CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1580

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31580V1580VV2398VsyngtGgtT6924680.6763017457-7459
ORF1ab/nsp31580V1580VV2398VsyngtGgtA6922200.3179197457-7459
ORF1ab/nsp31580V1580VV2398VsyngtGgtC69240.005780357457-7459
ORF1ab/nsp31580V1580AV2398AnonsyngTggCg80780.9757457-7459
ORF1ab/nsp31580V1580AV2398AnonsyngTGgCA8020.0257457-7459
ORF1ab/nsp31580V1580MV2398MnonsynGtgAtg555517457-7459
ORF1ab/nsp31580V1580delV2398deldelGTG---414117457-7459
ORF1ab/nsp31580V1580LV2398LnonsynGtgTtg21190.9047627457-7459
ORF1ab/nsp31580V1580LV2398LnonsynGtGCtA2120.09523817457-7459
ORF1ab/nsp31580V1580EV2398EnonsyngTggAg7717457-7459
ORF1ab/nsp31580V1580GV2398GnonsyngTggGg4417457-7459
ORF1ab/nsp31580V1580HV2398HnonsynGTGCAC1117457-7459
ORF1ab/nsp31580V1580del1V2398del1delGtg-tg1117457-7459
ORF1ab/nsp31580V1580NV2398NnonsynGTGAAT1117457-7459
ORF1ab/nsp31580V1580RV2398RnonsynGTgAGg1117457-7459
ORF1ab/nsp31580V1580IV2398InonsynGtGAtA1117457-7459

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31580V1580VgtGgtT468692All0.00009
ORF1ab/nsp31580V1580VgtGgtA220692All0.000042
ORF1ab/nsp31580V1580VgtGgtC4692All0.000001
ORF1ab/nsp31580V1580VgtGgtA137151B.1.1.70.000123
ORF1ab/nsp31580V1580VgtGgtT13151B.1.1.70.000012
ORF1ab/nsp31580V1580VgtGgtC1151B.1.1.70.000001
ORF1ab/nsp31580V1580VgtGgtT135135B.1.9.40.828221
ORF1ab/nsp31580V1580VgtGgtT111118B.10.001017
ORF1ab/nsp31580V1580VgtGgtA5118B.10.000046
ORF1ab/nsp31580V1580VgtGgtC2118B.10.000018
ORF1ab/nsp31580V1580AgTggCg7880All0.000015
ORF1ab/nsp31580V1580AgTGgCA280All0
ORF1ab/nsp31580V1580MGtgAtg5555All0.000011
ORF1ab/nsp31580V1580VgtGgtT4242AY.4.20.000911
ORF1ab/nsp31580V1580delGTG---4141All0.000008
ORF1ab/nsp31580V1580VgtGgtT2932AY.40.000045
ORF1ab/nsp31580V1580VgtGgtA332AY.40.000005
ORF1ab/nsp31580V1580VgtGgtT2728B.1.20.000238
ORF1ab/nsp31580V1580VgtGgtA128B.1.20.000009
ORF1ab/nsp31580V1580AgTggCg2424B.1.617.20.00009
ORF1ab/nsp31580V1580AgTggCg2323AY.390.000568
ORF1ab/nsp31580V1580LGtgTtg1921All0.000004
ORF1ab/nsp31580V1580LGtGCtA221All0
ORF1ab/nsp31580V1580MGtgAtg1515AY.1000.00069
ORF1ab/nsp31580V1580AgTggCg1414AY.230.000976
ORF1ab/nsp31580V1580VgtGgtT1414AY.39.10.000555
ORF1ab/nsp31580V1580delGTG---1414B.1.1.70.000013
ORF1ab/nsp31580V1580VgtGgtT713AY.250.000042
ORF1ab/nsp31580V1580VgtGgtA613AY.250.000036
ORF1ab/nsp31580V1580MGtgAtg1313B.1.617.20.000049
