CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1587

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31587N1587SN2405SnonsynaAtaGt1608160817478-7480
ORF1ab/nsp31587N1587NN2405NsynaaTaaC18618617478-7480
ORF1ab/nsp31587N1587KN2405KnonsynaaTaaG1221060.8688527478-7480
ORF1ab/nsp31587N1587KN2405KnonsynaaTaaA122160.1311487478-7480
ORF1ab/nsp31587N1587DN2405DnonsynAatGat10610617478-7480
ORF1ab/nsp31587N1587TN2405TnonsynaAtaCt54520.9629637478-7480
ORF1ab/nsp31587N1587TN2405TnonsynaATaCA5420.0370377478-7480
ORF1ab/nsp31587N1587delN2405deldelAAT---353517478-7480
ORF1ab/nsp31587N1587IN2405InonsynaAtaTt9917478-7480
ORF1ab/nsp31587N1587YN2405YnonsynAatTat4417478-7480
ORF1ab/nsp31587N1587HN2405HnonsynAatCat3317478-7480
ORF1ab/nsp31587N1587del1N2405del1delaaTaa-320.6666677478-7480
ORF1ab/nsp31587N1587del1N2405del1delAat-at310.3333337478-7480
ORF1ab/nsp31587N1587CN2405CnonsynAAtTGt1117478-7480
ORF1ab/nsp31587N1587del2N2405del2delAAt--t1117478-7480

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31587N1587SaAtaGt16081608All0.000308
ORF1ab/nsp31587N1587SaAtaGt443443B.1.1.70.000397
ORF1ab/nsp31587N1587SaAtaGt197197AV.10.994949
ORF1ab/nsp31587N1587NaaTaaC186186All0.000036
ORF1ab/nsp31587N1587SaAtaGt148148B.1.20.001303
ORF1ab/nsp31587N1587SaAtaGt124124B.350.96875
ORF1ab/nsp31587N1587KaaTaaG106122All0.00002
ORF1ab/nsp31587N1587KaaTaaA16122All0.000003
ORF1ab/nsp31587N1587DAatGat106106All0.00002
ORF1ab/nsp31587N1587SaAtaGt8181AY.40.000126
ORF1ab/nsp31587N1587SaAtaGt7575AY.430.000332
ORF1ab/nsp31587N1587KaaTaaG7575B.1.177.210.005735
ORF1ab/nsp31587N1587TaAtaCt5254All0.00001
ORF1ab/nsp31587N1587TaATaCA254All0
ORF1ab/nsp31587N1587SaAtaGt3636B.1.1.1410.072435
ORF1ab/nsp31587N1587delAAT---3535All0.000007
ORF1ab/nsp31587N1587SaAtaGt3131B.1.5250.003508
ORF1ab/nsp31587N1587TaAtaCt3030AY.440.000183
ORF1ab/nsp31587N1587SaAtaGt3030B.1.1.2220.00612
ORF1ab/nsp31587N1587SaAtaGt2929AY.30.000288
ORF1ab/nsp31587N1587NaaTaaC2828AY.40.000044
ORF1ab/nsp31587N1587SaAtaGt2525B.1.3510.000743
ORF1ab/nsp31587N1587SaAtaGt2424AY.1030.000149
ORF1ab/nsp31587N1587SaAtaGt2323AA.20.176923
ORF1ab/nsp31587N1587SaAtaGt2323B.1.617.20.000087
ORF1ab/nsp31587N1587NaaTaaC2222B.1.1.70.00002
ORF1ab/nsp31587N1587SaAtaGt2020B.10.000183
ORF1ab/nsp31587N1587DAatGat1919B.1.1.70.000017
ORF1ab/nsp31587N1587SaAtaGt1919P.10.000299
ORF1ab/nsp31587N1587SaAtaGt1818AY.440.00011
ORF1ab/nsp31587N1587SaAtaGt1616AY.250.000096
