CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1627 & Codon = tgT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31627C1627CC2445CsyntgCtgT117071170717598-7600

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31627C1627CtgCtgT1170711707All0.002239
ORF1ab/nsp31627C1627CtgCtgT45534553B.1.1.70.004076
ORF1ab/nsp31627C1627CtgCtgT11231123AY.120.10.360514
ORF1ab/nsp31627C1627CtgCtgT670670B.1.617.20.002523
ORF1ab/nsp31627C1627CtgCtgT595595B.1.5880.541401
ORF1ab/nsp31627C1627CtgCtgT579579AY.980.045738
ORF1ab/nsp31627C1627CtgCtgT430430AY.40.000669
ORF1ab/nsp31627C1627CtgCtgT243243B.1.20.00214
ORF1ab/nsp31627C1627CtgCtgT180180AY.39.10.00713
ORF1ab/nsp31627C1627CtgCtgT175175AY.430.000775
ORF1ab/nsp31627C1627CtgCtgT168168D.30.994083
ORF1ab/nsp31627C1627CtgCtgT168168N.91
ORF1ab/nsp31627C1627CtgCtgT125125AY.30.001243
ORF1ab/nsp31627C1627CtgCtgT116116B.10.001063
ORF1ab/nsp31627C1627CtgCtgT108108AY.440.000657
ORF1ab/nsp31627C1627CtgCtgT103103AY.1030.00064
ORF1ab/nsp31627C1627CtgCtgT9393B.1.4270.004696
ORF1ab/nsp31627C1627CtgCtgT9191AY.50.001879
ORF1ab/nsp31627C1627CtgCtgT8989B.1.10.001615
ORF1ab/nsp31627C1627CtgCtgT8585B.1.2210.006038
ORF1ab/nsp31627C1627CtgCtgT8383AY.46.50.016468
ORF1ab/nsp31627C1627CtgCtgT8181AY.250.000487
ORF1ab/nsp31627C1627CtgCtgT8181B.1.1.2140.004492
ORF1ab/nsp31627C1627CtgCtgT7979AY.750.004426
ORF1ab/nsp31627C1627CtgCtgT7676B.1.1770.001001
ORF1ab/nsp31627C1627CtgCtgT7676P.10.001197
ORF1ab/nsp31627C1627CtgCtgT6363B.1.4290.001482
ORF1ab/nsp31627C1627CtgCtgT6060AY.1000.00276
ORF1ab/nsp31627C1627CtgCtgT6060B.1.5260.00141
ORF1ab/nsp31627C1627CtgCtgT5757B.1.177.120.008647
ORF1ab/nsp31627C1627CtgCtgT5353B.1.2400.011425
ORF1ab/nsp31627C1627CtgCtgT3939B.1.1600.001216
ORF1ab/nsp31627C1627CtgCtgT3838B.1.1.5190.001509
ORF1ab/nsp31627C1627CtgCtgT3838B.1.5950.009916
ORF1ab/nsp31627C1627CtgCtgT3737B.1.1.3280.627119
ORF1ab/nsp31627C1627CtgCtgT3131B.1.177.810.005869
ORF1ab/nsp31627C1627CtgCtgT2929AY.230.002023
ORF1ab/nsp31627C1627CtgCtgT2727AY.1200.001004
ORF1ab/nsp31627C1627CtgCtgT2626B.1.588.11
ORF1ab/nsp31627C1627CtgCtgT2525B.1.177.540.015161
ORF1ab/nsp31627C1627CtgCtgT2323B.1.1040.084871
ORF1ab/nsp31627C1627CtgCtgT2222B.1.3510.000654
ORF1ab/nsp31627C1627CtgCtgT2121AY.390.000519
ORF1ab/nsp31627C1627CtgCtgT2020AY.460.002082
ORF1ab/nsp31627C1627CtgCtgT2020AY.46.60.001444
ORF1ab/nsp31627C1627CtgCtgT1919AY.1020.000504
ORF1ab/nsp31627C1627CtgCtgT1919AY.200.000738
ORF1ab/nsp31627C1627CtgCtgT1919B.1.1.10.006207
ORF1ab/nsp31627C1627CtgCtgT1818B.1.5250.002037
ORF1ab/nsp31627C1627CtgCtgT1717AY.470.000529
ORF1ab/nsp31627C1627CtgCtgT1717B.1.360.00248
