CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1578

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31578S1578IS2396InonsynaGtaTt4514451417451-7453
ORF1ab/nsp31578S1578SS2396SsynagTagC80180117451-7453
ORF1ab/nsp31578S1578GS2396GnonsynAgtGgt6106090.9983617451-7453
ORF1ab/nsp31578S1578GS2396GnonsynAgTGgG61010.001639347451-7453
ORF1ab/nsp31578S1578NS2396NnonsynaGtaAt797917451-7453
ORF1ab/nsp31578S1578delS2396deldelAGT---474717451-7453
ORF1ab/nsp31578S1578CS2396CnonsynAgtTgt171717451-7453
ORF1ab/nsp31578S1578TS2396TnonsynaGtaCt9917451-7453
ORF1ab/nsp31578S1578RS2396RnonsynagTagG2217451-7453
ORF1ab/nsp31578S1578KS2396KnonsynaGTaAA210.57451-7453
ORF1ab/nsp31578S1578KS2396KnonsynaGTaAG210.57451-7453
ORF1ab/nsp31578S1578FS2396FnonsynAGTTTC1117451-7453
ORF1ab/nsp31578S1578del1S2396del1delagTag-1117451-7453
ORF1ab/nsp31578S1578AS2396AnonsynAGtGCt1117451-7453

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31578S1578IaGtaTt45144514All0.000863
ORF1ab/nsp31578S1578IaGtaTt16531653B.1.1.3170.680527
ORF1ab/nsp31578S1578IaGtaTt14341434AY.30.014263
ORF1ab/nsp31578S1578SagTagC801801All0.000153
ORF1ab/nsp31578S1578SagTagC733733AY.440.004462
ORF1ab/nsp31578S1578GAgtGgt609610All0.000116
ORF1ab/nsp31578S1578GAgTGgG1610All0
ORF1ab/nsp31578S1578IaGtaTt285285B.1.617.20.001073
ORF1ab/nsp31578S1578IaGtaTt122122AY.1050.078457
ORF1ab/nsp31578S1578IaGtaTt118118AY.420.004747
ORF1ab/nsp31578S1578IaGtaTt106106B.1.1.70.000095
ORF1ab/nsp31578S1578IaGtaTt101101AY.1020.002678
ORF1ab/nsp31578S1578GAgtGgt9999B.1.1.70.000089
ORF1ab/nsp31578S1578GAgtGgt9797AY.440.00059
ORF1ab/nsp31578S1578NaGtaAt7979All0.000015
ORF1ab/nsp31578S1578IaGtaTt7979AY.250.000475
ORF1ab/nsp31578S1578IaGtaTt6464AS.21
ORF1ab/nsp31578S1578IaGtaTt5454AY.1160.015486
ORF1ab/nsp31578S1578GAgtGgt5151AY.40.000079
ORF1ab/nsp31578S1578IaGtaTt5151AY.40.000079
ORF1ab/nsp31578S1578SagTagC5050B.1.617.20.000188
ORF1ab/nsp31578S1578IaGtaTt4848B.1.10.000871
ORF1ab/nsp31578S1578delAGT---4747All0.000009
ORF1ab/nsp31578S1578IaGtaTt4646B.10.000421
ORF1ab/nsp31578S1578IaGtaTt2929AY.390.000717
ORF1ab/nsp31578S1578IaGtaTt2727B.1.5950.007046
ORF1ab/nsp31578S1578GAgtGgt2626P.10.00041
ORF1ab/nsp31578S1578GAgtGgt2323B.1.6200.02176
ORF1ab/nsp31578S1578GAgtGgt2222B.1.20.000194
ORF1ab/nsp31578S1578GAgtGgt2121B.1.617.20.000079
ORF1ab/nsp31578S1578IaGtaTt2020AY.430.000089
