CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1615

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31615S1615SS2433SsyntcCtcT13404126600.9444947562-7564
ORF1ab/nsp31615S1615SS2433SsyntcCtcA134047210.05378997562-7564
ORF1ab/nsp31615S1615SS2433SsyntcCtcG13404230.001715917562-7564
ORF1ab/nsp31615S1615PS2433PnonsynTccCcc1351340.9925937562-7564
ORF1ab/nsp31615S1615PS2433PnonsynTcCCcT13510.007407417562-7564
ORF1ab/nsp31615S1615delS2433deldelTCC---10010017562-7564
ORF1ab/nsp31615S1615CS2433CnonsyntCCtGT222217562-7564
ORF1ab/nsp31615S1615FS2433FnonsyntCctTc19180.9473687562-7564
ORF1ab/nsp31615S1615FS2433FnonsyntCCtTT1910.05263167562-7564
ORF1ab/nsp31615S1615YS2433YnonsyntCctAc16150.93757562-7564
ORF1ab/nsp31615S1615YS2433YnonsyntCCtAT1610.06257562-7564
ORF1ab/nsp31615S1615AS2433AnonsynTccGcc111117562-7564
ORF1ab/nsp31615S1615XS2433XnonsyntCCtAA7717562-7564
ORF1ab/nsp31615S1615TS2433TnonsynTccAcc2217562-7564
ORF1ab/nsp31615S1615VS2433VnonsynTCcGTc2217562-7564
ORF1ab/nsp31615S1615QS2433QnonsynTCCCAA2217562-7564
ORF1ab/nsp31615S1615del2S2433del2delTCc--c210.57562-7564
ORF1ab/nsp31615S1615LS2433LnonsynTCcCTc210.57562-7564
ORF1ab/nsp31615S1615LS2433LnonsynTCCCTG210.57562-7564
ORF1ab/nsp31615S1615del2S2433del2deltCCt--210.57562-7564
ORF1ab/nsp31615S1615DS2433DnonsynTCcGAc1117562-7564
ORF1ab/nsp31615S1615WS2433WnonsyntCCtGG1117562-7564

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31615S1615StcCtcT1266013404All0.002421
ORF1ab/nsp31615S1615StcCtcA72113404All0.000138
ORF1ab/nsp31615S1615StcCtcG2313404All0.000004
ORF1ab/nsp31615S1615StcCtcT37283739B.1.1.70.003337
ORF1ab/nsp31615S1615StcCtcG83739B.1.1.70.000007
ORF1ab/nsp31615S1615StcCtcA33739B.1.1.70.000003
ORF1ab/nsp31615S1615StcCtcT13061306AY.90.088279
ORF1ab/nsp31615S1615StcCtcT11161116B.1.3670.884311
ORF1ab/nsp31615S1615StcCtcT812813AY.440.004942
ORF1ab/nsp31615S1615StcCtcA1813AY.440.000006
ORF1ab/nsp31615S1615StcCtcA618618P.30.985646
ORF1ab/nsp31615S1615StcCtcT590591AY.430.002614
ORF1ab/nsp31615S1615StcCtcA1591AY.430.000004
ORF1ab/nsp31615S1615StcCtcT576585AY.40.000896
ORF1ab/nsp31615S1615StcCtcA9585AY.40.000014
ORF1ab/nsp31615S1615StcCtcT339340B.1.617.20.001276
ORF1ab/nsp31615S1615StcCtcA1340B.1.617.20.000004
ORF1ab/nsp31615S1615StcCtcT244244B.1.177.810.046195
ORF1ab/nsp31615S1615StcCtcT195220AY.1030.001211
ORF1ab/nsp31615S1615StcCtcA24220AY.1030.000149
ORF1ab/nsp31615S1615StcCtcG1220AY.1030.000006
ORF1ab/nsp31615S1615StcCtcT210210AY.420.008448
ORF1ab/nsp31615S1615StcCtcT195204B.10.001786
ORF1ab/nsp31615S1615StcCtcA9204B.10.000082
ORF1ab/nsp31615S1615StcCtcT177177B.1.2390.216117
ORF1ab/nsp31615S1615StcCtcT176176B.1.1770.002317
ORF1ab/nsp31615S1615StcCtcT166173B.1.20.001462
ORF1ab/nsp31615S1615StcCtcA7173B.1.20.000062
ORF1ab/nsp31615S1615StcCtcT154156P.10.002426
