CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1595

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31595Y1595YY2413YsyntaCtaT3707370717502-7504
ORF1ab/nsp31595Y1595CY2413CnonsyntActGc15215217502-7504
ORF1ab/nsp31595Y1595delY2413deldelTAC---363617502-7504
ORF1ab/nsp31595Y1595XY2413XnonsyntaCtaA24230.9583337502-7504
ORF1ab/nsp31595Y1595XY2413XnonsyntACtGA2410.04166677502-7504
ORF1ab/nsp31595Y1595HY2413HnonsynTacCac111117502-7504
ORF1ab/nsp31595Y1595DY2413DnonsynTacGac1117502-7504
ORF1ab/nsp31595Y1595EY2413EnonsynTaCGaG1117502-7504
ORF1ab/nsp31595Y1595FY2413FnonsyntActTc1117502-7504
ORF1ab/nsp31595Y1595QY2413QnonsynTaCCaA1117502-7504
ORF1ab/nsp31595Y1595SY2413SnonsyntACtCA1117502-7504

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31595Y1595YtaCtaT37073707All0.000709
ORF1ab/nsp31595Y1595YtaCtaT13061306B.1.36.270.996947
ORF1ab/nsp31595Y1595YtaCtaT976976B.1.1.70.000874
ORF1ab/nsp31595Y1595YtaCtaT372372B.1.160.140.788136
ORF1ab/nsp31595Y1595YtaCtaT314314B.1.360.045813
ORF1ab/nsp31595Y1595YtaCtaT259259B.1.1.5190.010285
ORF1ab/nsp31595Y1595CtActGc152152All0.000029
ORF1ab/nsp31595Y1595YtaCtaT5151AY.200.001982
ORF1ab/nsp31595Y1595CtActGc4343B.1.1.70.000038
ORF1ab/nsp31595Y1595YtaCtaT3838B.1.20.000335
ORF1ab/nsp31595Y1595delTAC---3636All0.000007
ORF1ab/nsp31595Y1595YtaCtaT2929B.1.1.2140.001608
ORF1ab/nsp31595Y1595YtaCtaT2828B.1.617.20.000105
ORF1ab/nsp31595Y1595YtaCtaT2626AY.40.00004
ORF1ab/nsp31595Y1595YtaCtaT2525AY.1030.000155
ORF1ab/nsp31595Y1595XtaCtaA2324All0.000004
ORF1ab/nsp31595Y1595XtACtGA124All0
ORF1ab/nsp31595Y1595YtaCtaT2222B.10.000202
ORF1ab/nsp31595Y1595YtaCtaT2121B.1.1.4160.019005
ORF1ab/nsp31595Y1595YtaCtaT1616B.1.5810.150943
ORF1ab/nsp31595Y1595CtActGc1414AY.1030.000087
ORF1ab/nsp31595Y1595CtActGc1414AY.40.000022
ORF1ab/nsp31595Y1595YtaCtaT1313AY.4.20.000282
ORF1ab/nsp31595Y1595delTAC---1313B.1.1.70.000012
ORF1ab/nsp31595Y1595HTacCac1111All0.000002
ORF1ab/nsp31595Y1595YtaCtaT1111B.1.1770.000145
ORF1ab/nsp31595Y1595YtaCtaT1010AY.430.000044
ORF1ab/nsp31595Y1595CtActGc1010AY.440.000061
ORF1ab/nsp31595Y1595YtaCtaT1010B.1.351.20.003026
ORF1ab/nsp31595Y1595YtaCtaT88AY.30.00008
ORF1ab/nsp31595Y1595CtActGc88AY.430.000035
ORF1ab/nsp31595Y1595YtaCtaT88B.1.10.000145
ORF1ab/nsp31595Y1595YtaCtaT88B.1.1600.00025
ORF1ab/nsp31595Y1595CtActGc88B.1.617.20.00003
ORF1ab/nsp31595Y1595YtaCtaT88C.370.000929
ORF1ab/nsp31595Y1595CtActGc77AY.250.000042
ORF1ab/nsp31595Y1595YtaCtaT77AY.250.000042
