CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1587

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31587N1587SN2405SnonsynaAtaGt1608160817478-7480
ORF1ab/nsp31587N1587NN2405NsynaaTaaC18618617478-7480
ORF1ab/nsp31587N1587KN2405KnonsynaaTaaG1221060.8688527478-7480
ORF1ab/nsp31587N1587KN2405KnonsynaaTaaA122160.1311487478-7480
ORF1ab/nsp31587N1587DN2405DnonsynAatGat10610617478-7480
ORF1ab/nsp31587N1587TN2405TnonsynaAtaCt54520.9629637478-7480
ORF1ab/nsp31587N1587TN2405TnonsynaATaCA5420.0370377478-7480
ORF1ab/nsp31587N1587delN2405deldelAAT---353517478-7480
ORF1ab/nsp31587N1587IN2405InonsynaAtaTt9917478-7480
ORF1ab/nsp31587N1587YN2405YnonsynAatTat4417478-7480
ORF1ab/nsp31587N1587HN2405HnonsynAatCat3317478-7480
ORF1ab/nsp31587N1587del1N2405del1delaaTaa-320.6666677478-7480
ORF1ab/nsp31587N1587del1N2405del1delAat-at310.3333337478-7480
ORF1ab/nsp31587N1587CN2405CnonsynAAtTGt1117478-7480
ORF1ab/nsp31587N1587del2N2405del2delAAt--t1117478-7480

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31587N1587SaAtaGt16081608All0.000308
ORF1ab/nsp31587N1587SaAtaGt443443B.1.1.70.000397
ORF1ab/nsp31587N1587SaAtaGt197197AV.10.994949
ORF1ab/nsp31587N1587NaaTaaC186186All0.000036
ORF1ab/nsp31587N1587SaAtaGt148148B.1.20.001303
ORF1ab/nsp31587N1587SaAtaGt124124B.350.96875
ORF1ab/nsp31587N1587KaaTaaG106122All0.00002
ORF1ab/nsp31587N1587KaaTaaA16122All0.000003
ORF1ab/nsp31587N1587DAatGat106106All0.00002
ORF1ab/nsp31587N1587SaAtaGt8181AY.40.000126
ORF1ab/nsp31587N1587SaAtaGt7575AY.430.000332
ORF1ab/nsp31587N1587KaaTaaG7575B.1.177.210.005735
ORF1ab/nsp31587N1587TaAtaCt5254All0.00001
ORF1ab/nsp31587N1587TaATaCA254All0
ORF1ab/nsp31587N1587SaAtaGt3636B.1.1.1410.072435
ORF1ab/nsp31587N1587delAAT---3535All0.000007
ORF1ab/nsp31587N1587SaAtaGt3131B.1.5250.003508
ORF1ab/nsp31587N1587TaAtaCt3030AY.440.000183
ORF1ab/nsp31587N1587SaAtaGt3030B.1.1.2220.00612
ORF1ab/nsp31587N1587SaAtaGt2929AY.30.000288
ORF1ab/nsp31587N1587NaaTaaC2828AY.40.000044
ORF1ab/nsp31587N1587SaAtaGt2525B.1.3510.000743
ORF1ab/nsp31587N1587SaAtaGt2424AY.1030.000149
ORF1ab/nsp31587N1587SaAtaGt2323AA.20.176923
ORF1ab/nsp31587N1587SaAtaGt2323B.1.617.20.000087
ORF1ab/nsp31587N1587NaaTaaC2222B.1.1.70.00002
ORF1ab/nsp31587N1587SaAtaGt2020B.10.000183
ORF1ab/nsp31587N1587DAatGat1919B.1.1.70.000017
ORF1ab/nsp31587N1587SaAtaGt1919P.10.000299
ORF1ab/nsp31587N1587SaAtaGt1818AY.440.00011
ORF1ab/nsp31587N1587SaAtaGt1616AY.250.000096