ORF1ab/nsp31615S1615StcCtcA2156P.10.000032
ORF1ab/nsp31615S1615StcCtcT137137AY.60.005635
ORF1ab/nsp31615S1615PTccCcc134135All0.000026
ORF1ab/nsp31615S1615PTcCCcT1135All0
ORF1ab/nsp31615S1615StcCtcT113118AY.250.00068
ORF1ab/nsp31615S1615StcCtcA3118AY.250.000018
ORF1ab/nsp31615S1615StcCtcG2118AY.250.000012
ORF1ab/nsp31615S1615StcCtcT117117B.1.438.10.01255
ORF1ab/nsp31615S1615StcCtcT107107AY.3.10.009123
ORF1ab/nsp31615S1615StcCtcT104106AY.1000.004785
ORF1ab/nsp31615S1615StcCtcA2106AY.1000.000092
ORF1ab/nsp31615S1615delTCC---100100All0.000019
ORF1ab/nsp31615S1615StcCtcT9090Q.10.011369
ORF1ab/nsp31615S1615StcCtcT8282B.1.1600.002557
ORF1ab/nsp31615S1615StcCtcT8080B.1.1390.058651
ORF1ab/nsp31615S1615StcCtcT6971B.1.10.001252
ORF1ab/nsp31615S1615StcCtcG171B.1.10.000018
ORF1ab/nsp31615S1615StcCtcA171B.1.10.000018
ORF1ab/nsp31615S1615StcCtcT6767B.1.1.1760.029438
ORF1ab/nsp31615S1615StcCtcT6666AY.230.004603
ORF1ab/nsp31615S1615StcCtcT6666B.1.3510.001962
ORF1ab/nsp31615S1615StcCtcT6666B.1.4290.001553
ORF1ab/nsp31615S1615StcCtcT6565B.1.6210.005754
ORF1ab/nsp31615S1615StcCtcT6363AY.4.20.001366
ORF1ab/nsp31615S1615StcCtcT6161B.1.6370.004457
ORF1ab/nsp31615S1615StcCtcT5858B.1.1.3381
ORF1ab/nsp31615S1615StcCtcT4545B.1.1.5190.001787
ORF1ab/nsp31615S1615delTCC---4444B.1.1.70.000039
ORF1ab/nsp31615S1615StcCtcT4243AY.1200.001562
ORF1ab/nsp31615S1615StcCtcA143AY.1200.000037
ORF1ab/nsp31615S1615StcCtcT3638AY.30.000358
ORF1ab/nsp31615S1615StcCtcA238AY.30.00002
ORF1ab/nsp31615S1615PTccCcc3737AY.200.001438
ORF1ab/nsp31615S1615StcCtcT3737B.1.5270.137037
ORF1ab/nsp31615S1615StcCtcT3333AY.1180.002067
ORF1ab/nsp31615S1615StcCtcT3030B.1.1.4860.047319
ORF1ab/nsp31615S1615StcCtcT2727AY.1020.000716
ORF1ab/nsp31615S1615StcCtcT2727AY.1060.009042
ORF1ab/nsp31615S1615StcCtcT2526AY.1190.000883
ORF1ab/nsp31615S1615StcCtcA126AY.1190.000035
ORF1ab/nsp31615S1615StcCtcT2525AY.120.10.008026
ORF1ab/nsp31615S1615StcCtcT2225AY.470.000684
ORF1ab/nsp31615S1615StcCtcA325AY.470.000093
ORF1ab/nsp31615S1615StcCtcT1324AY.260.000368
ORF1ab/nsp31615S1615StcCtcA1124AY.260.000311
ORF1ab/nsp31615S1615StcCtcT2323AY.290.000363
ORF1ab/nsp31615S1615StcCtcT2323B.1.4270.001161
ORF1ab/nsp31615S1615CtCCtGT2222All0.000004
ORF1ab/nsp31615S1615StcCtcT2222B.1.2210.001563
ORF1ab/nsp31615S1615StcCtcT2121AY.140.001848
ORF1ab/nsp31615S1615StcCtcT2021B.1.5260.00047
ORF1ab/nsp31615S1615StcCtcA121B.1.5260.000024
ORF1ab/nsp31615S1615StcCtcT2121C.370.002437
ORF1ab/nsp31615S1615StcCtcT2020AY.98.10.000969
ORF1ab/nsp31615S1615PTccCcc2020B.1.1.70.000018
ORF1ab/nsp31615S1615FtCctTc1819All0.000003
ORF1ab/nsp31615S1615FtCCtTT119All0
ORF1ab/nsp31615S1615StcCtcT1919AY.10.007519
ORF1ab/nsp31615S1615CtCCtGT1818AY.200.0007
ORF1ab/nsp31615S1615StcCtcT1818AY.360.002668