ORF1ab/nsp31587N1587SaAtaGt1616B.1.1770.000211
ORF1ab/nsp31587N1587SaAtaGt1414AY.600.013133
ORF1ab/nsp31587N1587delAAT---1313B.1.1.70.000012
ORF1ab/nsp31587N1587DAatGat1212AY.250.000072
ORF1ab/nsp31587N1587NaaTaaC1111AY.250.000066
ORF1ab/nsp31587N1587SaAtaGt1111B.1.4290.000259
ORF1ab/nsp31587N1587NaaTaaC1111B.1.617.20.000041
ORF1ab/nsp31587N1587KaaTaaA1010B.1.6370.000731
ORF1ab/nsp31587N1587IaAtaTt99All0.000002
ORF1ab/nsp31587N1587KaaTaaG99AY.1020.000239
ORF1ab/nsp31587N1587NaaTaaC99AY.440.000055
ORF1ab/nsp31587N1587SaAtaGt99B.1.5260.000212
ORF1ab/nsp31587N1587NaaTaaC88AY.1020.000212
ORF1ab/nsp31587N1587SaAtaGt88AY.4.20.000174
ORF1ab/nsp31587N1587SaAtaGt88B.1.10.000145
ORF1ab/nsp31587N1587SaAtaGt88B.1.6320.053691
ORF1ab/nsp31587N1587DAatGat77B.10.000064
ORF1ab/nsp31587N1587NaaTaaC77B.1.1.2140.000388
ORF1ab/nsp31587N1587KaaTaaG77B.1.1.70.000006
ORF1ab/nsp31587N1587DAatGat77B.1.177.440.003633
ORF1ab/nsp31587N1587SaAtaGt66AY.46.50.00119
ORF1ab/nsp31587N1587DAatGat66B.1.20.000053
ORF1ab/nsp31587N1587NaaTaaC66B.1.20.000053
ORF1ab/nsp31587N1587NaaTaaC55AY.1190.000177
ORF1ab/nsp31587N1587DAatGat55AY.40.000008
ORF1ab/nsp31587N1587SaAtaGt55AY.590.002648
ORF1ab/nsp31587N1587NaaTaaC55B.1.1.330.002104
ORF1ab/nsp31587N1587TaAtaCt55B.1.1600.000156
ORF1ab/nsp31587N1587SaAtaGt55B.1.2340.00066
ORF1ab/nsp31587N1587SaAtaGt55B.1.4270.000252
ORF1ab/nsp31587N1587SaAtaGt55P.1.140.000239
ORF1ab/nsp31587N1587YAatTat44All0.000001
ORF1ab/nsp31587N1587NaaTaaC44AY.1200.000149
ORF1ab/nsp31587N1587SaAtaGt44AY.200.000155
ORF1ab/nsp31587N1587SaAtaGt44AY.290.000063
ORF1ab/nsp31587N1587SaAtaGt44AY.300.001583
ORF1ab/nsp31587N1587SaAtaGt44AY.390.000099
ORF1ab/nsp31587N1587KaaTaaG44AY.40.000006
ORF1ab/nsp31587N1587NaaTaaC44B.10.000037
ORF1ab/nsp31587N1587NaaTaaC44B.1.10.000073
ORF1ab/nsp31587N1587NaaTaaC44B.1.1770.000053
ORF1ab/nsp31587N1587SaAtaGt44B.1.2430.000278
ORF1ab/nsp31587N1587SaAtaGt44B.1.2580.000266
ORF1ab/nsp31587N1587SaAtaGt44B.1.36.350.010417
ORF1ab/nsp31587N1587NaaTaaC44B.1.5260.000094
ORF1ab/nsp31587N1587TaAtaCt44B.1.617.20.000015
ORF1ab/nsp31587N1587HAatCat33All0.000001
ORF1ab/nsp31587N1587del1aaTaa-23All0
ORF1ab/nsp31587N1587del1Aat-at13All0
ORF1ab/nsp31587N1587NaaTaaC33AY.1030.000019
ORF1ab/nsp31587N1587SaAtaGt33AY.1130.000427
ORF1ab/nsp31587N1587NaaTaaC33AY.140.000264
ORF1ab/nsp31587N1587SaAtaGt33AY.3.10.000256
ORF1ab/nsp31587N1587SaAtaGt33AY.340.000291
