CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1608

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31608I1608II2426IsynatTatC153515210.9908797541-7543
ORF1ab/nsp31608I1608II2426IsynatTatA1535140.009120527541-7543
ORF1ab/nsp31608I1608delI2426deldelATT---848417541-7543
ORF1ab/nsp31608I1608VI2426VnonsynAttGtt15130.8666677541-7543
ORF1ab/nsp31608I1608VI2426VnonsynAtTGtA1520.1333337541-7543
ORF1ab/nsp31608I1608FI2426FnonsynAttTtt11100.9090917541-7543
ORF1ab/nsp31608I1608LI2426LnonsynAttCtt1190.8181827541-7543
ORF1ab/nsp31608I1608LI2426LnonsynAtTTtA1120.1818187541-7543
ORF1ab/nsp31608I1608FI2426FnonsynAtTTtC1110.09090917541-7543
ORF1ab/nsp31608I1608del1I2426del1delAtt-tt740.5714297541-7543
ORF1ab/nsp31608I1608del1I2426del1delatTat-720.2857147541-7543
ORF1ab/nsp31608I1608del1I2426del1delaTta-t710.1428577541-7543
ORF1ab/nsp31608I1608MI2426MnonsynatTatG4417541-7543
ORF1ab/nsp31608I1608TI2426TnonsynaTtaCt430.757541-7543
ORF1ab/nsp31608I1608TI2426TnonsynaTTaCG410.257541-7543
ORF1ab/nsp31608I1608XI2426XnonsynATTTAA2217541-7543
ORF1ab/nsp31608I1608EI2426EnonsynATTGAA2217541-7543
ORF1ab/nsp31608I1608CI2426CnonsynATtTGt1117541-7543
ORF1ab/nsp31608I1608del2I2426del2delaTTa--1117541-7543
ORF1ab/nsp31608I1608NI2426NnonsynaTtaAt1117541-7543

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31608I1608IatTatC15211535All0.000291
ORF1ab/nsp31608I1608IatTatA141535All0.000003
ORF1ab/nsp31608I1608IatTatC12521252B.1.177.730.708947
ORF1ab/nsp31608I1608IatTatC107107B.1.1770.001409
ORF1ab/nsp31608I1608delATT---8484All0.000016
ORF1ab/nsp31608I1608IatTatC7070AY.40.000109
ORF1ab/nsp31608I1608delATT---3535B.1.1.70.000031
ORF1ab/nsp31608I1608IatTatC2929AY.460.003018
ORF1ab/nsp31608I1608IatTatC1616AY.960.033195
ORF1ab/nsp31608I1608VAttGtt1315All0.000002
ORF1ab/nsp31608I1608VAtTGtA215All0
ORF1ab/nsp31608I1608IatTatC1314AY.30.000129
ORF1ab/nsp31608I1608IatTatA114AY.30.00001
ORF1ab/nsp31608I1608FAttTtt1011All0.000002
ORF1ab/nsp31608I1608LAttCtt911All0.000002
ORF1ab/nsp31608I1608LAtTTtA211All0
ORF1ab/nsp31608I1608FAtTTtC111All0
ORF1ab/nsp31608I1608delATT---88B.1.1770.000105
ORF1ab/nsp31608I1608del1Att-tt47All0.000001
ORF1ab/nsp31608I1608del1atTat-27All0
ORF1ab/nsp31608I1608del1aTta-t17All0
ORF1ab/nsp31608I1608IatTatC47B.1.1.70.000004
ORF1ab/nsp31608I1608IatTatA37B.1.1.70.000003
ORF1ab/nsp31608I1608delATT---55AY.40.000008