ORF1ab/nsp31587N1587SaAtaGt1616B.1.1770.000211
ORF1ab/nsp31587N1587SaAtaGt1414AY.600.013133
ORF1ab/nsp31587N1587delAAT---1313B.1.1.70.000012
ORF1ab/nsp31587N1587DAatGat1212AY.250.000072
ORF1ab/nsp31587N1587NaaTaaC1111AY.250.000066
ORF1ab/nsp31587N1587SaAtaGt1111B.1.4290.000259
ORF1ab/nsp31587N1587NaaTaaC1111B.1.617.20.000041
ORF1ab/nsp31587N1587KaaTaaA1010B.1.6370.000731
ORF1ab/nsp31587N1587IaAtaTt99All0.000002
ORF1ab/nsp31587N1587KaaTaaG99AY.1020.000239
ORF1ab/nsp31587N1587NaaTaaC99AY.440.000055
ORF1ab/nsp31587N1587SaAtaGt99B.1.5260.000212
ORF1ab/nsp31587N1587NaaTaaC88AY.1020.000212
ORF1ab/nsp31587N1587SaAtaGt88AY.4.20.000174
ORF1ab/nsp31587N1587SaAtaGt88B.1.10.000145
ORF1ab/nsp31587N1587SaAtaGt88B.1.6320.053691
ORF1ab/nsp31587N1587DAatGat77B.10.000064
ORF1ab/nsp31587N1587NaaTaaC77B.1.1.2140.000388
ORF1ab/nsp31587N1587KaaTaaG77B.1.1.70.000006
ORF1ab/nsp31587N1587DAatGat77B.1.177.440.003633
ORF1ab/nsp31587N1587SaAtaGt66AY.46.50.00119
ORF1ab/nsp31587N1587DAatGat66B.1.20.000053
ORF1ab/nsp31587N1587NaaTaaC66B.1.20.000053
ORF1ab/nsp31587N1587NaaTaaC55AY.1190.000177
ORF1ab/nsp31587N1587DAatGat55AY.40.000008
ORF1ab/nsp31587N1587SaAtaGt55AY.590.002648
ORF1ab/nsp31587N1587NaaTaaC55B.1.1.330.002104
ORF1ab/nsp31587N1587TaAtaCt55B.1.1600.000156
ORF1ab/nsp31587N1587SaAtaGt55B.1.2340.00066
ORF1ab/nsp31587N1587SaAtaGt55B.1.4270.000252
ORF1ab/nsp31587N1587SaAtaGt55P.1.140.000239
ORF1ab/nsp31587N1587YAatTat44All0.000001
ORF1ab/nsp31587N1587NaaTaaC44AY.1200.000149
ORF1ab/nsp31587N1587SaAtaGt44AY.200.000155
ORF1ab/nsp31587N1587SaAtaGt44AY.290.000063
ORF1ab/nsp31587N1587SaAtaGt44AY.300.001583
ORF1ab/nsp31587N1587SaAtaGt44AY.390.000099
ORF1ab/nsp31587N1587KaaTaaG44AY.40.000006
ORF1ab/nsp31587N1587NaaTaaC44B.10.000037
ORF1ab/nsp31587N1587NaaTaaC44B.1.10.000073
ORF1ab/nsp31587N1587NaaTaaC44B.1.1770.000053
ORF1ab/nsp31587N1587SaAtaGt44B.1.2430.000278
ORF1ab/nsp31587N1587SaAtaGt44B.1.2580.000266
ORF1ab/nsp31587N1587SaAtaGt44B.1.36.350.010417
ORF1ab/nsp31587N1587NaaTaaC44B.1.5260.000094
ORF1ab/nsp31587N1587TaAtaCt44B.1.617.20.000015
ORF1ab/nsp31587N1587HAatCat33All0.000001
ORF1ab/nsp31587N1587del1aaTaa-23All0
ORF1ab/nsp31587N1587del1Aat-at13All0
ORF1ab/nsp31587N1587NaaTaaC33AY.1030.000019
ORF1ab/nsp31587N1587SaAtaGt33AY.1130.000427
ORF1ab/nsp31587N1587NaaTaaC33AY.140.000264
ORF1ab/nsp31587N1587SaAtaGt33AY.3.10.000256
ORF1ab/nsp31587N1587SaAtaGt33AY.340.000291
ORF1ab/nsp31587N1587NaaTaaC33AY.4.50.000322