ORF1ab/nsp31587N1587NaaTaaC33AY.4.50.000322
ORF1ab/nsp31587N1587DAatGat33AY.430.000013
ORF1ab/nsp31587N1587NaaTaaC33AY.450.000365
ORF1ab/nsp31587N1587TaAtaCt33AY.460.000312
ORF1ab/nsp31587N1587NaaTaaC33AY.50.000062
ORF1ab/nsp31587N1587SaAtaGt33AY.750.000168
ORF1ab/nsp31587N1587NaaTaaC33AY.9.20.00011
ORF1ab/nsp31587N1587SaAtaGt33AY.9.20.00011
ORF1ab/nsp31587N1587delAAT---33B.10.000027
ORF1ab/nsp31587N1587SaAtaGt33B.1.1.3540.013158
ORF1ab/nsp31587N1587SaAtaGt33B.1.2270.142857
ORF1ab/nsp31587N1587DAatGat33B.1.3510.000089
ORF1ab/nsp31587N1587NaaTaaC33B.1.466.20.001174
ORF1ab/nsp31587N1587SaAtaGt33B.1.4990.003151
ORF1ab/nsp31587N1587SaAtaGt33B.1.5750.00091
ORF1ab/nsp31587N1587DAatGat33B.1.617.20.000011
ORF1ab/nsp31587N1587delAAT---22A0.000774
ORF1ab/nsp31587N1587NaaTaaC22AE.80.000978
ORF1ab/nsp31587N1587TaAtaCt22AY.1020.000053
ORF1ab/nsp31587N1587SaAtaGt22AY.1020.000053
ORF1ab/nsp31587N1587DAatGat22AY.1030.000012
ORF1ab/nsp31587N1587DAatGat22AY.1100.000225
ORF1ab/nsp31587N1587SaAtaGt22AY.1170.000169
ORF1ab/nsp31587N1587DAatGat22AY.1190.000071
ORF1ab/nsp31587N1587SaAtaGt22AY.1190.000071
ORF1ab/nsp31587N1587delAAT---22AY.250.000012
ORF1ab/nsp31587N1587IaAtaTt22AY.250.000012
ORF1ab/nsp31587N1587DAatGat22AY.290.000032
ORF1ab/nsp31587N1587NaaTaaC22AY.30.00002
ORF1ab/nsp31587N1587KaaTaaG22AY.30.00002
ORF1ab/nsp31587N1587NaaTaaC22AY.330.000134
ORF1ab/nsp31587N1587NaaTaaC22AY.390.000049
ORF1ab/nsp31587N1587delAAT---22AY.40.000003
ORF1ab/nsp31587N1587SaAtaGt22AY.420.00008
ORF1ab/nsp31587N1587KaaTaaG22AY.440.000012
ORF1ab/nsp31587N1587SaAtaGt22AY.450.000243
ORF1ab/nsp31587N1587SaAtaGt22AY.5.30.000675
ORF1ab/nsp31587N1587SaAtaGt22AY.540.000191
ORF1ab/nsp31587N1587NaaTaaC22AY.540.000191
ORF1ab/nsp31587N1587KaaTaaA22B.1.10.000036
ORF1ab/nsp31587N1587DAatGat22B.1.10.000036
ORF1ab/nsp31587N1587SaAtaGt22B.1.1.1810.009091
ORF1ab/nsp31587N1587TaAtaCt22B.1.1.70.000002
ORF1ab/nsp31587N1587SaAtaGt22B.1.1600.000062
ORF1ab/nsp31587N1587KaaTaaA22B.1.1600.000062
ORF1ab/nsp31587N1587IaAtaTt22B.1.1770.000026
ORF1ab/nsp31587N1587DAatGat22B.1.1770.000026
ORF1ab/nsp31587N1587SaAtaGt22B.1.177.190.002861
ORF1ab/nsp31587N1587SaAtaGt22B.1.177.530.004785
ORF1ab/nsp31587N1587DAatGat22B.1.177.650.001331
ORF1ab/nsp31587N1587DAatGat22B.1.177.80.001505
ORF1ab/nsp31587N1587HAatCat22B.1.20.000018
ORF1ab/nsp31587N1587SaAtaGt22B.1.258.170.000208
ORF1ab/nsp31587N1587TaATaCA22B.1.5260.000047
ORF1ab/nsp31587N1587SaAtaGt22B.1.6090.000959
