.1.617.20.000019
ORF1ab/nsp31634C1634YtGttAt44All0.000001
ORF1ab/nsp31634C1634del2TGt--t24All0
ORF1ab/nsp31634C1634del2tGTt--24All0
ORF1ab/nsp31634C1634RTgTCgA34B.10.000027
ORF1ab/nsp31634C1634RTgtCgt14B.10.000009
ORF1ab/nsp31634C1634FtGttTt330.166667
ORF1ab/nsp31634C1634ITGtATt230.111111
ORF1ab/nsp31634C1634LtGTtTG230.111111
ORF1ab/nsp31634C1634LtGTtTA130.055556
ORF1ab/nsp31634C1634ITGTATA130.055556
ORF1ab/nsp31634C1634ITGtATt23All0
ORF1ab/nsp31634C1634LtGTtTG23All0
ORF1ab/nsp31634C1634LtGTtTA13All0
ORF1ab/nsp31634C1634ITGTATA13All0
ORF1ab/nsp31634C1634delTGT---33AY.250.000018
ORF1ab/nsp31634C1634delTGT---33B.10.000027
ORF1ab/nsp31634C1634FtGttTt33B.1.1.70.000003
ORF1ab/nsp31634C1634CtgTtgC33B.1.2350.007557
ORF1ab/nsp31634C1634CtgTtgC33B.60.00273
ORF1ab/nsp31634C1634WtgTtgG220.111111
ORF1ab/nsp31634C1634STgtAgt220.111111
ORF1ab/nsp31634C1634RTgTAgA120.055556
ORF1ab/nsp31634C1634RTgTAgG120.055556
ORF1ab/nsp31634C1634delTGT---22AY.1200.000074
ORF1ab/nsp31634C1634CtgTtgC22AY.430.000009
ORF1ab/nsp31634C1634CtgTtgC22AY.700.000417
ORF1ab/nsp31634C1634CtgTtgC22AY.920.000575
ORF1ab/nsp31634C1634delTGT---22B.1.177.540.001213
ORF1ab/nsp31634C1634delTGT---22B.1.177.570.000562
ORF1ab/nsp31634C1634StGttCt22B.1.3980.005952
ORF1ab/nsp31634C1634MTGTATG110.055556
ORF1ab/nsp31634C1634XtgTtgA110.055556
ORF1ab/nsp31634C1634VTGTGTG11All0
ORF1ab/nsp31634C1634KTGTAAG11All0
ORF1ab/nsp31634C1634del1Tgt-gt11All0
ORF1ab/nsp31634C1634PTGtCCt11All0
ORF1ab/nsp31634C1634MTGTATG11All0
ORF1ab/nsp31634C1634CtgTtgC11AY.1030.000006
ORF1ab/nsp31634C1634CtgTtgC11AY.1180.000063
ORF1ab/nsp31634C1634RTgtCgt11AY.120.000316
ORF1ab/nsp31634C1634STgtAgt11AY.120.10.000321
ORF1ab/nsp31634C1634delTGT---11AY.190.00114
ORF1ab/nsp31634C1634CtgTtgC11AY.200.000039
ORF1ab/nsp31634C1634delTGT---11AY.240.000431
ORF1ab/nsp31634C1634XtgTtgA11AY.250.000006
ORF1ab/nsp31634C1634YtGttAt11AY.30.00001
ORF1ab/nsp31634C1634delTGT---11AY.330.000067
ORF1ab/nsp31634C1634CtgTtgC11AY.390.000025
ORF1ab/nsp31634C1634RTgtCgt11AY.40.000002
ORF1ab/nsp31634C1634delTGT---11AY.4.50.000107
ORF1ab/nsp31634C1634YtGttAt11AY.430.000004
ORF1ab/nsp31634C1634CtgTtgC11AY.440.000006
ORF1ab/nsp31634C1634delTGT---11AY.440.000006
ORF1ab/nsp31634C1634RTgtCgt11AY.46.20.000635
ORF1ab/nsp31634C1634delTGT---11AY.46.20.000635
ORF1ab/nsp31634C1634CtgTtgC11AY.50.000021
ORF1ab/nsp31634C1634delTGT---11AY.50.000021
ORF1ab/nsp31634C1634delTGT---11AY.60.000041
ORF1ab/nsp31634C1634delTGT---11AY.660.00107
ORF1ab/nsp31634C1634YtGttAt11AY.700.000209
ORF1ab/nsp31634C1634delTGT---11AY.720.001361
ORF1ab/nsp31634C1634CtgTtgC11AY.770.001127
ORF1ab/nsp31634C1634delTGT---11AY.810.001992
ORF1ab/nsp31634C1634VTGTGTG11B.10.000009
ORF1ab/nsp31634C1634YtGttAt11B.10.000009