ORF1ab/nsp31587N1587DAatGat33AY.430.000013
ORF1ab/nsp31587N1587NaaTaaC33AY.450.000365
ORF1ab/nsp31587N1587TaAtaCt33AY.460.000312
ORF1ab/nsp31587N1587NaaTaaC33AY.50.000062
ORF1ab/nsp31587N1587SaAtaGt33AY.750.000168
ORF1ab/nsp31587N1587NaaTaaC33AY.9.20.00011
ORF1ab/nsp31587N1587SaAtaGt33AY.9.20.00011
ORF1ab/nsp31587N1587delAAT---33B.10.000027
ORF1ab/nsp31587N1587SaAtaGt33B.1.1.3540.013158
ORF1ab/nsp31587N1587SaAtaGt33B.1.2270.142857
ORF1ab/nsp31587N1587DAatGat33B.1.3510.000089
ORF1ab/nsp31587N1587NaaTaaC33B.1.466.20.001174
ORF1ab/nsp31587N1587SaAtaGt33B.1.4990.003151
ORF1ab/nsp31587N1587SaAtaGt33B.1.5750.00091
ORF1ab/nsp31587N1587DAatGat33B.1.617.20.000011
ORF1ab/nsp31587N1587delAAT---22A0.000774
ORF1ab/nsp31587N1587NaaTaaC22AE.80.000978
ORF1ab/nsp31587N1587TaAtaCt22AY.1020.000053
ORF1ab/nsp31587N1587SaAtaGt22AY.1020.000053
ORF1ab/nsp31587N1587DAatGat22AY.1030.000012
ORF1ab/nsp31587N1587DAatGat22AY.1100.000225
ORF1ab/nsp31587N1587SaAtaGt22AY.1170.000169
ORF1ab/nsp31587N1587DAatGat22AY.1190.000071
ORF1ab/nsp31587N1587SaAtaGt22AY.1190.000071
ORF1ab/nsp31587N1587delAAT---22AY.250.000012
ORF1ab/nsp31587N1587IaAtaTt22AY.250.000012
ORF1ab/nsp31587N1587DAatGat22AY.290.000032
ORF1ab/nsp31587N1587NaaTaaC22AY.30.00002
ORF1ab/nsp31587N1587KaaTaaG22AY.30.00002
ORF1ab/nsp31587N1587NaaTaaC22AY.330.000134
ORF1ab/nsp31587N1587NaaTaaC22AY.390.000049
ORF1ab/nsp31587N1587delAAT---22AY.40.000003
ORF1ab/nsp31587N1587SaAtaGt22AY.420.00008
ORF1ab/nsp31587N1587KaaTaaG22AY.440.000012
ORF1ab/nsp31587N1587SaAtaGt22AY.450.000243
ORF1ab/nsp31587N1587SaAtaGt22AY.5.30.000675
ORF1ab/nsp31587N1587SaAtaGt22AY.540.000191
ORF1ab/nsp31587N1587NaaTaaC22AY.540.000191
ORF1ab/nsp31587N1587KaaTaaA22B.1.10.000036
ORF1ab/nsp31587N1587DAatGat22B.1.10.000036
ORF1ab/nsp31587N1587SaAtaGt22B.1.1.1810.009091
ORF1ab/nsp31587N1587TaAtaCt22B.1.1.70.000002
ORF1ab/nsp31587N1587SaAtaGt22B.1.1600.000062
ORF1ab/nsp31587N1587KaaTaaA22B.1.1600.000062
ORF1ab/nsp31587N1587IaAtaTt22B.1.1770.000026
ORF1ab/nsp31587N1587DAatGat22B.1.1770.000026
ORF1ab/nsp31587N1587SaAtaGt22B.1.177.190.002861
ORF1ab/nsp31587N1587SaAtaGt22B.1.177.530.004785
ORF1ab/nsp31587N1587DAatGat22B.1.177.650.001331
ORF1ab/nsp31587N1587DAatGat22B.1.177.80.001505
ORF1ab/nsp31587N1587HAatCat22B.1.20.000018
ORF1ab/nsp31587N1587SaAtaGt22B.1.258.170.000208
ORF1ab/nsp31587N1587TaATaCA22B.1.5260.000047
ORF1ab/nsp31587N1587SaAtaGt22B.1.6090.000959
ORF1ab/nsp31587N1587DAatGat22B.1.617.10.000258