ORF1ab/nsp31595Y1595YtaCtaT66AY.290.000095
ORF1ab/nsp31595Y1595YtaCtaT66B.1.2580.000399
ORF1ab/nsp31595Y1595CtActGc55AY.1190.000177
ORF1ab/nsp31595Y1595YtaCtaT55AY.440.00003
ORF1ab/nsp31595Y1595YtaCtaT55AY.98.10.000242
ORF1ab/nsp31595Y1595CtActGc55B.10.000046
ORF1ab/nsp31595Y1595YtaCtaT44AY.1020.000106
ORF1ab/nsp31595Y1595CtActGc44AY.1170.000338
ORF1ab/nsp31595Y1595YtaCtaT44AY.1200.000149
ORF1ab/nsp31595Y1595YtaCtaT44AY.260.000113
ORF1ab/nsp31595Y1595YtaCtaT44AY.29.10.000882
ORF1ab/nsp31595Y1595YtaCtaT44B.1.1.2160.003562
ORF1ab/nsp31595Y1595HTacCac44B.1.1.70.000004
ORF1ab/nsp31595Y1595YtaCtaT44B.1.1.700.001364
ORF1ab/nsp31595Y1595YtaCtaT44B.1.4060.024242
ORF1ab/nsp31595Y1595YtaCtaT44B.1.4680.022857
ORF1ab/nsp31595Y1595CtActGc33AY.200.000117
ORF1ab/nsp31595Y1595YtaCtaT33AY.330.0002
ORF1ab/nsp31595Y1595CtActGc33AY.980.000237
ORF1ab/nsp31595Y1595CtActGc33B0.000383
ORF1ab/nsp31595Y1595XtaCtaA33B.10.000027
ORF1ab/nsp31595Y1595delTAC---33B.10.000027
ORF1ab/nsp31595Y1595YtaCtaT33B.1.1.3180.000905
ORF1ab/nsp31595Y1595YtaCtaT33B.1.2210.000213
ORF1ab/nsp31595Y1595YtaCtaT33B.1.2600.010033
ORF1ab/nsp31595Y1595YtaCtaT33B.1.3190.009146
ORF1ab/nsp31595Y1595YtaCtaT33B.1.36.170.001482
ORF1ab/nsp31595Y1595YtaCtaT33B.1.4290.000071
ORF1ab/nsp31595Y1595delTAC---22A0.000774
ORF1ab/nsp31595Y1595CtActGc22AY.1000.000092
ORF1ab/nsp31595Y1595CtActGc22AY.1020.000053
ORF1ab/nsp31595Y1595CtActGc22AY.1200.000074
ORF1ab/nsp31595Y1595delTAC---22AY.250.000012
ORF1ab/nsp31595Y1595CtActGc22AY.30.00002
ORF1ab/nsp31595Y1595delTAC---22AY.40.000003
ORF1ab/nsp31595Y1595YtaCtaT22AY.980.000158
ORF1ab/nsp31595Y1595XtaCtaA22B.1.10.000036
ORF1ab/nsp31595Y1595YtaCtaT22B.1.177.310.022989
ORF1ab/nsp31595Y1595YtaCtaT22B.1.177.70.00033
ORF1ab/nsp31595Y1595HTacCac22B.1.20.000018
ORF1ab/nsp31595Y1595YtaCtaT22B.1.2430.000139
ORF1ab/nsp31595Y1595YtaCtaT22B.1.36.160.002849
ORF1ab/nsp31595Y1595YtaCtaT22B.1.4560.006536
ORF1ab/nsp31595Y1595YtaCtaT22B.310.007463
ORF1ab/nsp31595Y1595YtaCtaT22Q.80.00033
ORF1ab/nsp31595Y1595YtaCtaT11A.20.000662
ORF1ab/nsp31595Y1595StACtCA11All0
ORF1ab/nsp31595Y1595DTacGac11All0
ORF1ab/nsp31595Y1595ETaCGaG11All0
ORF1ab/nsp31595Y1595FtActTc11All0
ORF1ab/nsp31595Y1595QTaCCaA11All0
ORF1ab/nsp31595Y1595CtActGc11AY.10.000396
ORF1ab/nsp31595Y1595CtActGc11AY.1070.000466
ORF1ab/nsp31595Y1595YtaCtaT11AY.1090.00074
ORF1ab/nsp31595Y1595YtaCtaT11AY.116.10.000311
ORF1ab/nsp31595Y1595YtaCtaT11AY.1170.000085