ORF1ab/nsp31627C1627CtgCtgT1616AY.260.000453
ORF1ab/nsp31627C1627CtgCtgT1515AY.4.20.000325
ORF1ab/nsp31627C1627CtgCtgT1515Q.80.002474
ORF1ab/nsp31627C1627CtgCtgT1313AY.98.10.00063
ORF1ab/nsp31627C1627CtgCtgT1313B.1.1.330.005471
ORF1ab/nsp31627C1627CtgCtgT1212A.210.033241
ORF1ab/nsp31627C1627CtgCtgT1212AY.330.000801
ORF1ab/nsp31627C1627CtgCtgT1212B.1.1.3060.005261
ORF1ab/nsp31627C1627CtgCtgT1212B.1.351.50.007194
ORF1ab/nsp31627C1627CtgCtgT1212B.1.5750.003641
ORF1ab/nsp31627C1627CtgCtgT1212C.370.001393
ORF1ab/nsp31627C1627CtgCtgT1111AY.420.000443
ORF1ab/nsp31627C1627CtgCtgT1111B.1.1080.063953
ORF1ab/nsp31627C1627CtgCtgT1111P.1.130.009883
ORF1ab/nsp31627C1627CtgCtgT1010AY.360.001482
ORF1ab/nsp31627C1627CtgCtgT1010AY.9.20.000367
ORF1ab/nsp31627C1627CtgCtgT1010B.1.1.1410.020121
ORF1ab/nsp31627C1627CtgCtgT1010B.1.1.280.003112
ORF1ab/nsp31627C1627CtgCtgT1010P.20.001866
ORF1ab/nsp31627C1627CtgCtgT99AY.1190.000318
ORF1ab/nsp31627C1627CtgCtgT99AY.290.000142
ORF1ab/nsp31627C1627CtgCtgT99AY.46.20.005718
ORF1ab/nsp31627C1627CtgCtgT99AY.7.10.001014
ORF1ab/nsp31627C1627CtgCtgT99AY.9.10.000754
ORF1ab/nsp31627C1627CtgCtgT99B.1.1.470.048128
ORF1ab/nsp31627C1627CtgCtgT99B.1.5670.03
ORF1ab/nsp31627C1627CtgCtgT99B.1.6210.000797
ORF1ab/nsp31627C1627CtgCtgT99P.1.10.002859
ORF1ab/nsp31627C1627CtgCtgT88AY.540.000763
ORF1ab/nsp31627C1627CtgCtgT88B.1.1.1870.070796
ORF1ab/nsp31627C1627CtgCtgT88B.1.1.3930.888889
ORF1ab/nsp31627C1627CtgCtgT88B.1.4000.003432
ORF1ab/nsp31627C1627CtgCtgT88B.1.4990.008403
ORF1ab/nsp31627C1627CtgCtgT88B.1.6370.000585
ORF1ab/nsp31627C1627CtgCtgT77AY.1060.002344
ORF1ab/nsp31627C1627CtgCtgT77AY.90.000473
ORF1ab/nsp31627C1627CtgCtgT77B0.000895
ORF1ab/nsp31627C1627CtgCtgT77B.1.1110.008226
ORF1ab/nsp31627C1627CtgCtgT77B.1.177.820.003341
ORF1ab/nsp31627C1627CtgCtgT77B.1.36.290.003621
ORF1ab/nsp31627C1627CtgCtgT77D.20.000525
ORF1ab/nsp31627C1627CtgCtgT66AY.140.000528
ORF1ab/nsp31627C1627CtgCtgT66B.1.1.3890.036364
ORF1ab/nsp31627C1627CtgCtgT66B.1.2340.000792
ORF1ab/nsp31627C1627CtgCtgT66B.1.3110.001647
ORF1ab/nsp31627C1627CtgCtgT55AY.3.10.000426
ORF1ab/nsp31627C1627CtgCtgT55AY.840.002187
ORF1ab/nsp31627C1627CtgCtgT55AY.99.20.000461
ORF1ab/nsp31627C1627CtgCtgT55B.1.1.250.002843
ORF1ab/nsp31627C1627CtgCtgT55B.1.2580.000333
ORF1ab/nsp31627C1627CtgCtgT55B.1.5960.000436
ORF1ab/nsp31627C1627CtgCtgT55P.1.140.000239
ORF1ab/nsp31627C1627CtgCtgT55P.1.150.001162
ORF1ab/nsp31627C1627CtgCtgT55Q.10.000632
ORF1ab/nsp31627C1627CtgCtgT44AY.1170.000338
ORF1ab/nsp31627C1627CtgCtgT44AY.1180.000251
ORF1ab/nsp31627C1627CtgCtgT44AY.1210.000541
ORF1ab/nsp31627C1627CtgCtgT44AY.4.50.00043