ORF1ab/nsp31608I1608IatTatC55B.10.000046
ORF1ab/nsp31608I1608IatTatC55B.1.617.20.000019
ORF1ab/nsp31608I1608MatTatG44All0.000001
ORF1ab/nsp31608I1608TaTtaCt34All0.000001
ORF1ab/nsp31608I1608TaTTaCG14All0
ORF1ab/nsp31608I1608IatTatC44AY.1030.000025
ORF1ab/nsp31608I1608IatTatA44B.1.4990.004202
ORF1ab/nsp31608I1608VAttGtt33AY.1030.000019
ORF1ab/nsp31608I1608VAttGtt33AY.40.000005
ORF1ab/nsp31608I1608LAttCtt33B.1.1.70.000003
ORF1ab/nsp31608I1608del1Att-tt23B.1.20.000018
ORF1ab/nsp31608I1608del1atTat-13B.1.20.000009
ORF1ab/nsp31608I1608LAtTTtA220.111111
ORF1ab/nsp31608I1608VAtTGtA220.111111
ORF1ab/nsp31608I1608XATTTAA220.111111
ORF1ab/nsp31608I1608EATTGAA220.111111
ORF1ab/nsp31608I1608EATTGAA22All0
ORF1ab/nsp31608I1608XATTTAA22All0
ORF1ab/nsp31608I1608VAttGtt22AY.1200.000074
ORF1ab/nsp31608I1608delATT---22AY.250.000012
ORF1ab/nsp31608I1608FAttTtt22AY.260.000057
ORF1ab/nsp31608I1608IatTatA22AY.290.000032
ORF1ab/nsp31608I1608FAttTtt22AY.30.00002
ORF1ab/nsp31608I1608delATT---22AY.430.000009
ORF1ab/nsp31608I1608delATT---22B.10.000018
ORF1ab/nsp31608I1608delATT---22B.1.10.000036
ORF1ab/nsp31608I1608IatTatC22B.1.160.200.017857
ORF1ab/nsp31608I1608delATT---22B.1.177.160.001329
ORF1ab/nsp31608I1608delATT---22B.1.177.540.001213
ORF1ab/nsp31608I1608IatTatC22R.10.00018
ORF1ab/nsp31608I1608NaTtaAt110.055556
ORF1ab/nsp31608I1608delATT---11A0.000387
ORF1ab/nsp31608I1608CATtTGt11All0
ORF1ab/nsp31608I1608NaTtaAt11All0
ORF1ab/nsp31608I1608del2aTTa--11All0
ORF1ab/nsp31608I1608IatTatC11AY.1010.00049
ORF1ab/nsp31608I1608FAttTtt11AY.1140.000231
ORF1ab/nsp31608I1608IatTatC11AY.1170.000085
ORF1ab/nsp31608I1608IatTatC11AY.130.000161
ORF1ab/nsp31608I1608delATT---11AY.240.000431
ORF1ab/nsp31608I1608FAttTtt11AY.250.000006
ORF1ab/nsp31608I1608IatTatA11AY.250.000006
ORF1ab/nsp31608I1608CATtTGt11AY.30.00001
ORF1ab/nsp31608I1608IatTatC11AY.320.000532
ORF1ab/nsp31608I1608MatTatG11AY.330.000067
ORF1ab/nsp31608I1608MatTatG11AY.380.000499
ORF1ab/nsp31608I1608IatTatC11AY.390.000025
ORF1ab/nsp31608I1608del1Att-tt11AY.39.10.00004
ORF1ab/nsp31608I1608LAttCtt11AY.40.000002
ORF1ab/nsp31608I1608delATT---11AY.4.50.000107
ORF1ab/nsp31608I1608VAttGtt11AY.430.000004
ORF1ab/nsp31608I1608IatTatC11AY.430.000004
ORF1ab/nsp31608I1608del1Att-tt11AY.440.000006
ORF1ab/nsp31608I1608delATT---11AY.46.20.000635
ORF1ab/nsp31608I1608VAttGtt11AY.50.000021