ORF1ab/nsp31578S1578IaGtaTt1919AY.680.005201
ORF1ab/nsp31578S1578IaGtaTt1919AY.850.008116
ORF1ab/nsp31578S1578IaGtaTt1818B.1.1.1890.027231
ORF1ab/nsp31578S1578GAgtGgt1718B.1.1770.000224
ORF1ab/nsp31578S1578GAgTGgG118B.1.1770.000013
ORF1ab/nsp31578S1578GAgtGgt1818B.1.3510.000535
ORF1ab/nsp31578S1578CAgtTgt1717All0.000003
ORF1ab/nsp31578S1578IaGtaTt1717AY.440.000103
ORF1ab/nsp31578S1578delAGT---1717B.1.1.70.000015
ORF1ab/nsp31578S1578IaGtaTt1717B.1.6330.708333
ORF1ab/nsp31578S1578GAgtGgt1616AY.9.20.000588
ORF1ab/nsp31578S1578IaGtaTt1515P.10.000236
ORF1ab/nsp31578S1578NaGtaAt1414AY.440.000085
ORF1ab/nsp31578S1578IaGtaTt1313AY.1030.000081
ORF1ab/nsp31578S1578IaGtaTt1313AY.1170.001099
ORF1ab/nsp31578S1578GAgtGgt1313B.10.000119
ORF1ab/nsp31578S1578NaGtaAt1212AY.290.000189
ORF1ab/nsp31578S1578GAgtGgt1111AY.250.000066
ORF1ab/nsp31578S1578GAgtGgt1111B.1.1600.000343
ORF1ab/nsp31578S1578NaGtaAt1010AY.40.000016
ORF1ab/nsp31578S1578NaGtaAt1010AY.470.000311
ORF1ab/nsp31578S1578TaGtaCt99All0.000002
ORF1ab/nsp31578S1578IaGtaTt99AY.46.20.005718
ORF1ab/nsp31578S1578IaGtaTt99AY.910.006574
ORF1ab/nsp31578S1578IaGtaTt99B.1.20.000079
ORF1ab/nsp31578S1578GAgtGgt88AY.330.000534
ORF1ab/nsp31578S1578IaGtaTt88AY.630.003095
ORF1ab/nsp31578S1578GAgtGgt88B.1.351.20.002421
ORF1ab/nsp31578S1578GAgtGgt77AY.1020.000186
ORF1ab/nsp31578S1578TaGtaCt77AY.30.00007
ORF1ab/nsp31578S1578IaGtaTt77AY.460.000729
ORF1ab/nsp31578S1578GAgtGgt77AY.50.000145
ORF1ab/nsp31578S1578GAgtGgt77B.1.10.000127
ORF1ab/nsp31578S1578GAgtGgt77P.1.120.003388
ORF1ab/nsp31578S1578GAgtGgt66AY.350.001398
ORF1ab/nsp31578S1578IaGtaTt66B.1.1390.004399
ORF1ab/nsp31578S1578NaGtaAt66B.1.4290.000141
ORF1ab/nsp31578S1578GAgtGgt66B.1.6280.002114
ORF1ab/nsp31578S1578NaGtaAt66P.10.000095
ORF1ab/nsp31578S1578IaGtaTt55AY.1200.000186
ORF1ab/nsp31578S1578CAgtTgt55AY.200.000194
ORF1ab/nsp31578S1578IaGtaTt55AY.5.30.001687
ORF1ab/nsp31578S1578IaGtaTt55B.1.1.2770.003794
ORF1ab/nsp31578S1578GAgtGgt55B.1.1.280.001556
ORF1ab/nsp31578S1578GAgtGgt55B.1.177.210.000382
ORF1ab/nsp31578S1578NaGtaAt55B.1.2430.000348
ORF1ab/nsp31578S1578GAgtGgt55B.1.2580.000333
ORF1ab/nsp31578S1578GAgtGgt55P.1.160.001871
ORF1ab/nsp31578S1578GAgtGgt44AY.1030.000025
ORF1ab/nsp31578S1578IaGtaTt44AY.260.000113
ORF1ab/nsp31578S1578delAGT---44AY.40.000006
ORF1ab/nsp31578S1578GAgtGgt44AY.430.000018
