CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1603

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31603V1603VV2421VsyngtCgtT15501150440.9705187526-7528
ORF1ab/nsp31603V1603VV2421VsyngtCgtA155014540.02928847526-7528
ORF1ab/nsp31603V1603VV2421VsyngtCgtG1550130.0001935367526-7528
ORF1ab/nsp31603V1603IV2421InonsynGtcAtc2672660.9962557526-7528
ORF1ab/nsp31603V1603IV2421InonsynGtCAtT26710.003745327526-7528
ORF1ab/nsp31603V1603delV2421deldelGTC---878717526-7528
ORF1ab/nsp31603V1603FV2421FnonsynGtcTtc343417526-7528
ORF1ab/nsp31603V1603AV2421AnonsyngTcgCc23210.9130437526-7528
ORF1ab/nsp31603V1603AV2421AnonsyngTCgCT2320.08695657526-7528
ORF1ab/nsp31603V1603LV2421LnonsynGtcCtc101017526-7528
ORF1ab/nsp31603V1603DV2421DnonsyngTcgAc3317526-7528
ORF1ab/nsp31603V1603del2V2421del2delGTc--c210.57526-7528
ORF1ab/nsp31603V1603del2V2421del2delgTCg--210.57526-7528
ORF1ab/nsp31603V1603GV2421GnonsyngTcgGc1117526-7528
ORF1ab/nsp31603V1603HV2421HnonsynGTcCAc1117526-7528
ORF1ab/nsp31603V1603del1V2421del1delGtc-tc1117526-7528

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31603V1603VgtCgtT1504415501All0.002877
ORF1ab/nsp31603V1603VgtCgtA45415501All0.000087
ORF1ab/nsp31603V1603VgtCgtG315501All0.000001
ORF1ab/nsp31603V1603VgtCgtT27493114B.1.1.70.002461
ORF1ab/nsp31603V1603VgtCgtA3653114B.1.1.70.000327
ORF1ab/nsp31603V1603VgtCgtT20002000B.1.36.170.988142
ORF1ab/nsp31603V1603VgtCgtT14181418B.1.4290.033364
ORF1ab/nsp31603V1603VgtCgtT12611262B.1.6230.676502
ORF1ab/nsp31603V1603VgtCgtA11262B.1.6230.000536
ORF1ab/nsp31603V1603VgtCgtT615618B.1.3240.987159
ORF1ab/nsp31603V1603VgtCgtA3618B.1.3240.004815
ORF1ab/nsp31603V1603VgtCgtT526555B.1.617.20.001981
ORF1ab/nsp31603V1603VgtCgtA29555B.1.617.20.000109
ORF1ab/nsp31603V1603VgtCgtT504504AY.290.00795
ORF1ab/nsp31603V1603VgtCgtT451455AY.40.000702
ORF1ab/nsp31603V1603VgtCgtA4455AY.40.000006
ORF1ab/nsp31603V1603VgtCgtT440440B.1.36.390.97561
ORF1ab/nsp31603V1603VgtCgtT295301AY.430.001307
ORF1ab/nsp31603V1603VgtCgtA6301AY.430.000027
ORF1ab/nsp31603V1603IGtcAtc266267All0.000051
ORF1ab/nsp31603V1603IGtCAtT1267All0
ORF1ab/nsp31603V1603VgtCgtT266267AY.250.0016
ORF1ab/nsp31603V1603VgtCgtA1267AY.250.000006
ORF1ab/nsp31603V1603VgtCgtT260261B.1.20.002289
ORF1ab/nsp31603V1603VgtCgtA1261B.1.20.000009
ORF1ab/nsp31603V1603VgtCgtT259259B.1.1770.00341
ORF1ab/nsp31603V1603VgtCgtT241245B.10.002207
ORF1ab/nsp31603V1603VgtCgtA3245B.10.000027
ORF1ab/nsp31603V1603VgtCgtG1245B.10.000009
ORF1ab/nsp31603V1603VgtCgtT201201D.51
ORF1ab/nsp31603V1603VgtCgtT195197AY.440.001187
ORF1ab/nsp31603V1603VgtCgtA2197AY.440.000012
ORF1ab/nsp31603V1603VgtCgtT179179AY.1030.001111
ORF1ab/nsp31603V1603VgtCgtT159159P.1.140.0076
ORF1ab/nsp31603V1603VgtCgtT153153AY.230.010672
ORF1ab/nsp31603V1603VgtCgtT149149AY.30.001482
ORF1ab/nsp31603V1603VgtCgtT132132P.10.00208
ORF1ab/nsp31603V1603VgtCgtT114114AY.360.016896
ORF1ab/nsp31603V1603VgtCgtT108108B.1.2430.007515
ORF1ab/nsp31603V1603delGTC---8787All0.000017
ORF1ab/nsp31603V1603VgtCgtT8081B.1.10.001451
ORF1ab/nsp31603V1603VgtCgtG181B.1.10.000018
ORF1ab/nsp31603V1603IGtcAtc7878AY.30.000776