ORF1ab/nsp31615S1615StcCtcT1818B.1.5170.007686
ORF1ab/nsp31615S1615StcCtcT1617AY.330.001068
ORF1ab/nsp31615S1615StcCtcA117AY.330.000067
ORF1ab/nsp31615S1615StcCtcT1717B.1.1.5250.092896
ORF1ab/nsp31615S1615YtCctAc1516All0.000003
ORF1ab/nsp31615S1615YtCCtAT116All0
ORF1ab/nsp31615S1615StcCtcT1516AY.390.000371
ORF1ab/nsp31615S1615StcCtcA116AY.390.000025
ORF1ab/nsp31615S1615StcCtcT1616AZ.50.05614
ORF1ab/nsp31615S1615StcCtcG815B.1.5250.000905
ORF1ab/nsp31615S1615StcCtcT715B.1.5250.000792
ORF1ab/nsp31615S1615StcCtcT1314AY.130.002093
ORF1ab/nsp31615S1615StcCtcA114AY.130.000161
ORF1ab/nsp31615S1615StcCtcT1414AY.16.10.006579
ORF1ab/nsp31615S1615StcCtcT1414AY.200.000544
ORF1ab/nsp31615S1615StcCtcT1414AY.4.50.001505
ORF1ab/nsp31615S1615StcCtcT1414B.1.5960.00122
ORF1ab/nsp31615S1615StcCtcT1414L.20.159091
ORF1ab/nsp31615S1615StcCtcT1313B.1.36.290.006725
ORF1ab/nsp31615S1615StcCtcT1212AY.930.003277
ORF1ab/nsp31615S1615PTccCcc1212B.1.617.20.000045
ORF1ab/nsp31615S1615ATccGcc1111All0.000002
ORF1ab/nsp31615S1615PTccCcc1111AY.440.000067
ORF1ab/nsp31615S1615StcCtcT1010AY.1130.001424
ORF1ab/nsp31615S1615StcCtcT1010AY.410.002939
ORF1ab/nsp31615S1615StcCtcT910AY.50.000186
ORF1ab/nsp31615S1615StcCtcG110AY.50.000021
ORF1ab/nsp31615S1615StcCtcT1010B.1.177.330.016447
ORF1ab/nsp31615S1615StcCtcT99AY.7.10.001014
ORF1ab/nsp31615S1615PTccCcc99B.10.000082
ORF1ab/nsp31615S1615StcCtcT89B.1.1.280.00249
ORF1ab/nsp31615S1615StcCtcA19B.1.1.280.000311
ORF1ab/nsp31615S1615StcCtcT99B.1.177.790.021077
ORF1ab/nsp31615S1615StcCtcT99B.1.360.001313
ORF1ab/nsp31615S1615StcCtcT99Q.80.001484
ORF1ab/nsp31615S1615ATccGcc88AY.40.000012
ORF1ab/nsp31615S1615StcCtcT78B0.000895
ORF1ab/nsp31615S1615StcCtcA18B0.000128
ORF1ab/nsp31615S1615delTCC---88B.1.1770.000105
ORF1ab/nsp31615S1615StcCtcT78B.1.2580.000466
ORF1ab/nsp31615S1615StcCtcA18B.1.2580.000067
ORF1ab/nsp31615S1615StcCtcT88B.1.4970.002518
ORF1ab/nsp31615S1615StcCtcT88P.1.10.002541
ORF1ab/nsp31615S1615XtCCtAA77All0.000001
ORF1ab/nsp31615S1615PTccCcc77AY.430.000031
ORF1ab/nsp31615S1615StcCtcT67AY.9.10.000502
ORF1ab/nsp31615S1615StcCtcA17AY.9.10.000084
ORF1ab/nsp31615S1615StcCtcT77B.1.1.10.002287
ORF1ab/nsp31615S1615StcCtcT77B.1.1.2140.000388
ORF1ab/nsp31615S1615StcCtcT77B.1.1.4850.116667
ORF1ab/nsp31615S1615StcCtcT77B.1.177.350.004838
ORF1ab/nsp31615S1615StcCtcT77B.1.214.20.004197
ORF1ab/nsp31615S1615StcCtcT77B.1.2430.000487
ORF1ab/nsp31615S1615StcCtcT77B.1.36.70.028
ORF1ab/nsp31615S1615delTCC---66AY.40.000009
ORF1ab/nsp31615S1615PTccCcc66AY.40.000009
ORF1ab/nsp31615S1615StcCtcT66AY.450.00073
ORF1ab/nsp31615S1615StcCtcT66AY.850.002563
ORF1ab/nsp31615S1615StcCtcT66AY.980.000474
ORF1ab/nsp31615S1615StcCtcT66B.1.1.3170.00247
ORF1ab/nsp31615S1615StcCtcT66B.1.2340.000792
ORF1ab/nsp31615S1615StcCtcT66P.1.140.000287