ORF1ab/nsp31580V1580VgtGgtA1111AY.46.40.00181
ORF1ab/nsp31580V1580VgtGgtT89B.1.617.20.00003
ORF1ab/nsp31580V1580VgtGgtA19B.1.617.20.000004
ORF1ab/nsp31580V1580VgtGgtT88AY.430.000035
ORF1ab/nsp31580V1580VgtGgtT88P.20.001493
ORF1ab/nsp31580V1580EgTggAg77All0.000001
ORF1ab/nsp31580V1580VgtGgtT77B.1.90.04321
ORF1ab/nsp31580V1580VgtGgtT46B0.000511
ORF1ab/nsp31580V1580VgtGgtA26B0.000256
ORF1ab/nsp31580V1580VgtGgtT66B.1.1260.007653
ORF1ab/nsp31580V1580VgtGgtA56P.10.000079
ORF1ab/nsp31580V1580VgtGgtT16P.10.000016
ORF1ab/nsp31580V1580VgtGgtA55AY.230.000349
ORF1ab/nsp31580V1580VgtGgtA35B.1.10.000054
ORF1ab/nsp31580V1580VgtGgtT25B.1.10.000036
ORF1ab/nsp31580V1580VgtGgtA55Q.80.000825
ORF1ab/nsp31580V1580GgTggGg44All0.000001
ORF1ab/nsp31580V1580VgtGgtT34AY.440.000018
ORF1ab/nsp31580V1580VgtGgtA14AY.440.000006
ORF1ab/nsp31580V1580VgtGgtA44AY.470.000124
ORF1ab/nsp31580V1580delGTG---44B.10.000037
ORF1ab/nsp31580V1580LGtgTtg44B.1.1.70.000004
ORF1ab/nsp31580V1580VgtGgtT44B.1.4250.011976
ORF1ab/nsp31580V1580VgtGgtA44B.1.4290.000094
ORF1ab/nsp31580V1580VgtGgtT44B.1.6210.000354
ORF1ab/nsp31580V1580AgTggCg33AY.1190.000106
ORF1ab/nsp31580V1580delGTG---33AY.40.000005
ORF1ab/nsp31580V1580MGtgAtg33AY.430.000013
ORF1ab/nsp31580V1580AgTggCg23AY.430.000009
ORF1ab/nsp31580V1580AgTGgCA13AY.430.000004
ORF1ab/nsp31580V1580VgtGgtA33AY.450.000365
ORF1ab/nsp31580V1580VgtGgtA33B.1.1.250.001706
ORF1ab/nsp31580V1580MGtgAtg33B.1.1.70.000003
ORF1ab/nsp31580V1580VgtGgtA33B.1.3510.000089
ORF1ab/nsp31580V1580VgtGgtT33B.1.9.50.017045
ORF1ab/nsp31580V1580VgtGgtA12AY.1000.000046
ORF1ab/nsp31580V1580VgtGgtT12AY.1000.000046
ORF1ab/nsp31580V1580delGTG---22AY.250.000012
ORF1ab/nsp31580V1580VgtGgtT22AY.290.000032
ORF1ab/nsp31580V1580AgTggCg22AY.30.00002
ORF1ab/nsp31580V1580GgTggGg22AY.30.00002
ORF1ab/nsp31580V1580MGtgAtg22AY.40.000003
ORF1ab/nsp31580V1580EgTggAg22AY.920.000575
ORF1ab/nsp31580V1580MGtgAtg22AY.980.000158
ORF1ab/nsp31580V1580MGtgAtg22B.10.000018
ORF1ab/nsp31580V1580LGtgTtg22B.10.000018
ORF1ab/nsp31580V1580VgtGgtT22B.1.1.2840.000215
ORF1ab/nsp31580V1580VgtGgtA12B.1.1770.000013
ORF1ab/nsp31580V1580VgtGgtT12B.1.1770.000013
ORF1ab/nsp31580V1580VgtGgtT22B.1.177.860.000367
ORF1ab/nsp31580V1580AgTggCg22B.1.20.000018
ORF1ab/nsp31580V1580VgtGgtT12B.1.2210.000071
ORF1ab/nsp31580V1580VgtGgtA12B.1.2210.000071
ORF1ab/nsp31580V1580VgtGgtT22B.1.2340.000264