ORF1ab/nsp31603V1603VgtCgtT7373B.1.1.4340.025444
ORF1ab/nsp31603V1603VgtCgtT7070AY.470.002177
ORF1ab/nsp31603V1603VgtCgtT6868B.1.177.210.0052
ORF1ab/nsp31603V1603VgtCgtT6666B.1.1.5190.002621
ORF1ab/nsp31603V1603VgtCgtT5757B.1.5250.00645
ORF1ab/nsp31603V1603VgtCgtT5757B.1.6370.004165
ORF1ab/nsp31603V1603VgtCgtT4951AY.1020.001299
ORF1ab/nsp31603V1603VgtCgtA251AY.1020.000053
ORF1ab/nsp31603V1603VgtCgtT4848AY.990.050367
ORF1ab/nsp31603V1603VgtCgtT4748Q.10.005937
ORF1ab/nsp31603V1603VgtCgtA148Q.10.000126
ORF1ab/nsp31603V1603VgtCgtT4344B.1.5260.001011
ORF1ab/nsp31603V1603VgtCgtA144B.1.5260.000024
ORF1ab/nsp31603V1603IGtcAtc4343B.1.617.20.000162
ORF1ab/nsp31603V1603VgtCgtT4242B.1.2580.002795
ORF1ab/nsp31603V1603VgtCgtT4141AY.390.001013
ORF1ab/nsp31603V1603VgtCgtT3838C.30.290076
ORF1ab/nsp31603V1603VgtCgtT3737B.1.1600.001154
ORF1ab/nsp31603V1603VgtCgtT3737B.1.4990.038866
ORF1ab/nsp31603V1603delGTC---3535B.1.1.70.000031
ORF1ab/nsp31603V1603FGtcTtc3434All0.000007
ORF1ab/nsp31603V1603VgtCgtT3232B.1.1.3540.140351
ORF1ab/nsp31603V1603VgtCgtT3131AY.140.002728
ORF1ab/nsp31603V1603VgtCgtT3031AY.9.20.001102
ORF1ab/nsp31603V1603VgtCgtA131AY.9.20.000037
ORF1ab/nsp31603V1603VgtCgtT3030AY.50.000619
ORF1ab/nsp31603V1603VgtCgtT3030P.1.170.004853
ORF1ab/nsp31603V1603VgtCgtT2929AY.260.000821
ORF1ab/nsp31603V1603VgtCgtT2727AY.930.007373
ORF1ab/nsp31603V1603VgtCgtT2727B.1.4270.001363
ORF1ab/nsp31603V1603IGtcAtc2626AY.250.000156
ORF1ab/nsp31603V1603VgtCgtT2025AY.420.000805
ORF1ab/nsp31603V1603VgtCgtA525AY.420.000201
ORF1ab/nsp31603V1603VgtCgtT2525AY.90.00169
ORF1ab/nsp31603V1603VgtCgtT2424AY.1190.000847
ORF1ab/nsp31603V1603VgtCgtT2424AY.750.001345
ORF1ab/nsp31603V1603AgTcgCc2123All0.000004
ORF1ab/nsp31603V1603AgTCgCT223All0
ORF1ab/nsp31603V1603IGtcAtc2323AY.40.000036
ORF1ab/nsp31603V1603VgtCgtT2323AY.610.00241
ORF1ab/nsp31603V1603VgtCgtT1922AY.1000.000874
ORF1ab/nsp31603V1603VgtCgtA322AY.1000.000138
ORF1ab/nsp31603V1603VgtCgtT2222AY.1140.005084
ORF1ab/nsp31603V1603VgtCgtT2222AY.200.000855
ORF1ab/nsp31603V1603VgtCgtT2222AY.46.60.001589
ORF1ab/nsp31603V1603VgtCgtT2222B.1.1.2970.049217
ORF1ab/nsp31603V1603VgtCgtT2121AY.1180.001316
ORF1ab/nsp31603V1603VgtCgtT2021AY.60.000823
ORF1ab/nsp31603V1603VgtCgtG121AY.60.000041
ORF1ab/nsp31603V1603VgtCgtT1921C.370.002205
ORF1ab/nsp31603V1603VgtCgtA221C.370.000232
ORF1ab/nsp31603V1603VgtCgtT2020B.1.2400.004311
ORF1ab/nsp31603V1603IGtcAtc1919AY.1020.000504
ORF1ab/nsp31603V1603VgtCgtT1919AY.4.20.000412
ORF1ab/nsp31603V1603VgtCgtT1718B.1.1.390.008665
ORF1ab/nsp31603V1603VgtCgtA118B.1.1.390.00051
ORF1ab/nsp31603V1603VgtCgtT1818B.1.1.4160.01629
ORF1ab/nsp31603V1603VgtCgtT1818B.1.177.120.002731
ORF1ab/nsp31603V1603VgtCgtT1818C.36.30.01021
ORF1ab/nsp31603V1603VgtCgtT1617B.1.3510.000476
ORF1ab/nsp31603V1603VgtCgtA117B.1.3510.00003
ORF1ab/nsp31603V1603VgtCgtT1616P.1.40.015625
ORF1ab/nsp31603V1603VgtCgtT1415AY.98.10.000678
ORF1ab/nsp31603V1603VgtCgtA115AY.98.10.000048
ORF1ab/nsp31603V1603VgtCgtT1414AY.1160.004015
ORF1ab/nsp31603V1603VgtCgtT1414AY.39.10.000555