ORF1ab/nsp31587N1587SaAtaGt22B.1.6210.000177
ORF1ab/nsp31587N1587IaAtaTt22C.140.008658
ORF1ab/nsp31587N1587SaAtaGt22C.370.000232
ORF1ab/nsp31587N1587SaAtaGt11A0.000387
ORF1ab/nsp31587N1587del2AAt--t11All0
ORF1ab/nsp31587N1587CAAtTGt11All0
ORF1ab/nsp31587N1587DAatGat11AU.30.00211
ORF1ab/nsp31587N1587SaAtaGt11AU.30.00211
ORF1ab/nsp31587N1587TaAtaCt11AY.1000.000046
ORF1ab/nsp31587N1587SaAtaGt11AY.1000.000046
ORF1ab/nsp31587N1587TaAtaCt11AY.1030.000006
ORF1ab/nsp31587N1587DAatGat11AY.1130.000142
ORF1ab/nsp31587N1587DAatGat11AY.1210.000135
ORF1ab/nsp31587N1587KaaTaaG11AY.200.000039
ORF1ab/nsp31587N1587SaAtaGt11AY.230.00007
ORF1ab/nsp31587N1587delAAT---11AY.240.000431
ORF1ab/nsp31587N1587KaaTaaA11AY.250.000006
ORF1ab/nsp31587N1587DAatGat11AY.29.10.000221
ORF1ab/nsp31587N1587DAatGat11AY.30.00001
ORF1ab/nsp31587N1587SaAtaGt11AY.330.000067
ORF1ab/nsp31587N1587SaAtaGt11AY.34.10.00051
ORF1ab/nsp31587N1587TaAtaCt11AY.390.000025
ORF1ab/nsp31587N1587NaaTaaC11AY.4.2.10.000149
ORF1ab/nsp31587N1587DAatGat11AY.4.40.000409
ORF1ab/nsp31587N1587SaAtaGt11AY.4.50.000107
ORF1ab/nsp31587N1587delAAT---11AY.430.000004
ORF1ab/nsp31587N1587NaaTaaC11AY.430.000004
ORF1ab/nsp31587N1587SaAtaGt11AY.460.000104
ORF1ab/nsp31587N1587DAatGat11AY.470.000031
ORF1ab/nsp31587N1587NaaTaaC11AY.470.000031
ORF1ab/nsp31587N1587SaAtaGt11AY.50.000021
ORF1ab/nsp31587N1587SaAtaGt11AY.530.000288
ORF1ab/nsp31587N1587NaaTaaC11AY.610.000105
ORF1ab/nsp31587N1587NaaTaaC11AY.660.00107
ORF1ab/nsp31587N1587delAAT---11AY.660.00107
ORF1ab/nsp31587N1587NaaTaaC11AY.670.000464
ORF1ab/nsp31587N1587SaAtaGt11AY.680.000274
ORF1ab/nsp31587N1587DAatGat11AY.70.000196
ORF1ab/nsp31587N1587SaAtaGt11AY.7.10.000113
ORF1ab/nsp31587N1587CAAtTGt11AY.790.001211
ORF1ab/nsp31587N1587SaAtaGt11AY.840.000437
ORF1ab/nsp31587N1587NaaTaaC11AY.890.004902
ORF1ab/nsp31587N1587KaaTaaG11AY.9.20.000037
ORF1ab/nsp31587N1587NaaTaaC11AY.98.10.000048
ORF1ab/nsp31587N1587NaaTaaC11AY.990.001049
ORF1ab/nsp31587N1587SaAtaGt11AY.99.20.000092
ORF1ab/nsp31587N1587SaAtaGt11B0.000128
ORF1ab/nsp31587N1587KaaTaaA11B.10.000009
ORF1ab/nsp31587N1587delAAT---11B.1.10.000018
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.10.000327
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.10.000327
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.1350.004695
ORF1ab/nsp31587N1587KaaTaaG11B.1.1.2140.000055
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2140.000055
