CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1603 & Codon = gtA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31603V1603VV2421VsyngtCgtA155014540.02928847526-7528

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31603V1603VgtCgtA45415501All0.000087
ORF1ab/nsp31603V1603VgtCgtA3653114B.1.1.70.000327
ORF1ab/nsp31603V1603VgtCgtA11262B.1.6230.000536
ORF1ab/nsp31603V1603VgtCgtA3618B.1.3240.004815
ORF1ab/nsp31603V1603VgtCgtA29555B.1.617.20.000109
ORF1ab/nsp31603V1603VgtCgtA4455AY.40.000006
ORF1ab/nsp31603V1603VgtCgtA6301AY.430.000027
ORF1ab/nsp31603V1603VgtCgtA1267AY.250.000006
ORF1ab/nsp31603V1603VgtCgtA1261B.1.20.000009
ORF1ab/nsp31603V1603VgtCgtA3245B.10.000027
ORF1ab/nsp31603V1603VgtCgtA2197AY.440.000012
ORF1ab/nsp31603V1603VgtCgtA251AY.1020.000053
ORF1ab/nsp31603V1603VgtCgtA148Q.10.000126
ORF1ab/nsp31603V1603VgtCgtA144B.1.5260.000024
ORF1ab/nsp31603V1603VgtCgtA131AY.9.20.000037
ORF1ab/nsp31603V1603VgtCgtA525AY.420.000201
ORF1ab/nsp31603V1603VgtCgtA322AY.1000.000138
ORF1ab/nsp31603V1603VgtCgtA221C.370.000232
ORF1ab/nsp31603V1603VgtCgtA118B.1.1.390.00051
ORF1ab/nsp31603V1603VgtCgtA117B.1.3510.00003
ORF1ab/nsp31603V1603VgtCgtA115AY.98.10.000048
ORF1ab/nsp31603V1603VgtCgtA114B.1.5960.000087
ORF1ab/nsp31603V1603VgtCgtA214B.1.6210.000177
ORF1ab/nsp31603V1603VgtCgtA112AY.1210.000135
ORF1ab/nsp31603V1603VgtCgtA110AY.460.000104
ORF1ab/nsp31603V1603VgtCgtA17A0.000387
ORF1ab/nsp31603V1603VgtCgtA16AY.330.000067
ORF1ab/nsp31603V1603VgtCgtA15B.1.1.2910.000742
ORF1ab/nsp31603V1603VgtCgtA24AY.340.000194
ORF1ab/nsp31603V1603VgtCgtA13B0.000128
ORF1ab/nsp31603V1603VgtCgtA13B.1.5640.000426
ORF1ab/nsp31603V1603VgtCgtA13P.1.70.000319
ORF1ab/nsp31603V1603VgtCgtA12B.1.1.3110.000358
ORF1ab/nsp31603V1603VgtCgtA22B.1.1.3480.001592
ORF1ab/nsp31603V1603VgtCgtA12B.1.5170.000427
ORF1ab/nsp31603V1603VgtCgtA11AY.520.000814
ORF1ab/nsp31603V1603VgtCgtA11B.1.3010.005917
ORF1ab/nsp31603V1603VgtCgtA11B.1.5870.001898
ORF1ab/nsp31603V1603VgtCgtA11B.6.60.000889

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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