ORF1ab/nsp31627C1627CtgCtgT44AY.5.40.001107
ORF1ab/nsp31627C1627CtgCtgT44AY.610.000419
ORF1ab/nsp31627C1627CtgCtgT44AY.620.001743
ORF1ab/nsp31627C1627CtgCtgT44B.1.1.3170.001647
ORF1ab/nsp31627C1627CtgCtgT44B.1.177.480.0125
ORF1ab/nsp31627C1627CtgCtgT44B.1.36.380.006568
ORF1ab/nsp31627C1627CtgCtgT44B.1.3960.002823
ORF1ab/nsp31627C1627CtgCtgT44B.1.6090.001918
ORF1ab/nsp31627C1627CtgCtgT33AY.5.30.001012
ORF1ab/nsp31627C1627CtgCtgT33AY.630.001161
ORF1ab/nsp31627C1627CtgCtgT33AY.930.000819
ORF1ab/nsp31627C1627CtgCtgT33B.1.1.2220.000612
ORF1ab/nsp31627C1627CtgCtgT33B.1.1.2770.002276
ORF1ab/nsp31627C1627CtgCtgT33B.1.177.330.004934
ORF1ab/nsp31627C1627CtgCtgT33B.1.177.460.002755
ORF1ab/nsp31627C1627CtgCtgT33B.1.177.70.000495
ORF1ab/nsp31627C1627CtgCtgT33B.1.2430.000209
ORF1ab/nsp31627C1627CtgCtgT33B.1.351.20.000908
ORF1ab/nsp31627C1627CtgCtgT33B.1.3620.004622
ORF1ab/nsp31627C1627CtgCtgT33B.1.438.10.000322
ORF1ab/nsp31627C1627CtgCtgT33B.1.466.20.001174
ORF1ab/nsp31627C1627CtgCtgT33B.1.6230.001609
ORF1ab/nsp31627C1627CtgCtgT33B.6.60.002667
ORF1ab/nsp31627C1627CtgCtgT22A.23.10.001408
ORF1ab/nsp31627C1627CtgCtgT22AY.1080.002205
ORF1ab/nsp31627C1627CtgCtgT22AY.160.000759
ORF1ab/nsp31627C1627CtgCtgT22AY.240.000862
ORF1ab/nsp31627C1627CtgCtgT22AY.29.10.000441
ORF1ab/nsp31627C1627CtgCtgT22AY.4.40.000818
ORF1ab/nsp31627C1627CtgCtgT22AY.450.000243
ORF1ab/nsp31627C1627CtgCtgT22AY.46.40.000329
ORF1ab/nsp31627C1627CtgCtgT22AY.480.00093
ORF1ab/nsp31627C1627CtgCtgT22AY.590.001059
ORF1ab/nsp31627C1627CtgCtgT22AY.650.001066
ORF1ab/nsp31627C1627CtgCtgT22AY.850.000854
ORF1ab/nsp31627C1627CtgCtgT22B.1.1.1920.004619
ORF1ab/nsp31627C1627CtgCtgT22B.1.1.3120.003824
ORF1ab/nsp31627C1627CtgCtgT22B.1.1.3750.02381
ORF1ab/nsp31627C1627CtgCtgT22B.1.1.50.016667
ORF1ab/nsp31627C1627CtgCtgT22B.1.160.190.071429
ORF1ab/nsp31627C1627CtgCtgT22B.1.177.320.002699
ORF1ab/nsp31627C1627CtgCtgT22B.1.177.520.003515
ORF1ab/nsp31627C1627CtgCtgT22B.1.214.20.001199
ORF1ab/nsp31627C1627CtgCtgT22B.1.2650.002541
ORF1ab/nsp31627C1627CtgCtgT22B.1.3460.002621
ORF1ab/nsp31627C1627CtgCtgT22B.1.36.160.002849
ORF1ab/nsp31627C1627CtgCtgT22B.1.36.270.001527
ORF1ab/nsp31627C1627CtgCtgT22B.1.3690.00057
ORF1ab/nsp31627C1627CtgCtgT22B.1.5640.000852
ORF1ab/nsp31627C1627CtgCtgT22B.1.5820.000981
ORF1ab/nsp31627C1627CtgCtgT22B.1.617.10.000258
ORF1ab/nsp31627C1627CtgCtgT22B.1.621.10.001012
ORF1ab/nsp31627C1627CtgCtgT22B.1.930.001867
ORF1ab/nsp31627C1627CtgCtgT22B.4.10.037736
ORF1ab/nsp31627C1627CtgCtgT22C.160.002121
ORF1ab/nsp31627C1627CtgCtgT22N.60.014184
ORF1ab/nsp31627C1627CtgCtgT22P.1.160.000748
ORF1ab/nsp31627C1627CtgCtgT22P.1.20.002312