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.2220.000204
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2720.005208
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2800.003086
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2940.001266
ORF1ab/nsp31587N1587del1aaTaa-11B.1.1.3060.000438
ORF1ab/nsp31587N1587DAatGat11B.1.1.3060.000438
ORF1ab/nsp31587N1587DAatGat11B.1.1.3110.000358
ORF1ab/nsp31587N1587delAAT---11B.1.1.3150.008475
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.3170.000412
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.370.000193
ORF1ab/nsp31587N1587DAatGat11B.1.1.3850.004464
ORF1ab/nsp31587N1587IaAtaTt11B.1.1.390.00051
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.400.034483
ORF1ab/nsp31587N1587YAatTat11B.1.1.4130.006897
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.4130.006897
ORF1ab/nsp31587N1587delAAT---11B.1.1.460.004367
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.500.000679
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.5190.00004
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.5240.020833
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.630.000386
ORF1ab/nsp31587N1587del1Aat-at11B.1.1.70.000001
ORF1ab/nsp31587N1587IaAtaTt11B.1.1.70.000001
ORF1ab/nsp31587N1587HAatCat11B.1.1.70.000001
ORF1ab/nsp31587N1587YAatTat11B.1.1600.000031
ORF1ab/nsp31587N1587NaaTaaC11B.1.160.160.000929
ORF1ab/nsp31587N1587YAatTat11B.1.160.300.002976
ORF1ab/nsp31587N1587DAatGat11B.1.160.320.004292
ORF1ab/nsp31587N1587NaaTaaC11B.1.1610.017241
ORF1ab/nsp31587N1587TaAtaCt11B.1.1770.000013
ORF1ab/nsp31587N1587delAAT---11B.1.1770.000013
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.160.000664
ORF1ab/nsp31587N1587DAatGat11B.1.177.190.001431
ORF1ab/nsp31587N1587delAAT---11B.1.177.210.000076
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.480.003125
ORF1ab/nsp31587N1587delAAT---11B.1.177.510.004566
ORF1ab/nsp31587N1587delAAT---11B.1.177.540.000606
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.650.000665
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.690.001484
ORF1ab/nsp31587N1587NaaTaaC11B.1.177.810.000189
ORF1ab/nsp31587N1587IaAtaTt11B.1.20.000009
ORF1ab/nsp31587N1587del1aaTaa-11B.1.20.000009
ORF1ab/nsp31587N1587SaAtaGt11B.1.2180.005155
ORF1ab/nsp31587N1587SaAtaGt11B.1.220.001318
ORF1ab/nsp31587N1587NaaTaaC11B.1.2210.000071
ORF1ab/nsp31587N1587delAAT---11B.1.230.006061