ORF1ab/nsp31615S1615StcCtcT55A.10.001409
ORF1ab/nsp31615S1615StcCtcT55AY.1100.000563
ORF1ab/nsp31615S1615StcCtcT55AY.1170.000423
ORF1ab/nsp31615S1615StcCtcT55AY.39.10.000198
ORF1ab/nsp31615S1615StcCtcT45AY.460.000416
ORF1ab/nsp31615S1615StcCtcA15AY.460.000104
ORF1ab/nsp31615S1615YtCctAc55B.10.000046
ORF1ab/nsp31615S1615StcCtcT45B.1.1.2160.003562
ORF1ab/nsp31615S1615StcCtcA15B.1.1.2160.00089
ORF1ab/nsp31615S1615StcCtcT55B.1.1.2840.000537
ORF1ab/nsp31615S1615StcCtcT55B.1.2320.002687
ORF1ab/nsp31615S1615StcCtcT55B.1.4460.1
ORF1ab/nsp31615S1615StcCtcT55P.1.150.001162
ORF1ab/nsp31615S1615StcCtcT55P.1.70.001596
ORF1ab/nsp31615S1615StcCtcT44AY.4.2.10.000596
ORF1ab/nsp31615S1615StcCtcT44AY.9.20.000147
ORF1ab/nsp31615S1615StcCtcT44B.1.1.3980.012903
ORF1ab/nsp31615S1615StcCtcT44B.1.177.50.004969
ORF1ab/nsp31615S1615StcCtcT44B.1.177.870.002911
ORF1ab/nsp31615S1615StcCtcT44B.1.3110.001098
ORF1ab/nsp31615S1615StcCtcT44B.1.3330.042105
ORF1ab/nsp31615S1615StcCtcT44B.1.5580.018265
ORF1ab/nsp31615S1615StcCtcT44D.20.0003
ORF1ab/nsp31615S1615PTccCcc33AY.1030.000019
ORF1ab/nsp31615S1615StcCtcT33AY.1050.001929
ORF1ab/nsp31615S1615StcCtcT33AY.1110.000549
ORF1ab/nsp31615S1615YtCctAc33AY.430.000013
ORF1ab/nsp31615S1615StcCtcT33AY.46.20.001906
ORF1ab/nsp31615S1615StcCtcT33AY.46.60.000217
ORF1ab/nsp31615S1615StcCtcT33AY.750.000168
ORF1ab/nsp31615S1615StcCtcT33AY.790.003632
ORF1ab/nsp31615S1615XtCCtAA33B.10.000027
ORF1ab/nsp31615S1615delTCC---33B.10.000027
ORF1ab/nsp31615S1615delTCC---33B.1.10.000054
ORF1ab/nsp31615S1615StcCtcT33B.1.1.1980.004405
ORF1ab/nsp31615S1615StcCtcT33B.1.1.330.001263
ORF1ab/nsp31615S1615FtCctTc33B.1.1.70.000003
ORF1ab/nsp31615S1615StcCtcT33B.1.1260.003827
ORF1ab/nsp31615S1615StcCtcT33B.1.177.100.002634
ORF1ab/nsp31615S1615PTccCcc33B.1.20.000026
ORF1ab/nsp31615S1615StcCtcT33B.1.2890.007979
ORF1ab/nsp31615S1615StcCtcT33B.1.4690.01083
ORF1ab/nsp31615S1615StcCtcT33B.1.617.10.000387
ORF1ab/nsp31615S1615delTCC---33B.1.617.20.000011
ORF1ab/nsp31615S1615StcCtcT33B.1.6280.001057
ORF1ab/nsp31615S1615StcCtcT33B.400.001093
ORF1ab/nsp31615S1615StcCtcA33P.50.041096
ORF1ab/nsp31615S1615QTCCCAA220.111111
ORF1ab/nsp31615S1615StcCtcT220.111111
ORF1ab/nsp31615S1615StcCtcT22A.50.003846
ORF1ab/nsp31615S1615QTCCCAA22All0
ORF1ab/nsp31615S1615TTccAcc22All0
ORF1ab/nsp31615S1615VTCcGTc22All0
ORF1ab/nsp31615S1615LTCcCTc12All0
ORF1ab/nsp31615S1615LTCCCTG12All0
ORF1ab/nsp31615S1615del2tCCt--12All0
ORF1ab/nsp31615S1615del2TCc--c12All0
ORF1ab/nsp31615S1615StcCtcT22AY.120.20.002571
ORF1ab/nsp31615S1615delTCC---22AY.250.000012
ORF1ab/nsp31615S1615StcCtcT22AY.270.000129
ORF1ab/nsp31615S1615StcCtcT22AY.340.000194
ORF1ab/nsp31615S1615StcCtcT22AY.380.000999
ORF1ab/nsp31615S1615ATccGcc22AY.430.000009
ORF1ab/nsp31615S1615StcCtcT22AY.46.40.000329