ORF1ab/nsp31627C1627CtgCtgT110.055556
ORF1ab/nsp31627C1627CtgCtgT11A.2.50.000499
ORF1ab/nsp31627C1627CtgCtgT11A.50.001923
ORF1ab/nsp31627C1627CtgCtgT11AP.10.001502
ORF1ab/nsp31627C1627CtgCtgT11AU.30.00211
ORF1ab/nsp31627C1627CtgCtgT11AY.1140.000231
ORF1ab/nsp31627C1627CtgCtgT11AY.116.10.000311
ORF1ab/nsp31627C1627CtgCtgT11AY.120.000316
ORF1ab/nsp31627C1627CtgCtgT11AY.120.2.10.000498
ORF1ab/nsp31627C1627CtgCtgT11AY.16.10.00047
ORF1ab/nsp31627C1627CtgCtgT11AY.270.000065
ORF1ab/nsp31627C1627CtgCtgT11AY.300.000396
ORF1ab/nsp31627C1627CtgCtgT11AY.340.000097
ORF1ab/nsp31627C1627CtgCtgT11AY.34.10.00051
ORF1ab/nsp31627C1627CtgCtgT11AY.39.20.001541
ORF1ab/nsp31627C1627CtgCtgT11AY.4.10.000737
ORF1ab/nsp31627C1627CtgCtgT11AY.4.2.10.000149
ORF1ab/nsp31627C1627CtgCtgT11AY.4.30.000842
ORF1ab/nsp31627C1627CtgCtgT11AY.400.000964
ORF1ab/nsp31627C1627CtgCtgT11AY.410.000294
ORF1ab/nsp31627C1627CtgCtgT11AY.510.000909
ORF1ab/nsp31627C1627CtgCtgT11AY.530.000288
ORF1ab/nsp31627C1627CtgCtgT11AY.570.000656
ORF1ab/nsp31627C1627CtgCtgT11AY.60.000041
ORF1ab/nsp31627C1627CtgCtgT11AY.680.000274
ORF1ab/nsp31627C1627CtgCtgT11AY.70.000196
ORF1ab/nsp31627C1627CtgCtgT11AY.75.10.00018
ORF1ab/nsp31627C1627CtgCtgT11AY.780.001541
ORF1ab/nsp31627C1627CtgCtgT11AY.920.000287
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.1740.003378
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.2160.00089
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.2210.010101
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.2430.004082
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.2630.001558
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.3180.000302
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.3370.003597
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.3540.004386
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.3690.000446
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.3720.000689
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.390.00051
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.4010.066667
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.4110.014706
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.4160.000905
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.4300.041667
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.5070.008696
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.5250.005464
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.5260.003546
ORF1ab/nsp31627C1627CtgCtgT11B.1.1.610.008772
ORF1ab/nsp31627C1627CtgCtgT11B.1.1280.000635
ORF1ab/nsp31627C1627CtgCtgT11B.1.160.260.002421
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.200.001517