ORF1ab/nsp31603V1603VgtCgtT1414AY.46.40.002303
ORF1ab/nsp31603V1603VgtCgtT1314B.1.5960.001133
ORF1ab/nsp31603V1603VgtCgtA114B.1.5960.000087
ORF1ab/nsp31603V1603VgtCgtT1214B.1.6210.001062
ORF1ab/nsp31603V1603VgtCgtA214B.1.6210.000177
ORF1ab/nsp31603V1603VgtCgtT1313D.20.000976
ORF1ab/nsp31603V1603VgtCgtT1313P.30.020734
ORF1ab/nsp31603V1603VgtCgtT1212AY.1170.001014
ORF1ab/nsp31603V1603VgtCgtT1112AY.1210.001488
ORF1ab/nsp31603V1603VgtCgtA112AY.1210.000135
ORF1ab/nsp31603V1603VgtCgtT1212AY.99.20.001106
ORF1ab/nsp31603V1603VgtCgtT1212B.1.1.1760.005272
ORF1ab/nsp31603V1603VgtCgtT1212B.1.438.10.001287
ORF1ab/nsp31603V1603VgtCgtT1111AY.540.001049
ORF1ab/nsp31603V1603VgtCgtT1111B.1.1.1471
ORF1ab/nsp31603V1603LGtcCtc1010All0.000002
ORF1ab/nsp31603V1603VgtCgtT910AY.460.000937
ORF1ab/nsp31603V1603VgtCgtA110AY.460.000104
ORF1ab/nsp31603V1603VgtCgtT1010B.1.1.2530.025063
ORF1ab/nsp31603V1603IGtcAtc1010B.1.1.70.000009
ORF1ab/nsp31603V1603VgtCgtT1010B.1.5750.003034
ORF1ab/nsp31603V1603VgtCgtT99AY.1200.000335
ORF1ab/nsp31603V1603VgtCgtT99AY.480.004186
ORF1ab/nsp31603V1603VgtCgtT99B.1.1.3060.003946
ORF1ab/nsp31603V1603delGTC---99B.1.1770.000119
ORF1ab/nsp31603V1603VgtCgtT99B.1.2210.000639
ORF1ab/nsp31603V1603VgtCgtT99C.300.015544
ORF1ab/nsp31603V1603VgtCgtT88AY.1010.003923
ORF1ab/nsp31603V1603VgtCgtT88AY.1130.001139
ORF1ab/nsp31603V1603FGtcTtc88AY.40.000012
ORF1ab/nsp31603V1603IGtcAtc88AY.440.000049
ORF1ab/nsp31603V1603VgtCgtT88AY.450.000973
ORF1ab/nsp31603V1603VgtCgtT88B.1.177.440.004152
ORF1ab/nsp31603V1603IGtcAtc88B.1.20.00007
ORF1ab/nsp31603V1603VgtCgtT88B.1.6200.007569
ORF1ab/nsp31603V1603VgtCgtT88P.1.150.001859
ORF1ab/nsp31603V1603VgtCgtT67A0.002322
ORF1ab/nsp31603V1603VgtCgtA17A0.000387
ORF1ab/nsp31603V1603VgtCgtT77AY.29.10.001544
ORF1ab/nsp31603V1603IGtcAtc77AY.430.000031
ORF1ab/nsp31603V1603VgtCgtT77AY.75.10.001262
ORF1ab/nsp31603V1603VgtCgtT77AY.9.10.000586
ORF1ab/nsp31603V1603VgtCgtT77B.1.177.460.006428
ORF1ab/nsp31603V1603VgtCgtT77B.1.617.10.000903
ORF1ab/nsp31603V1603VgtCgtT77Q.30.001015
ORF1ab/nsp31603V1603VgtCgtT66AY.1110.001099
ORF1ab/nsp31603V1603VgtCgtT66AY.16.10.00282
ORF1ab/nsp31603V1603VgtCgtT66AY.240.002586
ORF1ab/nsp31603V1603VgtCgtT56AY.330.000334
ORF1ab/nsp31603V1603VgtCgtA16AY.330.000067
ORF1ab/nsp31603V1603VgtCgtT66AY.34.10.00306
ORF1ab/nsp31603V1603IGtcAtc66AY.39.10.000238
ORF1ab/nsp31603V1603VgtCgtT66AY.850.002563
ORF1ab/nsp31603V1603VgtCgtT66B.1.1.2220.001224
ORF1ab/nsp31603V1603VgtCgtT66B.1.1.3760.035714
ORF1ab/nsp31603V1603LGtcCtc66B.1.1.70.000005
ORF1ab/nsp31603V1603VgtCgtT66B.1.177.240.007772
ORF1ab/nsp31603V1603VgtCgtT66B.1.214.20.003597
ORF1ab/nsp31603V1603VgtCgtT66B.1.3670.004754
ORF1ab/nsp31603V1603VgtCgtT66P.20.00112
ORF1ab/nsp31603V1603VgtCgtT66Q.80.000989
ORF1ab/nsp31603V1603IGtcAtc55AY.260.000142
ORF1ab/nsp31603V1603VgtCgtT55AY.350.001165
ORF1ab/nsp31603V1603delGTC---55AY.40.000008
ORF1ab/nsp31603V1603VgtCgtT55AY.5.40.001384
ORF1ab/nsp31603V1603VgtCgtT55B.1.1.280.001556
ORF1ab/nsp31603V1603VgtCgtT45B.1.1.2910.00297
ORF1ab/nsp31603V1603VgtCgtA15B.1.1.2910.000742
ORF1ab/nsp31603V1603VgtCgtT55B.1.177.170.004105