ORF1ab/nsp31587N1587DAatGat22B.1.617.10.000258
ORF1ab/nsp31587N1587SaAtaGt22B.1.6210.000177
ORF1ab/nsp31587N1587IaAtaTt22C.140.008658
ORF1ab/nsp31587N1587SaAtaGt22C.370.000232
ORF1ab/nsp31587N1587SaAtaGt11A0.000387
ORF1ab/nsp31587N1587del2AAt--t11All0
ORF1ab/nsp31587N1587CAAtTGt11All0
ORF1ab/nsp31587N1587DAatGat11AU.30.00211
ORF1ab/nsp31587N1587SaAtaGt11AU.30.00211
ORF1ab/nsp31587N1587TaAtaCt11AY.1000.000046
ORF1ab/nsp31587N1587SaAtaGt11AY.1000.000046
ORF1ab/nsp31587N1587TaAtaCt11AY.1030.000006
ORF1ab/nsp31587N1587DAatGat11AY.1130.000142
ORF1ab/nsp31587N1587DAatGat11AY.1210.000135
ORF1ab/nsp31587N1587KaaTaaG11AY.200.000039
ORF1ab/nsp31587N1587SaAtaGt11AY.230.00007
ORF1ab/nsp31587N1587delAAT---11AY.240.000431
ORF1ab/nsp31587N1587KaaTaaA11AY.250.000006
ORF1ab/nsp31587N1587DAatGat11AY.29.10.000221
ORF1ab/nsp31587N1587DAatGat11AY.30.00001
ORF1ab/nsp31587N1587SaAtaGt11AY.330.000067
ORF1ab/nsp31587N1587SaAtaGt11AY.34.10.00051
ORF1ab/nsp31587N1587TaAtaCt11AY.390.000025
ORF1ab/nsp31587N1587NaaTaaC11AY.4.2.10.000149
ORF1ab/nsp31587N1587DAatGat11AY.4.40.000409
ORF1ab/nsp31587N1587SaAtaGt11AY.4.50.000107
ORF1ab/nsp31587N1587delAAT---11AY.430.000004
ORF1ab/nsp31587N1587NaaTaaC11AY.430.000004
ORF1ab/nsp31587N1587SaAtaGt11AY.460.000104
ORF1ab/nsp31587N1587DAatGat11AY.470.000031
ORF1ab/nsp31587N1587NaaTaaC11AY.470.000031
ORF1ab/nsp31587N1587SaAtaGt11AY.50.000021
ORF1ab/nsp31587N1587SaAtaGt11AY.530.000288
ORF1ab/nsp31587N1587NaaTaaC11AY.610.000105
ORF1ab/nsp31587N1587NaaTaaC11AY.660.00107
ORF1ab/nsp31587N1587delAAT---11AY.660.00107
ORF1ab/nsp31587N1587NaaTaaC11AY.670.000464
ORF1ab/nsp31587N1587SaAtaGt11AY.680.000274
ORF1ab/nsp31587N1587DAatGat11AY.70.000196
ORF1ab/nsp31587N1587SaAtaGt11AY.7.10.000113
ORF1ab/nsp31587N1587CAAtTGt11AY.790.001211
ORF1ab/nsp31587N1587SaAtaGt11AY.840.000437
ORF1ab/nsp31587N1587NaaTaaC11AY.890.004902
ORF1ab/nsp31587N1587KaaTaaG11AY.9.20.000037
ORF1ab/nsp31587N1587NaaTaaC11AY.98.10.000048
ORF1ab/nsp31587N1587NaaTaaC11AY.990.001049
ORF1ab/nsp31587N1587SaAtaGt11AY.99.20.000092
ORF1ab/nsp31587N1587SaAtaGt11B0.000128
ORF1ab/nsp31587N1587KaaTaaA11B.10.000009
ORF1ab/nsp31587N1587delAAT---11B.1.10.000018
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.10.000327
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.10.000327
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.1350.004695
ORF1ab/nsp31587N1587KaaTaaG11B.1.1.2140.000055