ORF1ab/nsp31615S1615StcCtcT22AY.5.30.000675
ORF1ab/nsp31615S1615StcCtcT22AY.540.000191
ORF1ab/nsp31615S1615StcCtcT22AY.590.001059
ORF1ab/nsp31615S1615StcCtcT22AY.640.00119
ORF1ab/nsp31615S1615StcCtcT22AY.720.002721
ORF1ab/nsp31615S1615StcCtcT22AY.75.10.000361
ORF1ab/nsp31615S1615StcCtcT22AY.950.001522
ORF1ab/nsp31615S1615StcCtcT22AY.99.20.000184
ORF1ab/nsp31615S1615StcCtcT22B.1.1.2890.004167
ORF1ab/nsp31615S1615StcCtcT22B.1.1.3720.001377
ORF1ab/nsp31615S1615StcCtcT22B.1.1.500.001358
ORF1ab/nsp31615S1615StcCtcT22B.1.1.5230.003125
ORF1ab/nsp31615S1615StcCtcT22B.1.1280.001271
ORF1ab/nsp31615S1615PTccCcc12B.1.1770.000013
ORF1ab/nsp31615S1615PTcCCcT12B.1.1770.000013
ORF1ab/nsp31615S1615StcCtcT22B.1.177.120.000303
ORF1ab/nsp31615S1615StcCtcT22B.1.177.160.001329
ORF1ab/nsp31615S1615delTCC---22B.1.177.160.001329
ORF1ab/nsp31615S1615StcCtcT22B.1.177.420.001789
ORF1ab/nsp31615S1615StcCtcT22B.1.177.500.00939
ORF1ab/nsp31615S1615StcCtcT22B.1.177.540.001213
ORF1ab/nsp31615S1615delTCC---22B.1.177.540.001213
ORF1ab/nsp31615S1615CtCCtGT22B.1.177.570.000562
ORF1ab/nsp31615S1615delTCC---22B.1.177.570.000562
ORF1ab/nsp31615S1615StcCtcT22B.1.177.860.000367
ORF1ab/nsp31615S1615StcCtcT22B.1.1990.008264
ORF1ab/nsp31615S1615StcCtcT22B.1.351.20.000605
ORF1ab/nsp31615S1615StcCtcT22B.1.36.310.003503
ORF1ab/nsp31615S1615StcCtcT22B.1.3610.002577
ORF1ab/nsp31615S1615StcCtcT22B.1.3750.001639
ORF1ab/nsp31615S1615StcCtcA12B.1.3960.000706
ORF1ab/nsp31615S1615StcCtcT12B.1.3960.000706
ORF1ab/nsp31615S1615FtCctTc22B.1.4290.000047
ORF1ab/nsp31615S1615StcCtcT22B.1.4520.027397
ORF1ab/nsp31615S1615StcCtcT22B.1.5030.004975
ORF1ab/nsp31615S1615StcCtcT22B.1.5870.003795
ORF1ab/nsp31615S1615StcCtcT22B.1.5880.00182
ORF1ab/nsp31615S1615StcCtcT22B.1.5950.000522
ORF1ab/nsp31615S1615StcCtcT22B.1.6100.007092
ORF1ab/nsp31615S1615StcCtcT22B.1.6230.001073
ORF1ab/nsp31615S1615PTccCcc22D.20.00015
ORF1ab/nsp31615S1615StcCtcT22P.1.100.000539
ORF1ab/nsp31615S1615StcCtcT22P.1.120.000968
ORF1ab/nsp31615S1615StcCtcT22P.1.90.009615
ORF1ab/nsp31615S1615StcCtcG12P.20.000187
ORF1ab/nsp31615S1615StcCtcT12P.20.000187
ORF1ab/nsp31615S1615StcCtcT22R.10.00018
ORF1ab/nsp31615S1615YtCctAc11A0.000387
ORF1ab/nsp31615S1615XtCCtAA11A0.000387
ORF1ab/nsp31615S1615PTccCcc11A0.000387
ORF1ab/nsp31615S1615FtCctTc11A0.000387
ORF1ab/nsp31615S1615StcCtcA11A0.000387
ORF1ab/nsp31615S1615StcCtcT11AD.20.000219
ORF1ab/nsp31615S1615WtCCtGG11All0
ORF1ab/nsp31615S1615DTCcGAc11All0
ORF1ab/nsp31615S1615FtCctTc11AY.1000.000046
ORF1ab/nsp31615S1615PTccCcc11AY.1020.000027
ORF1ab/nsp31615S1615PTccCcc11AY.1130.000142
ORF1ab/nsp31615S1615StcCtcT11AY.116.10.000311
ORF1ab/nsp31615S1615PTccCcc11AY.1180.000063
ORF1ab/nsp31615S1615VTCcGTc11AY.1200.000037
ORF1ab/nsp31615S1615PTccCcc11AY.1200.000037
ORF1ab/nsp31615S1615StcCtcA11AY.120.2.10.000498