ORF1ab/nsp31603V1603IGtcAtc55B.1.4290.000118
ORF1ab/nsp31603V1603VgtCgtT55B.1.5090.004329
ORF1ab/nsp31603V1603VgtCgtT55B.1.5610.001985
ORF1ab/nsp31603V1603VgtCgtT44AY.100.00212
ORF1ab/nsp31603V1603VgtCgtT44AY.120.10.001284
ORF1ab/nsp31603V1603VgtCgtT44AY.130.000644
ORF1ab/nsp31603V1603VgtCgtT44AY.160.001519
ORF1ab/nsp31603V1603VgtCgtA24AY.340.000194
ORF1ab/nsp31603V1603VgtCgtT24AY.340.000194
ORF1ab/nsp31603V1603VgtCgtT44AY.46.30.003735
ORF1ab/nsp31603V1603VgtCgtT44AY.910.002922
ORF1ab/nsp31603V1603VgtCgtT44AY.980.000316
ORF1ab/nsp31603V1603VgtCgtT44B.1.1.1630.030534
ORF1ab/nsp31603V1603VgtCgtT44B.1.1.2140.000222
ORF1ab/nsp31603V1603VgtCgtT44B.1.1.2770.003035
ORF1ab/nsp31603V1603VgtCgtT44B.1.1.3120.007648
ORF1ab/nsp31603V1603VgtCgtT44B.1.1.3170.001647
ORF1ab/nsp31603V1603VgtCgtT44B.1.1.4090.011331
ORF1ab/nsp31603V1603VgtCgtT44B.1.177.200.00607
ORF1ab/nsp31603V1603VgtCgtT44B.1.177.620.004768
ORF1ab/nsp31603V1603VgtCgtT44B.1.177.810.000757
ORF1ab/nsp31603V1603VgtCgtT44B.1.2340.000528
ORF1ab/nsp31603V1603VgtCgtT44B.1.258.170.000416
ORF1ab/nsp31603V1603VgtCgtT44B.1.2790.002054
ORF1ab/nsp31603V1603VgtCgtT44B.1.3490.002859
ORF1ab/nsp31603V1603VgtCgtT44B.1.360.000584
ORF1ab/nsp31603V1603VgtCgtT44B.1.5770.002749
ORF1ab/nsp31603V1603VgtCgtT44B.1.621.10.002023
ORF1ab/nsp31603V1603VgtCgtT33A.250.054545
ORF1ab/nsp31603V1603DgTcgAc33All0.000001
ORF1ab/nsp31603V1603FGtcTtc33AY.1030.000019
ORF1ab/nsp31603V1603VgtCgtT33AY.120.000948
ORF1ab/nsp31603V1603delGTC---33AY.250.000018
ORF1ab/nsp31603V1603VgtCgtT33AY.3.10.000256
ORF1ab/nsp31603V1603VgtCgtT33AY.4.30.002525
ORF1ab/nsp31603V1603AgTcgCc33AY.430.000013
ORF1ab/nsp31603V1603VgtCgtT33AY.570.001969
ORF1ab/nsp31603V1603VgtCgtT33AY.690.00056
ORF1ab/nsp31603V1603VgtCgtT33AY.700.000626
ORF1ab/nsp31603V1603VgtCgtT33AY.710.001425
ORF1ab/nsp31603V1603VgtCgtT23B0.000256
ORF1ab/nsp31603V1603VgtCgtA13B0.000128
ORF1ab/nsp31603V1603delGTC---33B.10.000027
ORF1ab/nsp31603V1603delGTC---33B.1.10.000054
ORF1ab/nsp31603V1603VgtCgtT33B.1.1.10.00098
ORF1ab/nsp31603V1603VgtCgtT33B.1.1.4320.003797
ORF1ab/nsp31603V1603VgtCgtT33B.1.1.4860.004732
ORF1ab/nsp31603V1603VgtCgtT33B.1.1.630.001157
ORF1ab/nsp31603V1603VgtCgtT33B.1.1180.020134
ORF1ab/nsp31603V1603VgtCgtT33B.1.1260.003827
ORF1ab/nsp31603V1603FGtcTtc33B.1.160.160.002788
ORF1ab/nsp31603V1603IGtcAtc33B.1.1770.00004
ORF1ab/nsp31603V1603VgtCgtT33B.1.177.340.157895
ORF1ab/nsp31603V1603VgtCgtT33B.1.177.570.000843
ORF1ab/nsp31603V1603VgtCgtT33B.1.177.70.000495
ORF1ab/nsp31603V1603VgtCgtT33B.1.177.730.001699
ORF1ab/nsp31603V1603VgtCgtT33B.1.1820.021739
ORF1ab/nsp31603V1603VgtCgtT33B.1.2360.00616
ORF1ab/nsp31603V1603VgtCgtT33B.1.3110.000824
ORF1ab/nsp31603V1603VgtCgtT33B.1.3200.003736
ORF1ab/nsp31603V1603VgtCgtT33B.1.351.50.001799
ORF1ab/nsp31603V1603VgtCgtT33B.1.466.20.001174
ORF1ab/nsp31603V1603VgtCgtT33B.1.4970.000944
ORF1ab/nsp31603V1603LGtcCtc33B.1.5250.000339
ORF1ab/nsp31603V1603VgtCgtT33B.1.5510.003871
ORF1ab/nsp31603V1603VgtCgtT23B.1.5640.000852
ORF1ab/nsp31603V1603VgtCgtA13B.1.5640.000426
ORF1ab/nsp31603V1603VgtCgtT33B.1.6120.007958