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2140.000055
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.2220.000204
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2720.005208
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2800.003086
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.2940.001266
ORF1ab/nsp31587N1587del1aaTaa-11B.1.1.3060.000438
ORF1ab/nsp31587N1587DAatGat11B.1.1.3060.000438
ORF1ab/nsp31587N1587DAatGat11B.1.1.3110.000358
ORF1ab/nsp31587N1587delAAT---11B.1.1.3150.008475
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.3170.000412
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.370.000193
ORF1ab/nsp31587N1587DAatGat11B.1.1.3850.004464
ORF1ab/nsp31587N1587IaAtaTt11B.1.1.390.00051
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.400.034483
ORF1ab/nsp31587N1587YAatTat11B.1.1.4130.006897
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.4130.006897
ORF1ab/nsp31587N1587delAAT---11B.1.1.460.004367
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.500.000679
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.5190.00004
ORF1ab/nsp31587N1587NaaTaaC11B.1.1.5240.020833
ORF1ab/nsp31587N1587SaAtaGt11B.1.1.630.000386
ORF1ab/nsp31587N1587del1Aat-at11B.1.1.70.000001
ORF1ab/nsp31587N1587IaAtaTt11B.1.1.70.000001
ORF1ab/nsp31587N1587HAatCat11B.1.1.70.000001
ORF1ab/nsp31587N1587YAatTat11B.1.1600.000031
ORF1ab/nsp31587N1587NaaTaaC11B.1.160.160.000929
ORF1ab/nsp31587N1587YAatTat11B.1.160.300.002976
ORF1ab/nsp31587N1587DAatGat11B.1.160.320.004292
ORF1ab/nsp31587N1587NaaTaaC11B.1.1610.017241
ORF1ab/nsp31587N1587TaAtaCt11B.1.1770.000013
ORF1ab/nsp31587N1587delAAT---11B.1.1770.000013
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.160.000664
ORF1ab/nsp31587N1587DAatGat11B.1.177.190.001431
ORF1ab/nsp31587N1587delAAT---11B.1.177.210.000076
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.480.003125
ORF1ab/nsp31587N1587delAAT---11B.1.177.510.004566
ORF1ab/nsp31587N1587delAAT---11B.1.177.540.000606
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.650.000665
ORF1ab/nsp31587N1587SaAtaGt11B.1.177.690.001484
ORF1ab/nsp31587N1587NaaTaaC11B.1.177.810.000189
ORF1ab/nsp31587N1587IaAtaTt11B.1.20.000009
ORF1ab/nsp31587N1587del1aaTaa-11B.1.20.000009
ORF1ab/nsp31587N1587SaAtaGt11B.1.2180.005155
ORF1ab/nsp31587N1587SaAtaGt11B.1.220.001318
ORF1ab/nsp31587N1587NaaTaaC11B.1.2210.000071
ORF1ab/nsp31587N1587delAAT---11B.1.230.006061