ORF1ab/nsp31615S1615FtCctTc11AY.1210.000135
ORF1ab/nsp31615S1615StcCtcT11AY.1210.000135
ORF1ab/nsp31615S1615StcCtcT11AY.190.00114
ORF1ab/nsp31615S1615StcCtcT11AY.220.002092
ORF1ab/nsp31615S1615PTccCcc11AY.230.00007
ORF1ab/nsp31615S1615delTCC---11AY.240.000431
ORF1ab/nsp31615S1615del2tCCt--11AY.250.000006
ORF1ab/nsp31615S1615PTccCcc11AY.250.000006
ORF1ab/nsp31615S1615FtCctTc11AY.29.10.000221
ORF1ab/nsp31615S1615StcCtcT11AY.29.10.000221
ORF1ab/nsp31615S1615FtCctTc11AY.30.00001
ORF1ab/nsp31615S1615StcCtcT11AY.34.10.00051
ORF1ab/nsp31615S1615StcCtcT11AY.39.20.001541
ORF1ab/nsp31615S1615FtCctTc11AY.40.000002
ORF1ab/nsp31615S1615FtCctTc11AY.4.20.000022
ORF1ab/nsp31615S1615PTccCcc11AY.4.2.10.000149
ORF1ab/nsp31615S1615XtCCtAA11AY.430.000004
ORF1ab/nsp31615S1615delTCC---11AY.430.000004
ORF1ab/nsp31615S1615VTCcGTc11AY.440.000006
ORF1ab/nsp31615S1615FtCctTc11AY.440.000006
ORF1ab/nsp31615S1615delTCC---11AY.46.20.000635
ORF1ab/nsp31615S1615StcCtcT11AY.480.000465
ORF1ab/nsp31615S1615delTCC---11AY.50.000021
ORF1ab/nsp31615S1615StcCtcT11AY.510.000909
ORF1ab/nsp31615S1615YtCctAc11AY.520.000814
ORF1ab/nsp31615S1615StcCtcT11AY.520.000814
ORF1ab/nsp31615S1615StcCtcT11AY.560.001605
ORF1ab/nsp31615S1615StcCtcA11AY.570.000656
ORF1ab/nsp31615S1615delTCC---11AY.60.000041
ORF1ab/nsp31615S1615StcCtcT11AY.600.000938
ORF1ab/nsp31615S1615StcCtcT11AY.610.000105
ORF1ab/nsp31615S1615StcCtcT11AY.620.000436
ORF1ab/nsp31615S1615StcCtcT11AY.650.000533
ORF1ab/nsp31615S1615delTCC---11AY.660.00107
ORF1ab/nsp31615S1615StcCtcT11AY.670.000464
ORF1ab/nsp31615S1615StcCtcT11AY.680.000274
ORF1ab/nsp31615S1615StcCtcT11AY.70.000196
ORF1ab/nsp31615S1615StcCtcT11AY.700.000209
ORF1ab/nsp31615S1615PTccCcc11AY.700.000209
ORF1ab/nsp31615S1615StcCtcA11AY.710.000475
ORF1ab/nsp31615S1615StcCtcT11AY.740.000116
ORF1ab/nsp31615S1615StcCtcT11AY.840.000437
ORF1ab/nsp31615S1615StcCtcT11AY.870.000833
ORF1ab/nsp31615S1615YtCCtAT11AY.90.000068
ORF1ab/nsp31615S1615StcCtcT11AY.910.00073
ORF1ab/nsp31615S1615StcCtcT11AY.970.001701
ORF1ab/nsp31615S1615FtCctTc11AY.980.000079
ORF1ab/nsp31615S1615StcCtcT11AY.99.10.001553
ORF1ab/nsp31615S1615StcCtcT11AZ.30.00152
ORF1ab/nsp31615S1615XtCCtAA11B0.000128
ORF1ab/nsp31615S1615YtCctAc11B0.000128
ORF1ab/nsp31615S1615FtCctTc11B.10.000009
ORF1ab/nsp31615S1615LTCCCTG11B.10.000009
ORF1ab/nsp31615S1615TTccAcc11B.1.10.000018
ORF1ab/nsp31615S1615StcCtcT11B.1.1.1710.003676
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2070.001182
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2200.001859
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2220.000204
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2320.001815
ORF1ab/nsp31615S1615delTCC---11B.1.1.2320.001815
ORF1ab/nsp31615S1615delTCC---11B.1.1.2360.006897