ORF1ab/nsp31603V1603VgtCgtT33C.360.002732
ORF1ab/nsp31603V1603VgtCgtT33P.1.100.000808
ORF1ab/nsp31603V1603VgtCgtT33P.1.20.003468
ORF1ab/nsp31603V1603VgtCgtT23P.1.70.000639
ORF1ab/nsp31603V1603VgtCgtA13P.1.70.000319
ORF1ab/nsp31603V1603VgtCgtT33R.10.00027
ORF1ab/nsp31603V1603AgTCgCT220.111111
ORF1ab/nsp31603V1603VgtCgtT22A.2.50.000998
ORF1ab/nsp31603V1603VgtCgtT22A.2.5.20.003145
ORF1ab/nsp31603V1603del2GTc--c12All0
ORF1ab/nsp31603V1603del2gTCg--12All0
ORF1ab/nsp31603V1603VgtCgtT22AY.10.000791
ORF1ab/nsp31603V1603IGtcAtc22AY.1030.000012
ORF1ab/nsp31603V1603VgtCgtT22AY.1060.00067
ORF1ab/nsp31603V1603VgtCgtT22AY.1080.002205
ORF1ab/nsp31603V1603FGtcTtc22AY.1210.000271
ORF1ab/nsp31603V1603VgtCgtT22AY.190.002281
ORF1ab/nsp31603V1603FGtcTtc22AY.190.002281
ORF1ab/nsp31603V1603VgtCgtT22AY.210.003795
ORF1ab/nsp31603V1603IGtcAtc22AY.34.10.00102
ORF1ab/nsp31603V1603IGtcAtc22AY.390.000049
ORF1ab/nsp31603V1603VgtCgtT22AY.4.50.000215
ORF1ab/nsp31603V1603VgtCgtT22AY.410.000588
ORF1ab/nsp31603V1603delGTC---22AY.430.000009
ORF1ab/nsp31603V1603VgtCgtT22AY.530.000575
ORF1ab/nsp31603V1603VgtCgtT22AY.560.00321
ORF1ab/nsp31603V1603FGtcTtc22AY.610.00021
ORF1ab/nsp31603V1603VgtCgtT22AY.820.002714
ORF1ab/nsp31603V1603VgtCgtT22AY.99.10.003106
ORF1ab/nsp31603V1603IGtcAtc22B.10.000018
ORF1ab/nsp31603V1603AgTcgCc22B.10.000018
ORF1ab/nsp31603V1603FGtcTtc22B.10.000018
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.2070.002364
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.2160.001781
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.2270.008696
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.250.001137
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.2840.000215
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3040.005618
ORF1ab/nsp31603V1603VgtCgtA12B.1.1.3110.000358
ORF1ab/nsp31603V1603VgtCgtT12B.1.1.3110.000358
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3180.000604
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3260.003521
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3370.007194
ORF1ab/nsp31603V1603VgtCgtA22B.1.1.3480.001592
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3620.011236
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.370.000386
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3720.001377
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.3780.014599
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.4110.029412
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.4330.002849
ORF1ab/nsp31603V1603VgtCgtT22B.1.1.5070.017391
ORF1ab/nsp31603V1603AgTcgCc22B.1.1.70.000002
ORF1ab/nsp31603V1603VgtCgtT22B.1.1310.017544
ORF1ab/nsp31603V1603VgtCgtT22B.1.1470.001512
ORF1ab/nsp31603V1603VgtCgtT22B.1.160.80.002577
ORF1ab/nsp31603V1603VgtCgtT22B.1.177.40.000422
ORF1ab/nsp31603V1603delGTC---22B.1.177.540.001213
ORF1ab/nsp31603V1603VgtCgtT22B.1.177.60.001953
ORF1ab/nsp31603V1603VgtCgtT22B.1.177.630.005405
ORF1ab/nsp31603V1603VgtCgtT22B.1.177.830.002963
ORF1ab/nsp31603V1603VgtCgtT22B.1.220.002635
ORF1ab/nsp31603V1603VgtCgtT22B.1.2600.006689