ORF1ab/nsp31595Y1595CtActGc11AY.1180.000063
ORF1ab/nsp31595Y1595YtaCtaT11AY.120.000316
ORF1ab/nsp31595Y1595YtaCtaT11AY.140.000088
ORF1ab/nsp31595Y1595CtActGc11AY.23.10.000417
ORF1ab/nsp31595Y1595delTAC---11AY.240.000431
ORF1ab/nsp31595Y1595CtActGc11AY.290.000016
ORF1ab/nsp31595Y1595YtaCtaT11AY.34.10.00051
ORF1ab/nsp31595Y1595YtaCtaT11AY.350.000233
ORF1ab/nsp31595Y1595YtaCtaT11AY.360.000148
ORF1ab/nsp31595Y1595YtaCtaT11AY.390.000025
ORF1ab/nsp31595Y1595XtaCtaA11AY.390.000025
ORF1ab/nsp31595Y1595HTacCac11AY.40.000002
ORF1ab/nsp31595Y1595CtActGc11AY.4.2.10.000149
ORF1ab/nsp31595Y1595YtaCtaT11AY.4.2.10.000149
ORF1ab/nsp31595Y1595CtActGc11AY.4.50.000107
ORF1ab/nsp31595Y1595delTAC---11AY.430.000004
ORF1ab/nsp31595Y1595QTaCCaA11AY.440.000006
ORF1ab/nsp31595Y1595CtActGc11AY.50.000021
ORF1ab/nsp31595Y1595YtaCtaT11AY.50.000021
ORF1ab/nsp31595Y1595YtaCtaT11AY.520.000814
ORF1ab/nsp31595Y1595YtaCtaT11AY.550.000917
ORF1ab/nsp31595Y1595FtActTc11AY.590.00053
ORF1ab/nsp31595Y1595YtaCtaT11AY.610.000105
ORF1ab/nsp31595Y1595delTAC---11AY.660.00107
ORF1ab/nsp31595Y1595YtaCtaT11AY.840.000437
ORF1ab/nsp31595Y1595YtaCtaT11AY.90.000068
ORF1ab/nsp31595Y1595YtaCtaT11AY.9.10.000084
ORF1ab/nsp31595Y1595CtActGc11AY.9.10.000084
ORF1ab/nsp31595Y1595YtaCtaT11AY.99.20.000092
ORF1ab/nsp31595Y1595XtaCtaA11B0.000128
ORF1ab/nsp31595Y1595HTacCac11B.10.000009
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.1710.003676
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.1960.005714
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.2010.02439
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.250.000569
ORF1ab/nsp31595Y1595delTAC---11B.1.1.3060.000438
ORF1ab/nsp31595Y1595delTAC---11B.1.1.3150.008475
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.330.000421
ORF1ab/nsp31595Y1595XtaCtaA11B.1.1.390.00051
ORF1ab/nsp31595Y1595XtaCtaA11B.1.1.4200.001006
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.450.014085
ORF1ab/nsp31595Y1595delTAC---11B.1.1.460.004367
ORF1ab/nsp31595Y1595XtaCtaA11B.1.1.5070.008696
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.5230.001563
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.5250.005464
ORF1ab/nsp31595Y1595XtaCtaA11B.1.1.70.000001
ORF1ab/nsp31595Y1595ETaCGaG11B.1.1.70.000001
ORF1ab/nsp31595Y1595XtaCtaA11B.1.160.150.00495
ORF1ab/nsp31595Y1595XtaCtaA11B.1.160.160.000929
ORF1ab/nsp31595Y1595YtaCtaT11B.1.160.290.004219
ORF1ab/nsp31595Y1595YtaCtaT11B.1.160.80.001289
ORF1ab/nsp31595Y1595CtActGc11B.1.1770.000013