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.210.000076
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.230.003236
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.40.000211
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.410.0025
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.440.000519
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.530.002392
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.60.000977
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.600.000218
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.720.00339
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.730.000566
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.750.001041
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.790.002342
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.860.000183
ORF1ab/nsp31627C1627CtgCtgT11B.1.177.90.001332
ORF1ab/nsp31627C1627CtgCtgT11B.1.1900.01
ORF1ab/nsp31627C1627CtgCtgT11B.1.2140.003663
ORF1ab/nsp31627C1627CtgCtgT11B.1.2390.001221
ORF1ab/nsp31627C1627CtgCtgT11B.1.2470.014925
ORF1ab/nsp31627C1627CtgCtgT11B.1.258.110.000396
ORF1ab/nsp31627C1627CtgCtgT11B.1.258.170.000104
ORF1ab/nsp31627C1627CtgCtgT11B.1.2600.003344
ORF1ab/nsp31627C1627CtgCtgT11B.1.2790.000514
ORF1ab/nsp31627C1627CtgCtgT11B.1.3050.002151
ORF1ab/nsp31627C1627CtgCtgT11B.1.3250.006897
ORF1ab/nsp31627C1627CtgCtgT11B.1.3290.000608
ORF1ab/nsp31627C1627CtgCtgT11B.1.3560.001727
ORF1ab/nsp31627C1627CtgCtgT11B.1.36.180.00042
ORF1ab/nsp31627C1627CtgCtgT11B.1.36.360.000602
ORF1ab/nsp31627C1627CtgCtgT11B.1.3660.004878
ORF1ab/nsp31627C1627CtgCtgT11B.1.3670.000792
ORF1ab/nsp31627C1627CtgCtgT11B.1.3710.001122
ORF1ab/nsp31627C1627CtgCtgT11B.1.3800.006623
ORF1ab/nsp31627C1627CtgCtgT11B.1.4360.001029
ORF1ab/nsp31627C1627CtgCtgT11B.1.4380.006536
ORF1ab/nsp31627C1627CtgCtgT11B.1.4590.004082
ORF1ab/nsp31627C1627CtgCtgT11B.1.4740.001901
ORF1ab/nsp31627C1627CtgCtgT11B.1.5030.002488
ORF1ab/nsp31627C1627CtgCtgT11B.1.5510.00129
ORF1ab/nsp31627C1627CtgCtgT11B.1.564.10.001577
ORF1ab/nsp31627C1627CtgCtgT11B.1.5770.000687
ORF1ab/nsp31627C1627CtgCtgT11B.1.5800.004065
ORF1ab/nsp31627C1627CtgCtgT11B.1.5940.03125
ORF1ab/nsp31627C1627CtgCtgT11B.1.5990.00365
ORF1ab/nsp31627C1627CtgCtgT11B.550.00295
ORF1ab/nsp31627C1627CtgCtgT11B.60.00091
ORF1ab/nsp31627C1627CtgCtgT11C.110.010638
ORF1ab/nsp31627C1627CtgCtgT11C.360.000911
ORF1ab/nsp31627C1627CtgCtgT11C.36.30.000567
ORF1ab/nsp31627C1627CtgCtgT11N.10.016949
ORF1ab/nsp31627C1627CtgCtgT11P.1.170.000162
ORF1ab/nsp31627C1627CtgCtgT11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.