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2630.001558
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2880.001916
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2970.002237
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3060.000438
ORF1ab/nsp31615S1615FtCCtTT11B.1.1.3060.000438
ORF1ab/nsp31615S1615delTCC---11B.1.1.3060.000438
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3110.000358
ORF1ab/nsp31615S1615delTCC---11B.1.1.3110.000358
ORF1ab/nsp31615S1615delTCC---11B.1.1.3150.008475
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3180.000302
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3480.000796
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3490.010309
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3660.015873
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3690.000446
ORF1ab/nsp31615S1615delTCC---11B.1.1.370.000193
ORF1ab/nsp31615S1615PTccCcc11B.1.1.390.00051
ORF1ab/nsp31615S1615StcCtcT11B.1.1.4130.006897
ORF1ab/nsp31615S1615StcCtcT11B.1.1.4340.000349
ORF1ab/nsp31615S1615delTCC---11B.1.1.460.004367
ORF1ab/nsp31615S1615PTccCcc11B.1.1.4850.016667
ORF1ab/nsp31615S1615PTccCcc11B.1.1.5190.00004
ORF1ab/nsp31615S1615StcCtcT11B.1.1.520.012195
ORF1ab/nsp31615S1615StcCtcA11B.1.1.5240.020833
ORF1ab/nsp31615S1615StcCtcT11B.1.1.630.000386
ORF1ab/nsp31615S1615TTccAcc11B.1.1.70.000001
ORF1ab/nsp31615S1615ATccGcc11B.1.1.70.000001
ORF1ab/nsp31615S1615WtCCtGG11B.1.1.70.000001
ORF1ab/nsp31615S1615LTCcCTc11B.1.1.70.000001
ORF1ab/nsp31615S1615StcCtcT11B.1.1.700.000341
ORF1ab/nsp31615S1615StcCtcT11B.1.1.710.006061
ORF1ab/nsp31615S1615StcCtcT11B.1.1.830.00271
ORF1ab/nsp31615S1615StcCtcA11B.1.130.002375
ORF1ab/nsp31615S1615StcCtcT11B.1.1570.002985
ORF1ab/nsp31615S1615PTccCcc11B.1.1600.000031
ORF1ab/nsp31615S1615StcCtcT11B.1.160.140.002119
ORF1ab/nsp31615S1615StcCtcT11B.1.160.260.002421
ORF1ab/nsp31615S1615PTccCcc11B.1.160.320.004292
ORF1ab/nsp31615S1615delTCC---11B.1.1610.017241
ORF1ab/nsp31615S1615delTCC---11B.1.177.170.000821
ORF1ab/nsp31615S1615StcCtcT11B.1.177.170.000821
ORF1ab/nsp31615S1615delTCC---11B.1.177.190.001431
ORF1ab/nsp31615S1615PTccCcc11B.1.177.210.000076
ORF1ab/nsp31615S1615delTCC---11B.1.177.210.000076
ORF1ab/nsp31615S1615YtCctAc11B.1.177.230.003236
ORF1ab/nsp31615S1615FtCctTc11B.1.177.440.000519
ORF1ab/nsp31615S1615PTccCcc11B.1.177.440.000519
ORF1ab/nsp31615S1615delTCC---11B.1.177.510.004566
ORF1ab/nsp31615S1615StcCtcT11B.1.177.530.002392
ORF1ab/nsp31615S1615StcCtcT11B.1.177.60.000977
ORF1ab/nsp31615S1615StcCtcT11B.1.177.600.000218
ORF1ab/nsp31615S1615delTCC---11B.1.177.630.002703
ORF1ab/nsp31615S1615StcCtcT11B.1.1890.004292
ORF1ab/nsp31615S1615StcCtcT11B.1.230.006061
ORF1ab/nsp31615S1615StcCtcT11B.1.2350.002519
ORF1ab/nsp31615S1615StcCtcT11B.1.2380.014925