ORF1ab/nsp31595Y1595XtaCtaA11B.1.1770.000013
ORF1ab/nsp31595Y1595delTAC---11B.1.1770.000013
ORF1ab/nsp31595Y1595delTAC---11B.1.177.210.000076
ORF1ab/nsp31595Y1595XtaCtaA11B.1.177.440.000519
ORF1ab/nsp31595Y1595delTAC---11B.1.177.510.004566
ORF1ab/nsp31595Y1595YtaCtaT11B.1.177.510.004566
ORF1ab/nsp31595Y1595delTAC---11B.1.177.540.000606
ORF1ab/nsp31595Y1595YtaCtaT11B.1.177.810.000189
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1950.005025
ORF1ab/nsp31595Y1595XtaCtaA11B.1.20.000009
ORF1ab/nsp31595Y1595CtActGc11B.1.2210.000071
ORF1ab/nsp31595Y1595XtaCtaA11B.1.2210.000071
ORF1ab/nsp31595Y1595delTAC---11B.1.230.006061
ORF1ab/nsp31595Y1595DTacGac11B.1.2360.002053
ORF1ab/nsp31595Y1595YtaCtaT11B.1.2400.000216
ORF1ab/nsp31595Y1595delTAC---11B.1.2580.000067
ORF1ab/nsp31595Y1595YtaCtaT11B.1.3510.00003
ORF1ab/nsp31595Y1595delTAC---11B.1.3540.043478
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.220.001208
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.280.005747
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.290.000517
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.340.021277
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.360.000602
ORF1ab/nsp31595Y1595HTacCac11B.1.3690.000285
ORF1ab/nsp31595Y1595XtaCtaA11B.1.4080.00369
ORF1ab/nsp31595Y1595YtaCtaT11B.1.416.10.001563
ORF1ab/nsp31595Y1595XtaCtaA11B.1.4290.000024
ORF1ab/nsp31595Y1595YtaCtaT11B.1.4390.005917
ORF1ab/nsp31595Y1595StACtCA11B.1.4970.000315
ORF1ab/nsp31595Y1595XtaCtaA11B.1.5640.000426
ORF1ab/nsp31595Y1595YtaCtaT11B.1.5820.000491
ORF1ab/nsp31595Y1595XtaCtaA11B.1.5890.007576
ORF1ab/nsp31595Y1595CtActGc11B.1.5960.000087
ORF1ab/nsp31595Y1595CtActGc11B.1.617.10.000129
ORF1ab/nsp31595Y1595XtaCtaA11B.1.617.20.000004
ORF1ab/nsp31595Y1595delTAC---11B.1.6210.000089
ORF1ab/nsp31595Y1595YtaCtaT11B.1.621.10.000506
ORF1ab/nsp31595Y1595CtActGc11B.1.621.10.000506
ORF1ab/nsp31595Y1595YtaCtaT11B.1.6370.000073
ORF1ab/nsp31595Y1595YtaCtaT11B.1.930.000934
ORF1ab/nsp31595Y1595XtACtGA11C.350.000774
ORF1ab/nsp31595Y1595CtActGc11C.36.30.000567
ORF1ab/nsp31595Y1595HTacCac11D.20.000075
ORF1ab/nsp31595Y1595YtaCtaT11G.10.041667
ORF1ab/nsp31595Y1595YtaCtaT11P.10.000016
ORF1ab/nsp31595Y1595XtaCtaA11P.10.000016
ORF1ab/nsp31595Y1595HTacCac11P.10.000016
ORF1ab/nsp31595Y1595CtActGc11P.10.000016
ORF1ab/nsp31595Y1595CtActGc11P.1.80.004785
ORF1ab/nsp31595Y1595YtaCtaT11Q.30.000145
ORF1ab/nsp31595Y1595YtaCtaT11Q.70.001111