ORF1ab/nsp31634C1634del2tGTt--11B.10.000009
ORF1ab/nsp31634C1634GTgtGgt11B.10.000009
ORF1ab/nsp31634C1634CtgTtgC11B.10.000009
ORF1ab/nsp31634C1634WtgTtgG11B.10.000009
ORF1ab/nsp31634C1634StGttCt11B.10.000009
ORF1ab/nsp31634C1634FtGttTt11B.10.000009
ORF1ab/nsp31634C1634XtgTtgA11B.10.000009
ORF1ab/nsp31634C1634RTgtCgt11B.1.10.000018
ORF1ab/nsp31634C1634StGttCt11B.1.10.000018
ORF1ab/nsp31634C1634FtGttTt11B.1.10.000018
ORF1ab/nsp31634C1634del1Tgt-gt11B.1.10.000018
ORF1ab/nsp31634C1634GTgtGgt11B.1.10.000018
ORF1ab/nsp31634C1634GTgtGgt11B.1.1.1940.00495
ORF1ab/nsp31634C1634delTGT---11B.1.1.2360.006897
ORF1ab/nsp31634C1634CtgTtgC11B.1.1.280.000311
ORF1ab/nsp31634C1634CtgTtgC11B.1.1.2850.006536
ORF1ab/nsp31634C1634delTGT---11B.1.1.3060.000438
ORF1ab/nsp31634C1634delTGT---11B.1.1.370.000193
ORF1ab/nsp31634C1634StGttCt11B.1.1.3720.000689
ORF1ab/nsp31634C1634delTGT---11B.1.1.460.004367
ORF1ab/nsp31634C1634FtGttTt11B.1.1.500.000679
ORF1ab/nsp31634C1634WtgTtgG11B.1.1.70.000001
ORF1ab/nsp31634C1634STgtAgt11B.1.1.70.000001
ORF1ab/nsp31634C1634RTgtCgt11B.1.1.70.000001
ORF1ab/nsp31634C1634delTGT---11B.1.1.700.000341
ORF1ab/nsp31634C1634delTGT---11B.1.1610.017241
ORF1ab/nsp31634C1634GTgtGgt11B.1.1770.000013
ORF1ab/nsp31634C1634StGttCt11B.1.1770.000013
ORF1ab/nsp31634C1634delTGT---11B.1.177.160.000664
ORF1ab/nsp31634C1634delTGT---11B.1.177.180.00116
ORF1ab/nsp31634C1634delTGT---11B.1.177.190.001431
ORF1ab/nsp31634C1634delTGT---11B.1.177.510.004566
ORF1ab/nsp31634C1634delTGT---11B.1.177.560.000668
ORF1ab/nsp31634C1634delTGT---11B.1.177.630.002703
ORF1ab/nsp31634C1634del2tGTt--11B.1.177.890.02439
ORF1ab/nsp31634C1634WtgTtgG11B.1.20.000009
ORF1ab/nsp31634C1634del2TGt--t11B.1.20.000009
ORF1ab/nsp31634C1634CtgTtgC11B.1.20.000009
ORF1ab/nsp31634C1634RTgtCgt11B.1.2430.00007
ORF1ab/nsp31634C1634KTGTAAG11B.1.2580.000067
ORF1ab/nsp31634C1634delTGT---11B.1.351.30.000876
ORF1ab/nsp31634C1634delTGT---11B.1.360.000146
ORF1ab/nsp31634C1634XtgTtgA11B.1.36.160.001425
ORF1ab/nsp31634C1634delTGT---11B.1.36.380.001642
ORF1ab/nsp31634C1634StGttCt11B.1.4160.001269
ORF1ab/nsp31634C1634CtgTtgC11B.1.4290.000024
ORF1ab/nsp31634C1634CtgTtgC11B.1.4970.000315
ORF1ab/nsp31634C1634GTgTGgA11B.1.5250.000113
ORF1ab/nsp31634C1634CtgTtgC11B.1.5260.000024
ORF1ab/nsp31634C1634FtGttTt11B.1.5960.000087
ORF1ab/nsp31634C1634GTgtGgt11B.1.6060.006024
ORF1ab/nsp31634C1634delTGT---11B.1.617.20.000004
ORF1ab/nsp31634C1634del2TGt--t11B.1.617.20.000004
ORF1ab/nsp31634C1634delTGT---11B.1.6210.000089
ORF1ab/nsp31634C1634CtgTtgC11B.1.6320.006711
ORF1ab/nsp31634C1634XtGTtAA11C.350.000774
ORF1ab/nsp31634C1634PTGtCCt11C.360.000911
ORF1ab/nsp31634C1634RTgtCgt11C.37.10.002618
ORF1ab/nsp31634C1634delTGT---11Q.10.000126