ORF1ab/nsp31587N1587NaaTaaC11B.1.2340.000132
ORF1ab/nsp31587N1587YAatTat11B.1.2400.000216
ORF1ab/nsp31587N1587TaAtaCt11B.1.2580.000067
ORF1ab/nsp31587N1587delAAT---11B.1.2580.000067
ORF1ab/nsp31587N1587SaAtaGt11B.1.258.20.004505
ORF1ab/nsp31587N1587SaAtaGt11B.1.2640.012346
ORF1ab/nsp31587N1587SaAtaGt11B.1.2790.000514
ORF1ab/nsp31587N1587SaAtaGt11B.1.3060.005714
ORF1ab/nsp31587N1587KaaTaaG11B.1.3510.00003
ORF1ab/nsp31587N1587DAatGat11B.1.351.20.000303
ORF1ab/nsp31587N1587SaAtaGt11B.1.351.30.000876
ORF1ab/nsp31587N1587DAatGat11B.1.3610.001289
ORF1ab/nsp31587N1587SaAtaGt11B.1.3690.000285
ORF1ab/nsp31587N1587SaAtaGt11B.1.3750.00082
ORF1ab/nsp31587N1587SaAtaGt11B.1.3960.000706
ORF1ab/nsp31587N1587SaAtaGt11B.1.4000.000429
ORF1ab/nsp31587N1587KaaTaaG11B.1.4270.00005
ORF1ab/nsp31587N1587DAatGat11B.1.4290.000024
ORF1ab/nsp31587N1587SaAtaGt11B.1.4330.003195
ORF1ab/nsp31587N1587SaAtaGt11B.1.4380.006536
ORF1ab/nsp31587N1587TaAtaCt11B.1.466.20.000391
ORF1ab/nsp31587N1587KaaTaaG11B.1.466.20.000391
ORF1ab/nsp31587N1587SaAtaGt11B.1.5090.000866
ORF1ab/nsp31587N1587DAatGat11B.1.5410.004425
ORF1ab/nsp31587N1587SaAtaGt11B.1.5510.00129
ORF1ab/nsp31587N1587del2AAt--t11B.1.5610.000397
ORF1ab/nsp31587N1587SaAtaGt11B.1.5640.000426
ORF1ab/nsp31587N1587NaaTaaC11B.1.5750.000303
ORF1ab/nsp31587N1587DAatGat11B.1.5750.000303
ORF1ab/nsp31587N1587SaAtaGt11B.1.5820.000491
ORF1ab/nsp31587N1587NaaTaaC11B.1.5950.000261
ORF1ab/nsp31587N1587SaAtaGt11B.1.5960.000087
ORF1ab/nsp31587N1587SaAtaGt11B.1.617.10.000129
ORF1ab/nsp31587N1587KaaTaaG11B.1.617.20.000004
ORF1ab/nsp31587N1587delAAT---11B.1.6210.000089
ORF1ab/nsp31587N1587DAatGat11B.1.6210.000089
ORF1ab/nsp31587N1587SaAtaGt11B.1.6370.000073
ORF1ab/nsp31587N1587DAatGat11B.230.002924
ORF1ab/nsp31587N1587SaAtaGt11B.400.000364
ORF1ab/nsp31587N1587DAatGat11B.60.00091
ORF1ab/nsp31587N1587SaAtaGt11C.140.004329
ORF1ab/nsp31587N1587SaAtaGt11C.180.002591
ORF1ab/nsp31587N1587SaAtaGt11C.350.000774
ORF1ab/nsp31587N1587SaAtaGt11D.20.000075
ORF1ab/nsp31587N1587DAatGat11P.10.000016
ORF1ab/nsp31587N1587SaAtaGt11P.1.100.000269
ORF1ab/nsp31587N1587NaaTaaC11P.1.140.000048
ORF1ab/nsp31587N1587SaAtaGt11P.1.150.000232
ORF1ab/nsp31587N1587SaAtaGt11P.1.160.000374
ORF1ab/nsp31587N1587DAatGat11P.1.70.000319
ORF1ab/nsp31587N1587SaAtaGt11P.20.000187
ORF1ab/nsp31587N1587SaAtaGt11P.30.001595
ORF1ab/nsp31587N1587NaaTaaC11Q.20.000613
ORF1ab/nsp31587N1587NaaTaaC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.