CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1607

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31607T1607TT2425TsynacTacC13368133620.9995517538-7540
ORF1ab/nsp31607T1607TT2425TsynacTacG1336830.0002244177538-7540
ORF1ab/nsp31607T1607TT2425TsynacTacA1336830.0002244177538-7540
ORF1ab/nsp31607T1607delT2425deldelACT---868617538-7540
ORF1ab/nsp31607T1607IT2425InonsynaCtaTt20170.857538-7540
ORF1ab/nsp31607T1607IT2425InonsynaCTaTC2030.157538-7540
ORF1ab/nsp31607T1607NT2425NnonsynaCtaAt4417538-7540
ORF1ab/nsp31607T1607del1T2425del1delacTac-2217538-7540
ORF1ab/nsp31607T1607FT2425FnonsynACtTTt1117538-7540
ORF1ab/nsp31607T1607AT2425AnonsynActGct1117538-7540
ORF1ab/nsp31607T1607PT2425PnonsynActCct1117538-7540
ORF1ab/nsp31607T1607ST2425SnonsynActTct1117538-7540
ORF1ab/nsp31607T1607DT2425DnonsynACtGAt1117538-7540
ORF1ab/nsp31607T1607del2T2425del2delaCTa--1117538-7540

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31607T1607TacTacC1336213368All0.002556
ORF1ab/nsp31607T1607TacTacA313368All0.000001
ORF1ab/nsp31607T1607TacTacG313368All0.000001
ORF1ab/nsp31607T1607TacTacC1316813168D.20.988143
ORF1ab/nsp31607T1607delACT---8686All0.000016
ORF1ab/nsp31607T1607TacTacC5151B.10.000467
ORF1ab/nsp31607T1607TacTacC4141B.1.10.000744
ORF1ab/nsp31607T1607delACT---3636B.1.1.70.000032
ORF1ab/nsp31607T1607TacTacC2626B.1.1.250.014781
ORF1ab/nsp31607T1607IaCtaTt1720All0.000003
ORF1ab/nsp31607T1607IaCTaTC320All0.000001
ORF1ab/nsp31607T1607TacTacC1010B.1.1.70.000009
ORF1ab/nsp31607T1607TacTacC88AY.40.000012
ORF1ab/nsp31607T1607delACT---88B.1.1770.000105
ORF1ab/nsp31607T1607TacTacC77AY.440.000043
ORF1ab/nsp31607T1607TacTacC66AY.260.00017
ORF1ab/nsp31607T1607delACT---55AY.40.000008
ORF1ab/nsp31607T1607TacTacC55B.1.177.70.000824
ORF1ab/nsp31607T1607TacTacC55B.1.20.000044
ORF1ab/nsp31607T1607NaCtaAt44All0.000001
ORF1ab/nsp31607T1607TacTacC44B.1.1.1610.014134
ORF1ab/nsp31607T1607TacTacC33AY.1140.000693
ORF1ab/nsp31607T1607TacTacC33AY.430.000013
ORF1ab/nsp31607T1607delACT---33B.10.000027
ORF1ab/nsp31607T1607delACT---33B.1.10.000054
ORF1ab/nsp31607T1607IaCtaTt220.111111
ORF1ab/nsp31607T1607NaCtaAt220.111111
ORF1ab/nsp31607T1607TacTacA120.055556
ORF1ab/nsp31607T1607TacTacG120.055556
ORF1ab/nsp31607T1607del1acTac-22All0
ORF1ab/nsp31607T1607delACT---22AY.250.000012
ORF1ab/nsp31607T1607TacTacC22AY.250.000012
ORF1ab/nsp31607T1607TacTacC22AY.30.00002
ORF1ab/nsp31607T1607delACT---22AY.430.000009
ORF1ab/nsp31607T1607TacTacC22AY.920.000575
ORF1ab/nsp31607T1607IaCtaTt22B.1.1.70.000002
ORF1ab/nsp31607T1607delACT---22B.1.177.160.001329
ORF1ab/nsp31607T1607delACT---22B.1.177.540.001213
ORF1ab/nsp31607T1607delACT---11A0.000387
ORF1ab/nsp31607T1607AActGct11All0
ORF1ab/nsp31607T1607PActCct11All0
ORF1ab/nsp31607T1607del2aCTa--11All0
ORF1ab/nsp31607T1607FACtTTt11All0
ORF1ab/nsp31607T1607DACtGAt11All0
ORF1ab/nsp31607T1607SActTct11All0
ORF1ab/nsp31607T1607TacTacC11AS.10.009524
ORF1ab/nsp31607T1607NaCtaAt11AY.1000.000046
ORF1ab/nsp31607T1607TacTacC11AY.1000.000046
ORF1ab/nsp31607T1607TacTacC11AY.1030.000006
