CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1615 | S1615S | S2433S | syn | tcC | tcT | 13404 | 12660 | 0.944494 | 7562-7564 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 12660 | 13404 | All | 0.002421 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3728 | 3739 | B.1.1.7 | 0.003337 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1306 | 1306 | AY.9 | 0.088279 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1116 | 1116 | B.1.367 | 0.884311 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 812 | 813 | AY.44 | 0.004942 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 590 | 591 | AY.43 | 0.002614 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 576 | 585 | AY.4 | 0.000896 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 339 | 340 | B.1.617.2 | 0.001276 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 244 | 244 | B.1.177.81 | 0.046195 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 195 | 220 | AY.103 | 0.001211 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 210 | 210 | AY.42 | 0.008448 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 195 | 204 | B.1 | 0.001786 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 177 | 177 | B.1.239 | 0.216117 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 176 | 176 | B.1.177 | 0.002317 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 166 | 173 | B.1.2 | 0.001462 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 154 | 156 | P.1 | 0.002426 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 137 | 137 | AY.6 | 0.005635 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 113 | 118 | AY.25 | 0.00068 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 117 | 117 | B.1.438.1 | 0.01255 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 107 | 107 | AY.3.1 | 0.009123 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 104 | 106 | AY.100 | 0.004785 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 90 | 90 | Q.1 | 0.011369 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 82 | 82 | B.1.160 | 0.002557 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 80 | 80 | B.1.139 | 0.058651 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 69 | 71 | B.1.1 | 0.001252 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 67 | 67 | B.1.1.176 | 0.029438 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 66 | 66 | AY.23 | 0.004603 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 66 | 66 | B.1.351 | 0.001962 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 66 | 66 | B.1.429 | 0.001553 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 65 | 65 | B.1.621 | 0.005754 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 63 | 63 | AY.4.2 | 0.001366 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 61 | 61 | B.1.637 | 0.004457 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 58 | 58 | B.1.1.338 | 1 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 45 | 45 | B.1.1.519 | 0.001787 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 42 | 43 | AY.120 | 0.001562 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 36 | 38 | AY.3 | 0.000358 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 37 | 37 | B.1.527 | 0.137037 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 33 | 33 | AY.118 | 0.002067 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 30 | 30 | B.1.1.486 | 0.047319 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 27 | 27 | AY.102 | 0.000716 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 27 | 27 | AY.106 | 0.009042 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 25 | 26 | AY.119 | 0.000883 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 25 | 25 | AY.120.1 | 0.008026 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 22 | 25 | AY.47 | 0.000684 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 13 | 24 | AY.26 | 0.000368 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 23 | 23 | AY.29 | 0.000363 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 23 | 23 | B.1.427 | 0.001161 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 22 | 22 | B.1.221 | 0.001563 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 21 | 21 | AY.14 | 0.001848 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 20 | 21 | B.1.526 | 0.00047 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 20 | 20 | AY.98.1 | 0.000969 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 19 | 19 | AY.1 | 0.007519 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 18 | 18 | AY.36 | 0.002668 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 18 | 18 | B.1.517 | 0.007686 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 16 | 17 | AY.33 | 0.001068 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 17 | 17 | B.1.1.525 | 0.092896 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 15 | 16 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 16 | 16 | AZ.5 | 0.05614 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 15 | B.1.525 | 0.000792 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 13 | 14 | AY.13 | 0.002093 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 14 | 14 | AY.16.1 | 0.006579 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 14 | 14 | AY.4.5 | 0.001505 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 14 | 14 | B.1.596 | 0.00122 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 14 | 14 | L.2 | 0.159091 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 13 | 13 | B.1.36.29 | 0.006725 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 12 | 12 | AY.93 | 0.003277 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 10 | 10 | AY.41 | 0.002939 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 9 | 10 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 10 | 10 | B.1.177.33 | 0.016447 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 9 | 9 | AY.7.1 | 0.001014 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 8 | 9 | B.1.1.28 | 0.00249 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 9 | 9 | B.1.177.79 | 0.021077 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 9 | 9 | Q.8 | 0.001484 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 8 | B | 0.000895 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 8 | B.1.258 | 0.000466 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 8 | 8 | B.1.497 | 0.002518 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 8 | 8 | P.1.1 | 0.002541 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 7 | AY.9.1 | 0.000502 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.1.485 | 0.116667 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.177.35 | 0.004838 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.214.2 | 0.004197 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 7 | 7 | B.1.36.7 | 0.028 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 6 | AY.85 | 0.002563 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | A.1 | 0.001409 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 5 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 5 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | B.1.446 | 0.1 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | B.1.1.398 | 0.012903 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | B.1.177.5 | 0.004969 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | B.1.177.87 | 0.002911 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | B.1.333 | 0.042105 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.177.10 | 0.002634 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.289 | 0.007979 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.469 | 0.01083 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.1.289 | 0.004167 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.199 | 0.008264 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 2 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.452 | 0.027397 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.610 | 0.007092 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | P.1.9 | 0.009615 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.238 | 0.014925 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | V.1 | 0.022727 |
ORF1ab/nsp3 | 1615 | S1615S | tcC | tcT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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