ORF1ab/nsp31608I1608delATT---11AY.60.000041
ORF1ab/nsp31608I1608delATT---11AY.660.00107
ORF1ab/nsp31608I1608FAttTtt11AY.740.000116
ORF1ab/nsp31608I1608LAttCtt11AY.750.000056
ORF1ab/nsp31608I1608FAttTtt11AY.75.10.00018
ORF1ab/nsp31608I1608IatTatC11AY.820.001357
ORF1ab/nsp31608I1608TaTtaCt11B.10.000009
ORF1ab/nsp31608I1608VAttGtt11B.10.000009
ORF1ab/nsp31608I1608VAttGtt11B.1.10.000018
ORF1ab/nsp31608I1608IatTatC11B.1.10.000018
ORF1ab/nsp31608I1608delATT---11B.1.1.1590.004673
ORF1ab/nsp31608I1608delATT---11B.1.1.2320.001815
ORF1ab/nsp31608I1608delATT---11B.1.1.2360.006897
ORF1ab/nsp31608I1608delATT---11B.1.1.3060.000438
ORF1ab/nsp31608I1608delATT---11B.1.1.3110.000358
ORF1ab/nsp31608I1608delATT---11B.1.1.3150.008475
ORF1ab/nsp31608I1608MatTatG11B.1.1.3690.000446
ORF1ab/nsp31608I1608delATT---11B.1.1.460.004367
ORF1ab/nsp31608I1608IatTatA11B.1.1.580.005376
ORF1ab/nsp31608I1608del1atTat-11B.1.1.70.000001
ORF1ab/nsp31608I1608MatTatG11B.1.1.70.000001
ORF1ab/nsp31608I1608FAtTTtC11B.1.1.70.000001
ORF1ab/nsp31608I1608del2aTTa--11B.1.1.70.000001
ORF1ab/nsp31608I1608delATT---11B.1.1610.017241
ORF1ab/nsp31608I1608delATT---11B.1.177.190.001431
ORF1ab/nsp31608I1608delATT---11B.1.177.210.000076
ORF1ab/nsp31608I1608delATT---11B.1.177.510.004566
ORF1ab/nsp31608I1608delATT---11B.1.177.570.000281
ORF1ab/nsp31608I1608delATT---11B.1.177.810.000189
ORF1ab/nsp31608I1608TaTTaCG11B.1.20.000009
ORF1ab/nsp31608I1608IatTatA11B.1.20.000009
ORF1ab/nsp31608I1608delATT---11B.1.20.000009
ORF1ab/nsp31608I1608VAttGtt11B.1.20.000009
ORF1ab/nsp31608I1608LAttCtt11B.1.20.000009
ORF1ab/nsp31608I1608IatTatC11B.1.2210.000071
ORF1ab/nsp31608I1608LAttCtt11B.1.2430.00007
ORF1ab/nsp31608I1608delATT---11B.1.2580.000067
ORF1ab/nsp31608I1608FAttTtt11B.1.36.160.001425
ORF1ab/nsp31608I1608IatTatC11B.1.4080.00369
ORF1ab/nsp31608I1608LAttCtt11B.1.4270.00005
ORF1ab/nsp31608I1608LAttCtt11B.1.4290.000024
ORF1ab/nsp31608I1608del1aTta-t11B.1.5960.000087
ORF1ab/nsp31608I1608IatTatC11B.1.6050.005952
ORF1ab/nsp31608I1608FAttTtt11B.1.617.20.000004
ORF1ab/nsp31608I1608TaTtaCt11B.1.617.20.000004
ORF1ab/nsp31608I1608IatTatC11B.1.6190.000871
ORF1ab/nsp31608I1608delATT---11B.1.6210.000089
ORF1ab/nsp31608I1608TaTtaCt11C.350.000774
ORF1ab/nsp31608I1608IatTatA11D.20.000075
ORF1ab/nsp31608I1608delATT---11Q.10.000126
ORF1ab/nsp31608I1608delATT---11U.30.003861