ORF1ab/nsp31607T1607TacTacC11AY.1190.000035
ORF1ab/nsp31607T1607TacTacC11AY.120.000316
ORF1ab/nsp31607T1607DACtGAt11AY.1200.000037
ORF1ab/nsp31607T1607delACT---11AY.240.000431
ORF1ab/nsp31607T1607IaCtaTt11AY.250.000006
ORF1ab/nsp31607T1607IaCtaTt11AY.30.00001
ORF1ab/nsp31607T1607TacTacC11AY.390.000025
ORF1ab/nsp31607T1607del1acTac-11AY.39.10.00004
ORF1ab/nsp31607T1607IaCtaTt11AY.40.000002
ORF1ab/nsp31607T1607SActTct11AY.40.000002
ORF1ab/nsp31607T1607delACT---11AY.4.50.000107
ORF1ab/nsp31607T1607IaCtaTt11AY.430.000004
ORF1ab/nsp31607T1607TacTacC11AY.460.000104
ORF1ab/nsp31607T1607delACT---11AY.46.20.000635
ORF1ab/nsp31607T1607IaCTaTC11AY.46.20.000635
ORF1ab/nsp31607T1607TacTacC11AY.470.000031
ORF1ab/nsp31607T1607TacTacC11AY.50.000021
ORF1ab/nsp31607T1607delACT---11AY.60.000041
ORF1ab/nsp31607T1607delACT---11AY.660.00107
ORF1ab/nsp31607T1607TacTacG11AY.670.000464
ORF1ab/nsp31607T1607TacTacC11AY.750.000056
ORF1ab/nsp31607T1607TacTacG11AY.90.000068
ORF1ab/nsp31607T1607IaCtaTt11AY.9.20.000037
ORF1ab/nsp31607T1607TacTacC11AZ.20.000821
ORF1ab/nsp31607T1607AActGct11B.10.000009
ORF1ab/nsp31607T1607NaCtaAt11B.10.000009
ORF1ab/nsp31607T1607IaCtaTt11B.10.000009
ORF1ab/nsp31607T1607delACT---11B.1.1.1590.004673
ORF1ab/nsp31607T1607TacTacC11B.1.1.2140.000055
ORF1ab/nsp31607T1607delACT---11B.1.1.2320.001815
ORF1ab/nsp31607T1607delACT---11B.1.1.2360.006897
ORF1ab/nsp31607T1607delACT---11B.1.1.3060.000438
ORF1ab/nsp31607T1607delACT---11B.1.1.3110.000358
ORF1ab/nsp31607T1607delACT---11B.1.1.3150.008475
ORF1ab/nsp31607T1607delACT---11B.1.1.460.004367
ORF1ab/nsp31607T1607PActCct11B.1.1.70.000001
ORF1ab/nsp31607T1607del2aCTa--11B.1.1.70.000001
ORF1ab/nsp31607T1607delACT---11B.1.1610.017241
ORF1ab/nsp31607T1607IaCtaTt11B.1.1770.000013
ORF1ab/nsp31607T1607TacTacC11B.1.1770.000013
ORF1ab/nsp31607T1607delACT---11B.1.177.190.001431
ORF1ab/nsp31607T1607delACT---11B.1.177.210.000076
ORF1ab/nsp31607T1607delACT---11B.1.177.510.004566
ORF1ab/nsp31607T1607delACT---11B.1.177.570.000281
ORF1ab/nsp31607T1607delACT---11B.1.177.810.000189
ORF1ab/nsp31607T1607TacTacA11B.1.177.810.000189
ORF1ab/nsp31607T1607del1acTac-11B.1.20.000009
ORF1ab/nsp31607T1607IaCTaTC11B.1.20.000009
ORF1ab/nsp31607T1607IaCtaTt11B.1.2060.000816
ORF1ab/nsp31607T1607TacTacC11B.1.2100.002132
ORF1ab/nsp31607T1607delACT---11B.1.2580.000067
ORF1ab/nsp31607T1607TacTacC11B.1.2580.000067
ORF1ab/nsp31607T1607IaCtaTt11B.1.3350.010309
ORF1ab/nsp31607T1607FACtTTt11B.1.36.160.001425
ORF1ab/nsp31607T1607IaCtaTt11B.1.4040.001302
ORF1ab/nsp31607T1607IaCtaTt11B.1.4160.001269
ORF1ab/nsp31607T1607IaCtaTt11B.1.4290.000024
ORF1ab/nsp31607T1607IaCtaTt11B.1.440.008333
ORF1ab/nsp31607T1607TacTacC11B.1.5260.000024
ORF1ab/nsp31607T1607TacTacA11B.1.5610.000397
ORF1ab/nsp31607T1607TacTacC11B.1.5960.000087
ORF1ab/nsp31607T1607IaCTaTC11B.1.617.20.000004
ORF1ab/nsp31607T1607delACT---11B.1.6210.000089
ORF1ab/nsp31607T1607TacTacC11B.1.6280.000352
ORF1ab/nsp31607T1607TacTacC11P.20.000187
ORF1ab/nsp31607T1607delACT---11Q.10.000126
ORF1ab/nsp31607T1607delACT---11U.30.003861