ORF1ab/nsp31603V1603VgtCgtT22B.1.3610.002577
ORF1ab/nsp31603V1603VgtCgtT22B.1.4260.002018
ORF1ab/nsp31603V1603AgTcgCc22B.1.4290.000047
ORF1ab/nsp31603V1603VgtCgtT22B.1.4350.022727
ORF1ab/nsp31603V1603VgtCgtT12B.1.5170.000427
ORF1ab/nsp31603V1603VgtCgtA12B.1.5170.000427
ORF1ab/nsp31603V1603VgtCgtT22B.1.5950.000522
ORF1ab/nsp31603V1603VgtCgtT22B.1.88.10.009615
ORF1ab/nsp31603V1603VgtCgtT22P.1.60.003891
ORF1ab/nsp31603V1603delGTC---11A0.000387
ORF1ab/nsp31603V1603VgtCgtT11A.20.000662
ORF1ab/nsp31603V1603VgtCgtT11A.230.010526
ORF1ab/nsp31603V1603VgtCgtT11A.23.10.000704
ORF1ab/nsp31603V1603VgtCgtT11A.270.001656
ORF1ab/nsp31603V1603GgTcgGc11All0
ORF1ab/nsp31603V1603HGTcCAc11All0
ORF1ab/nsp31603V1603del1Gtc-tc11All0
ORF1ab/nsp31603V1603IGtcAtc11AY.1000.000046
ORF1ab/nsp31603V1603VgtCgtT11AY.1050.000643
ORF1ab/nsp31603V1603VgtCgtT11AY.1070.000466
ORF1ab/nsp31603V1603VgtCgtT11AY.1090.00074
ORF1ab/nsp31603V1603VgtCgtT11AY.116.10.000311
ORF1ab/nsp31603V1603AgTcgCc11AY.1200.000037
ORF1ab/nsp31603V1603FGtcTtc11AY.1200.000037
ORF1ab/nsp31603V1603VgtCgtT11AY.120.20.001285
ORF1ab/nsp31603V1603VgtCgtT11AY.120.2.10.000498
ORF1ab/nsp31603V1603IGtcAtc11AY.130.000161
ORF1ab/nsp31603V1603FGtcTtc11AY.230.00007
ORF1ab/nsp31603V1603delGTC---11AY.240.000431
ORF1ab/nsp31603V1603FGtcTtc11AY.250.000006
ORF1ab/nsp31603V1603AgTcgCc11AY.250.000006
ORF1ab/nsp31603V1603VgtCgtT11AY.300.000396
ORF1ab/nsp31603V1603VgtCgtT11AY.320.000532
ORF1ab/nsp31603V1603AgTcgCc11AY.390.000025
ORF1ab/nsp31603V1603IGtcAtc11AY.4.20.000022
ORF1ab/nsp31603V1603VgtCgtT11AY.4.2.10.000149
ORF1ab/nsp31603V1603FGtcTtc11AY.4.50.000107
ORF1ab/nsp31603V1603delGTC---11AY.4.50.000107
ORF1ab/nsp31603V1603AgTcgCc11AY.420.00004
ORF1ab/nsp31603V1603FGtcTtc11AY.430.000004
ORF1ab/nsp31603V1603delGTC---11AY.46.20.000635
ORF1ab/nsp31603V1603VgtCgtT11AY.46.20.000635
ORF1ab/nsp31603V1603VgtCgtT11AY.5.30.000337
ORF1ab/nsp31603V1603VgtCgtT11AY.500.000799
ORF1ab/nsp31603V1603VgtCgtT11AY.510.000909
ORF1ab/nsp31603V1603VgtCgtA11AY.520.000814
ORF1ab/nsp31603V1603IGtcAtc11AY.540.000095
ORF1ab/nsp31603V1603VgtCgtT11AY.580.000907
ORF1ab/nsp31603V1603VgtCgtT11AY.590.00053
ORF1ab/nsp31603V1603IGtcAtc11AY.590.00053
ORF1ab/nsp31603V1603delGTC---11AY.60.000041
ORF1ab/nsp31603V1603VgtCgtT11AY.600.000938
ORF1ab/nsp31603V1603VgtCgtT11AY.650.000533
ORF1ab/nsp31603V1603delGTC---11AY.660.00107
ORF1ab/nsp31603V1603AgTcgCc11AY.7.10.000113
ORF1ab/nsp31603V1603VgtCgtT11AY.740.000116
ORF1ab/nsp31603V1603VgtCgtT11AY.760.004831
ORF1ab/nsp31603V1603VgtCgtT11AY.780.001541
ORF1ab/nsp31603V1603VgtCgtT11AY.80.000606
ORF1ab/nsp31603V1603VgtCgtT11AY.830.001724
ORF1ab/nsp31603V1603VgtCgtT11AY.880.000884
ORF1ab/nsp31603V1603VgtCgtT11AY.920.000287
ORF1ab/nsp31603V1603VgtCgtT11AZ.20.000821
ORF1ab/nsp31603V1603VgtCgtT11AZ.60.008403
ORF1ab/nsp31603V1603AgTcgCc11B.1.10.000018
ORF1ab/nsp31603V1603IGtcAtc11B.1.10.000018
ORF1ab/nsp31603V1603DgTcgAc11B.1.10.000018
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.100.001115
ORF1ab/nsp31603V1603IGtcAtc11B.1.1.1340.011364
ORF1ab/nsp31603V1603delGTC---11B.1.1.1590.004673