ORF1ab/nsp31615S1615StcCtcT11B.1.2410.000812
ORF1ab/nsp31615S1615delTCC---11B.1.2580.000067
ORF1ab/nsp31615S1615StcCtcT11B.1.258.160.001637
ORF1ab/nsp31615S1615StcCtcT11B.1.2700.005618
ORF1ab/nsp31615S1615YtCctAc11B.1.3010.005917
ORF1ab/nsp31615S1615XtCCtAA11B.1.3010.005917
ORF1ab/nsp31615S1615StcCtcA11B.1.3010.005917
ORF1ab/nsp31615S1615StcCtcT11B.1.3240.001605
ORF1ab/nsp31615S1615PTccCcc11B.1.3360.002439
ORF1ab/nsp31615S1615StcCtcT11B.1.3360.002439
ORF1ab/nsp31615S1615delTCC---11B.1.360.000146
ORF1ab/nsp31615S1615StcCtcT11B.1.36.160.001425
ORF1ab/nsp31615S1615StcCtcT11B.1.36.170.000494
ORF1ab/nsp31615S1615FtCctTc11B.1.36.70.004
ORF1ab/nsp31615S1615StcCtcT11B.1.3690.000285
ORF1ab/nsp31615S1615StcCtcT11B.1.4000.000429
ORF1ab/nsp31615S1615StcCtcT11B.1.4170.028571
ORF1ab/nsp31615S1615StcCtcT11B.1.4200.010417
ORF1ab/nsp31615S1615StcCtcT11B.1.4260.001009
ORF1ab/nsp31615S1615StcCtcT11B.1.4390.005917
ORF1ab/nsp31615S1615StcCtcT11B.1.4410.009615
ORF1ab/nsp31615S1615StcCtcT11B.1.4530.003236
ORF1ab/nsp31615S1615PTccCcc11B.1.4700.001404
ORF1ab/nsp31615S1615StcCtcT11B.1.4990.00105
ORF1ab/nsp31615S1615StcCtcT11B.1.5090.000866
ORF1ab/nsp31615S1615StcCtcT11B.1.5240.001406
ORF1ab/nsp31615S1615StcCtcT11B.1.5330.009615
ORF1ab/nsp31615S1615StcCtcT11B.1.5380.008065
ORF1ab/nsp31615S1615StcCtcT11B.1.5400.009709
ORF1ab/nsp31615S1615StcCtcT11B.1.5440.006024
ORF1ab/nsp31615S1615PTccCcc11B.1.5610.000397
ORF1ab/nsp31615S1615delTCC---11B.1.5610.000397
ORF1ab/nsp31615S1615CtCCtGT11B.1.5750.000303
ORF1ab/nsp31615S1615StcCtcA11B.1.5760.000907
ORF1ab/nsp31615S1615StcCtcT11B.1.5770.000687
ORF1ab/nsp31615S1615PTccCcc11B.1.5950.000261
ORF1ab/nsp31615S1615StcCtcT11B.1.5970.00463
ORF1ab/nsp31615S1615FtCctTc11B.1.617.20.000004
ORF1ab/nsp31615S1615YtCctAc11B.1.617.20.000004
ORF1ab/nsp31615S1615DTCcGAc11B.1.617.30.002985
ORF1ab/nsp31615S1615StcCtcT11B.1.6180.004032
ORF1ab/nsp31615S1615PTccCcc11B.1.6210.000089
ORF1ab/nsp31615S1615delTCC---11B.1.6210.000089
ORF1ab/nsp31615S1615YtCctAc11B.1.6230.000536
ORF1ab/nsp31615S1615StcCtcG11B.1.6360.006711
ORF1ab/nsp31615S1615StcCtcT11B.4.70.010101
ORF1ab/nsp31615S1615StcCtcT11B.60.00091
ORF1ab/nsp31615S1615StcCtcT11C.140.004329
ORF1ab/nsp31615S1615StcCtcT11C.160.00106
ORF1ab/nsp31615S1615del2TCc--c11C.350.000774
ORF1ab/nsp31615S1615StcCtcT11C.36.30.000567
ORF1ab/nsp31615S1615StcCtcT11L.10.001905
ORF1ab/nsp31615S1615CtCCtGT11P.10.000016
ORF1ab/nsp31615S1615PTccCcc11P.10.000016
ORF1ab/nsp31615S1615PTccCcc11P.1.140.000048
ORF1ab/nsp31615S1615StcCtcT11P.1.170.000162
ORF1ab/nsp31615S1615delTCC---11Q.10.000126
ORF1ab/nsp31615S1615delTCC---11Q.20.000613
ORF1ab/nsp31615S1615StcCtcT11Q.40.000455
ORF1ab/nsp31615S1615StcCtcT11V.10.022727
ORF1ab/nsp31615S1615StcCtcT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.