ORF1ab/nsp31580V1580VgtGgtA22B.1.351.30.001753
ORF1ab/nsp31580V1580VgtGgtA22B.1.5750.000607
ORF1ab/nsp31580V1580LGtgTtg22B.1.617.20.000008
ORF1ab/nsp31580V1580VgtGgtT12C.370.000116
ORF1ab/nsp31580V1580VgtGgtC12C.370.000116
ORF1ab/nsp31580V1580MGtgAtg110.055556
ORF1ab/nsp31580V1580delGTG---11A0.000387
ORF1ab/nsp31580V1580HGTGCAC11A.10.000282
ORF1ab/nsp31580V1580IGtGAtA11All0
ORF1ab/nsp31580V1580NGTGAAT11All0
ORF1ab/nsp31580V1580HGTGCAC11All0
ORF1ab/nsp31580V1580del1Gtg-tg11All0
ORF1ab/nsp31580V1580RGTgAGg11All0
ORF1ab/nsp31580V1580LGtgTtg11AP.10.001502
ORF1ab/nsp31580V1580MGtgAtg11AY.10.000396
ORF1ab/nsp31580V1580VgtGgtA11AY.1030.000006
ORF1ab/nsp31580V1580LGtgTtg11AY.1030.000006
ORF1ab/nsp31580V1580VgtGgtA11AY.1090.00074
ORF1ab/nsp31580V1580VgtGgtT11AY.1200.000037
ORF1ab/nsp31580V1580LGtgTtg11AY.1210.000135
ORF1ab/nsp31580V1580MGtgAtg11AY.16.10.00047
ORF1ab/nsp31580V1580VgtGgtT11AY.16.10.00047
ORF1ab/nsp31580V1580MGtgAtg11AY.230.00007
ORF1ab/nsp31580V1580VgtGgtT11AY.23.10.000417
ORF1ab/nsp31580V1580delGTG---11AY.240.000431
ORF1ab/nsp31580V1580GgTggGg11AY.250.000006
ORF1ab/nsp31580V1580MGtgAtg11AY.250.000006
ORF1ab/nsp31580V1580VgtGgtT11AY.260.000028
ORF1ab/nsp31580V1580LGtgTtg11AY.260.000028
ORF1ab/nsp31580V1580MGtgAtg11AY.270.000065
ORF1ab/nsp31580V1580VgtGgtA11AY.30.00001
ORF1ab/nsp31580V1580EgTggAg11AY.3.10.000085
ORF1ab/nsp31580V1580VgtGgtT11AY.330.000067
ORF1ab/nsp31580V1580VgtGgtA11AY.350.000233
ORF1ab/nsp31580V1580EgTggAg11AY.40.000002
ORF1ab/nsp31580V1580AgTggCg11AY.40.000002
ORF1ab/nsp31580V1580LGtgTtg11AY.40.000002
ORF1ab/nsp31580V1580AgTggCg11AY.4.20.000022
ORF1ab/nsp31580V1580VgtGgtT11AY.4.2.10.000149
ORF1ab/nsp31580V1580MGtgAtg11AY.400.000964
ORF1ab/nsp31580V1580delGTG---11AY.430.000004
ORF1ab/nsp31580V1580RGTgAGg11AY.440.000006
ORF1ab/nsp31580V1580AgTggCg11AY.440.000006
ORF1ab/nsp31580V1580LGtgTtg11AY.460.000104
ORF1ab/nsp31580V1580VgtGgtT11AY.50.000021
ORF1ab/nsp31580V1580delGTG---11AY.660.00107
ORF1ab/nsp31580V1580AgTggCg11AY.670.000464
ORF1ab/nsp31580V1580EgTggAg11AY.840.000437
ORF1ab/nsp31580V1580VgtGgtT11AY.90.000068
ORF1ab/nsp31580V1580AgTggCg11AY.900.000684
ORF1ab/nsp31580V1580VgtGgtT11AY.980.000079
ORF1ab/nsp31580V1580delGTG---11AY.99.10.001553
ORF1ab/nsp31580V1580MGtgAtg11AY.99.20.000092
ORF1ab/nsp31580V1580IGtGAtA11B.10.000009
ORF1ab/nsp31580V1580AgTggCg11B.10.000009
ORF1ab/nsp31580V1580delGTG---11B.1.10.000018