ORF1ab/nsp31603V1603delGTC---11B.1.1.1610.003534
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.1700.001247
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.1980.001468
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.2310.003096
ORF1ab/nsp31603V1603delGTC---11B.1.1.2320.001815
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.2410.00207
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.2430.004082
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.2580.003257
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.3050.003861
ORF1ab/nsp31603V1603delGTC---11B.1.1.3060.000438
ORF1ab/nsp31603V1603AgTcgCc11B.1.1.3060.000438
ORF1ab/nsp31603V1603delGTC---11B.1.1.3110.000358
ORF1ab/nsp31603V1603delGTC---11B.1.1.3150.008475
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.3750.011905
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.3810.04
ORF1ab/nsp31603V1603delGTC---11B.1.1.460.004367
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.4850.016667
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.670.004566
ORF1ab/nsp31603V1603GgTcgGc11B.1.1.70.000001
ORF1ab/nsp31603V1603del2gTCg--11B.1.1.70.000001
ORF1ab/nsp31603V1603DgTcgAc11B.1.1.70.000001
ORF1ab/nsp31603V1603del1Gtc-tc11B.1.1.70.000001
ORF1ab/nsp31603V1603VgtCgtT11B.1.1.740.00431
ORF1ab/nsp31603V1603VgtCgtT11B.1.1100.004525
ORF1ab/nsp31603V1603VgtCgtT11B.1.110.30.000718
ORF1ab/nsp31603V1603VgtCgtT11B.1.130.002375
ORF1ab/nsp31603V1603VgtCgtT11B.1.1570.002985
ORF1ab/nsp31603V1603FGtcTtc11B.1.1600.000031
ORF1ab/nsp31603V1603VgtCgtT11B.1.160.140.002119
ORF1ab/nsp31603V1603IGtcAtc11B.1.160.150.00495
ORF1ab/nsp31603V1603VgtCgtT11B.1.160.160.000929
ORF1ab/nsp31603V1603VgtCgtT11B.1.160.220.006757
ORF1ab/nsp31603V1603delGTC---11B.1.1610.017241
ORF1ab/nsp31603V1603VgtCgtT11B.1.1640.014925
ORF1ab/nsp31603V1603AgTcgCc11B.1.1770.000013
ORF1ab/nsp31603V1603delGTC---11B.1.177.160.000664
ORF1ab/nsp31603V1603delGTC---11B.1.177.190.001431
ORF1ab/nsp31603V1603delGTC---11B.1.177.210.000076
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.30.007634
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.430.001477
ORF1ab/nsp31603V1603delGTC---11B.1.177.510.004566
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.520.001757
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.540.000606
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.560.000668
ORF1ab/nsp31603V1603delGTC---11B.1.177.570.000281
ORF1ab/nsp31603V1603del2GTc--c11B.1.177.580.001332
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.600.000218
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.650.000665
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.720.00339
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.750.001041
ORF1ab/nsp31603V1603delGTC---11B.1.177.810.000189
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.860.000183
ORF1ab/nsp31603V1603VgtCgtT11B.1.177.90.001332
ORF1ab/nsp31603V1603VgtCgtT11B.1.1990.004132
ORF1ab/nsp31603V1603FGtcTtc11B.1.20.000009
ORF1ab/nsp31603V1603AgTcgCc11B.1.20.000009