ORF1ab/nsp31587N1587NaaTaaC11B.1.2340.000132
ORF1ab/nsp31587N1587YAatTat11B.1.2400.000216
ORF1ab/nsp31587N1587TaAtaCt11B.1.2580.000067
ORF1ab/nsp31587N1587delAAT---11B.1.2580.000067
ORF1ab/nsp31587N1587SaAtaGt11B.1.258.20.004505
ORF1ab/nsp31587N1587SaAtaGt11B.1.2640.012346
ORF1ab/nsp31587N1587SaAtaGt11B.1.2790.000514
ORF1ab/nsp31587N1587SaAtaGt11B.1.3060.005714
ORF1ab/nsp31587N1587KaaTaaG11B.1.3510.00003
ORF1ab/nsp31587N1587DAatGat11B.1.351.20.000303
ORF1ab/nsp31587N1587SaAtaGt11B.1.351.30.000876
ORF1ab/nsp31587N1587DAatGat11B.1.3610.001289
ORF1ab/nsp31587N1587SaAtaGt11B.1.3690.000285
ORF1ab/nsp31587N1587SaAtaGt11B.1.3750.00082
ORF1ab/nsp31587N1587SaAtaGt11B.1.3960.000706
ORF1ab/nsp31587N1587SaAtaGt11B.1.4000.000429
ORF1ab/nsp31587N1587KaaTaaG11B.1.4270.00005
ORF1ab/nsp31587N1587DAatGat11B.1.4290.000024
ORF1ab/nsp31587N1587SaAtaGt11B.1.4330.003195
ORF1ab/nsp31587N1587SaAtaGt11B.1.4380.006536
ORF1ab/nsp31587N1587TaAtaCt11B.1.466.20.000391
ORF1ab/nsp31587N1587KaaTaaG11B.1.466.20.000391
ORF1ab/nsp31587N1587SaAtaGt11B.1.5090.000866
ORF1ab/nsp31587N1587DAatGat11B.1.5410.004425
ORF1ab/nsp31587N1587SaAtaGt11B.1.5510.00129
ORF1ab/nsp31587N1587del2AAt--t11B.1.5610.000397
ORF1ab/nsp31587N1587SaAtaGt11B.1.5640.000426
ORF1ab/nsp31587N1587NaaTaaC11B.1.5750.000303
ORF1ab/nsp31587N1587DAatGat11B.1.5750.000303
ORF1ab/nsp31587N1587SaAtaGt11B.1.5820.000491
ORF1ab/nsp31587N1587NaaTaaC11B.1.5950.000261
ORF1ab/nsp31587N1587SaAtaGt11B.1.5960.000087
ORF1ab/nsp31587N1587SaAtaGt11B.1.617.10.000129
ORF1ab/nsp31587N1587KaaTaaG11B.1.617.20.000004
ORF1ab/nsp31587N1587delAAT---11B.1.6210.000089
ORF1ab/nsp31587N1587DAatGat11B.1.6210.000089
ORF1ab/nsp31587N1587SaAtaGt11B.1.6370.000073
ORF1ab/nsp31587N1587DAatGat11B.230.002924
ORF1ab/nsp31587N1587SaAtaGt11B.400.000364
ORF1ab/nsp31587N1587DAatGat11B.60.00091
ORF1ab/nsp31587N1587SaAtaGt11C.140.004329
ORF1ab/nsp31587N1587SaAtaGt11C.180.002591
ORF1ab/nsp31587N1587SaAtaGt11C.350.000774
ORF1ab/nsp31587N1587SaAtaGt11D.20.000075
ORF1ab/nsp31587N1587DAatGat11P.10.000016
ORF1ab/nsp31587N1587SaAtaGt11P.1.100.000269
ORF1ab/nsp31587N1587NaaTaaC11P.1.140.000048
ORF1ab/nsp31587N1587SaAtaGt11P.1.150.000232
ORF1ab/nsp31587N1587SaAtaGt11P.1.160.000374
ORF1ab/nsp31587N1587DAatGat11P.1.70.000319
ORF1ab/nsp31587N1587SaAtaGt11P.20.000187
ORF1ab/nsp31587N1587SaAtaGt11P.30.001595
ORF1ab/nsp31587N1587NaaTaaC11Q.20.000613
ORF1ab/nsp31587N1587NaaTaaC11R.10.00009