ORF1ab/nsp31580V1580VgtGgtT11B.1.1.10.000327
ORF1ab/nsp31580V1580VgtGgtT11B.1.1.1890.001513
ORF1ab/nsp31580V1580VgtGgtT11B.1.1.2740.005051
ORF1ab/nsp31580V1580delGTG---11B.1.1.3110.000358
ORF1ab/nsp31580V1580delGTG---11B.1.1.3150.008475
ORF1ab/nsp31580V1580LGtgTtg11B.1.1.3180.000302
ORF1ab/nsp31580V1580VgtGgtT11B.1.1.4340.000349
ORF1ab/nsp31580V1580delGTG---11B.1.1.460.004367
ORF1ab/nsp31580V1580VgtGgtT11B.1.1.5190.00004
ORF1ab/nsp31580V1580LGtgTtg11B.1.1.5190.00004
ORF1ab/nsp31580V1580AgTggCg11B.1.1.70.000001
ORF1ab/nsp31580V1580EgTggAg11B.1.1.70.000001
ORF1ab/nsp31580V1580VgtGgtA11B.1.1600.000031
ORF1ab/nsp31580V1580LGtgTtg11B.1.160.140.002119
ORF1ab/nsp31580V1580delGTG---11B.1.1610.017241
ORF1ab/nsp31580V1580LGtgTtg11B.1.1770.000013
ORF1ab/nsp31580V1580AgTggCg11B.1.1770.000013
ORF1ab/nsp31580V1580delGTG---11B.1.1770.000013
ORF1ab/nsp31580V1580del1Gtg-tg11B.1.1770.000013
ORF1ab/nsp31580V1580MGtgAtg11B.1.1770.000013
ORF1ab/nsp31580V1580delGTG---11B.1.177.210.000076
ORF1ab/nsp31580V1580delGTG---11B.1.177.510.004566
ORF1ab/nsp31580V1580VgtGgtT11B.1.177.730.000566
ORF1ab/nsp31580V1580delGTG---11B.1.20.000009
ORF1ab/nsp31580V1580MGtgAtg11B.1.20.000009
ORF1ab/nsp31580V1580MGtgAtg11B.1.2210.000071
ORF1ab/nsp31580V1580delGTG---11B.1.230.006061
ORF1ab/nsp31580V1580VgtGgtT11B.1.2320.000537
ORF1ab/nsp31580V1580delGTG---11B.1.2580.000067
ORF1ab/nsp31580V1580VgtGgtT11B.1.2580.000067
ORF1ab/nsp31580V1580VgtGgtT11B.1.3240.001605
ORF1ab/nsp31580V1580MGtgAtg11B.1.3510.00003
ORF1ab/nsp31580V1580VgtGgtA11B.1.360.000146
ORF1ab/nsp31580V1580LGtGCtA11B.1.360.000146
ORF1ab/nsp31580V1580VgtGgtA11B.1.36.100.004785
ORF1ab/nsp31580V1580LGtGCtA11B.1.36.290.000517
ORF1ab/nsp31580V1580VgtGgtA11B.1.3610.001289
ORF1ab/nsp31580V1580LGtgTtg11B.1.3690.000285
ORF1ab/nsp31580V1580MGtgAtg11B.1.4160.001269
ORF1ab/nsp31580V1580MGtgAtg11B.1.438.10.000107
ORF1ab/nsp31580V1580VgtGgtA11B.1.4660.023256
ORF1ab/nsp31580V1580VgtGgtT11B.1.4990.00105
ORF1ab/nsp31580V1580VgtGgtA11B.1.5260.000024
ORF1ab/nsp31580V1580delGTG---11B.1.5610.000397
ORF1ab/nsp31580V1580MGtgAtg11B.1.6090.000479
ORF1ab/nsp31580V1580GgTggGg11B.1.617.20.000004
ORF1ab/nsp31580V1580NGTGAAT11B.1.617.20.000004
ORF1ab/nsp31580V1580VgtGgtA11B.1.6200.000946
ORF1ab/nsp31580V1580delGTG---11B.1.6210.000089
ORF1ab/nsp31580V1580VgtGgtT11B.1.6270.00202
ORF1ab/nsp31580V1580EgTggAg11B.1.6370.000073
ORF1ab/nsp31580V1580AgTGgCA11C.350.000774