CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1587 | N1587S | N2405S | nonsyn | aAt | aGt | 1608 | 1608 | 1 | 7478-7480 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1608 | 1608 | All | 0.000308 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 443 | 443 | B.1.1.7 | 0.000397 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 197 | 197 | AV.1 | 0.994949 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 148 | 148 | B.1.2 | 0.001303 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 124 | 124 | B.35 | 0.96875 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 81 | 81 | AY.4 | 0.000126 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 75 | 75 | AY.43 | 0.000332 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 36 | 36 | B.1.1.141 | 0.072435 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 31 | 31 | B.1.525 | 0.003508 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 30 | 30 | B.1.1.222 | 0.00612 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 23 | 23 | AA.2 | 0.176923 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 14 | 14 | AY.60 | 0.013133 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 8 | 8 | B.1.632 | 0.053691 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 4 | 4 | B.1.36.35 | 0.010417 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | B.1.1.354 | 0.013158 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | B.1.227 | 0.142857 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.1.181 | 0.009091 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.177.19 | 0.002861 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.40 | 0.034483 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1587 | N1587S | aAt | aGt | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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