ORF1ab/nsp31603V1603VgtCgtT11B.1.2060.000816
ORF1ab/nsp31603V1603VgtCgtT11B.1.2130.014925
ORF1ab/nsp31603V1603VgtCgtT11B.1.230.006061
ORF1ab/nsp31603V1603VgtCgtT11B.1.2320.000537
ORF1ab/nsp31603V1603VgtCgtT11B.1.2350.002519
ORF1ab/nsp31603V1603VgtCgtT11B.1.2410.000812
ORF1ab/nsp31603V1603delGTC---11B.1.2580.000067
ORF1ab/nsp31603V1603VgtCgtT11B.1.2650.001271
ORF1ab/nsp31603V1603VgtCgtA11B.1.3010.005917
ORF1ab/nsp31603V1603LGtcCtc11B.1.3110.000275
ORF1ab/nsp31603V1603FGtcTtc11B.1.3360.002439
ORF1ab/nsp31603V1603IGtcAtc11B.1.351.20.000303
ORF1ab/nsp31603V1603VgtCgtT11B.1.351.30.000876
ORF1ab/nsp31603V1603FGtcTtc11B.1.3540.043478
ORF1ab/nsp31603V1603VgtCgtT11B.1.36.160.001425
ORF1ab/nsp31603V1603IGtcAtc11B.1.36.290.000517
ORF1ab/nsp31603V1603IGtcAtc11B.1.36.80.001
ORF1ab/nsp31603V1603VgtCgtT11B.1.36.90.003215
ORF1ab/nsp31603V1603VgtCgtT11B.1.3690.000285
ORF1ab/nsp31603V1603VgtCgtT11B.1.3750.00082
ORF1ab/nsp31603V1603VgtCgtT11B.1.3890.001002
ORF1ab/nsp31603V1603VgtCgtT11B.1.390.003906
ORF1ab/nsp31603V1603VgtCgtT11B.1.3910.001127
ORF1ab/nsp31603V1603IGtcAtc11B.1.4000.000429
ORF1ab/nsp31603V1603AgTcgCc11B.1.4000.000429
ORF1ab/nsp31603V1603VgtCgtT11B.1.4000.000429
ORF1ab/nsp31603V1603VgtCgtT11B.1.4090.000781
ORF1ab/nsp31603V1603VgtCgtT11B.1.4380.006536
ORF1ab/nsp31603V1603IGtcAtc11B.1.438.10.000107
ORF1ab/nsp31603V1603VgtCgtT11B.1.4700.001404
ORF1ab/nsp31603V1603AgTcgCc11B.1.4970.000315
ORF1ab/nsp31603V1603VgtCgtT11B.1.5160.001957
ORF1ab/nsp31603V1603VgtCgtT11B.1.5210.004975
ORF1ab/nsp31603V1603FGtcTtc11B.1.5260.000024
ORF1ab/nsp31603V1603VgtCgtT11B.1.5460.003704
ORF1ab/nsp31603V1603VgtCgtT11B.1.5580.004566
ORF1ab/nsp31603V1603delGTC---11B.1.5610.000397
ORF1ab/nsp31603V1603VgtCgtT11B.1.5820.000491
ORF1ab/nsp31603V1603VgtCgtA11B.1.5870.001898
ORF1ab/nsp31603V1603VgtCgtT11B.1.5880.00091
ORF1ab/nsp31603V1603VgtCgtT11B.1.5900.004545
ORF1ab/nsp31603V1603VgtCgtT11B.1.6040.017241
ORF1ab/nsp31603V1603IGtcAtc11B.1.6120.002653
ORF1ab/nsp31603V1603HGTcCAc11B.1.617.20.000004
ORF1ab/nsp31603V1603DgTcgAc11B.1.617.20.000004
ORF1ab/nsp31603V1603FGtcTtc11B.1.617.20.000004
ORF1ab/nsp31603V1603AgTcgCc11B.1.617.20.000004
ORF1ab/nsp31603V1603IGtcAtc11B.1.6210.000089
ORF1ab/nsp31603V1603delGTC---11B.1.6210.000089
ORF1ab/nsp31603V1603VgtCgtT11B.1.6220.012987
ORF1ab/nsp31603V1603VgtCgtT11B.1.6280.000352
ORF1ab/nsp31603V1603IGtcAtc11B.1.6280.000352
ORF1ab/nsp31603V1603VgtCgtT11B.1.6360.006711
ORF1ab/nsp31603V1603VgtCgtT11B.1.9.40.006135
ORF1ab/nsp31603V1603VgtCgtT11B.1.930.000934
ORF1ab/nsp31603V1603VgtCgtA11B.6.60.000889
ORF1ab/nsp31603V1603IGtCAtT11C.350.000774
ORF1ab/nsp31603V1603VgtCgtT11C.40.01
ORF1ab/nsp31603V1603FGtcTtc11D.20.000075
ORF1ab/nsp31603V1603IGtcAtc11N.30.005814
ORF1ab/nsp31603V1603VgtCgtT11N.50.001767
ORF1ab/nsp31603V1603VgtCgtT11P.1.120.000484
ORF1ab/nsp31603V1603VgtCgtT11P.1.160.000374
ORF1ab/nsp31603V1603VgtCgtT11P.60.003145
ORF1ab/nsp31603V1603VgtCgtT11P.70.004367
ORF1ab/nsp31603V1603delGTC---11Q.10.000126
ORF1ab/nsp31603V1603VgtCgtT11Q.40.000455
ORF1ab/nsp31603V1603delGTC---11U.30.003861
ORF1ab/nsp31603V1603VgtCgtT11Z.10.00289