ORF1ab/nsp31578S1578GAgtGgt44AY.470.000124
ORF1ab/nsp31578S1578delAGT---44B.10.000037
ORF1ab/nsp31578S1578IaGtaTt44B.1.1.2530.010025
ORF1ab/nsp31578S1578IaGtaTt44B.1.1.260.020942
ORF1ab/nsp31578S1578CAgtTgt44B.1.1.70.000004
ORF1ab/nsp31578S1578NaGtaAt44B.1.1.70.000004
ORF1ab/nsp31578S1578GAgtGgt44B.1.160.160.003717
ORF1ab/nsp31578S1578GAgtGgt44P.1.100.001078
ORF1ab/nsp31578S1578CAgtTgt33AY.1020.00008
ORF1ab/nsp31578S1578GAgtGgt33AY.1070.001398
ORF1ab/nsp31578S1578GAgtGgt33AY.1110.000549
ORF1ab/nsp31578S1578GAgtGgt33AY.260.000085
ORF1ab/nsp31578S1578IaGtaTt33AY.450.000365
ORF1ab/nsp31578S1578IaGtaTt33AY.750.000168
ORF1ab/nsp31578S1578IaGtaTt33AY.75.10.000541
ORF1ab/nsp31578S1578GAgtGgt33B.1.1.2840.000322
ORF1ab/nsp31578S1578GAgtGgt33B.1.1.5190.000119
ORF1ab/nsp31578S1578IaGtaTt33B.1.1100.013575
ORF1ab/nsp31578S1578SagTagC33B.1.177.860.00055
ORF1ab/nsp31578S1578NaGtaAt33B.1.2060.002447
ORF1ab/nsp31578S1578IaGtaTt33B.1.3460.003932
ORF1ab/nsp31578S1578GAgtGgt33B.1.36.350.007812
ORF1ab/nsp31578S1578IaGtaTt33B.1.4000.001287
ORF1ab/nsp31578S1578CAgtTgt33B.1.617.20.000011
ORF1ab/nsp31578S1578IaGtaTt33P.1.140.000143
ORF1ab/nsp31578S1578GAgtGgt220.111111
ORF1ab/nsp31578S1578RagTagG22All0
ORF1ab/nsp31578S1578KaGTaAG12All0
ORF1ab/nsp31578S1578KaGTaAA12All0
ORF1ab/nsp31578S1578GAgtGgt22AY.1170.000169
ORF1ab/nsp31578S1578IaGtaTt22AY.1180.000125
ORF1ab/nsp31578S1578GAgtGgt22AY.140.000176
ORF1ab/nsp31578S1578IaGtaTt22AY.230.000139
ORF1ab/nsp31578S1578delAGT---22AY.250.000012
ORF1ab/nsp31578S1578GAgtGgt22AY.30.00002
ORF1ab/nsp31578S1578IaGtaTt22AY.360.000296
ORF1ab/nsp31578S1578IaGtaTt22AY.370.000632
ORF1ab/nsp31578S1578GAgtGgt22AY.4.20.000043
ORF1ab/nsp31578S1578GAgtGgt22AY.46.60.000144
ORF1ab/nsp31578S1578IaGtaTt22AY.50.000041
ORF1ab/nsp31578S1578IaGtaTt22AY.9.10.000167
ORF1ab/nsp31578S1578IaGtaTt22AY.920.000575
ORF1ab/nsp31578S1578IaGtaTt22B.1.1.330.000842
ORF1ab/nsp31578S1578IaGtaTt22B.1.1.3700.025316
ORF1ab/nsp31578S1578IaGtaTt22B.1.1.5210.010695
ORF1ab/nsp31578S1578GAgtGgt22B.1.1.630.000772
ORF1ab/nsp31578S1578SagTagC22B.1.1.70.000002
ORF1ab/nsp31578S1578GAgtGgt22B.1.1.700.000682
ORF1ab/nsp31578S1578delAGT---22B.1.1770.000026
ORF1ab/nsp31578S1578GAgtGgt22B.1.177.670.015267
ORF1ab/nsp31578S1578GAgtGgt22B.1.2210.000142
ORF1ab/nsp31578S1578IaGtaTt22B.1.4270.000101
ORF1ab/nsp31578S1578GAgtGgt22B.1.5610.000794
ORF1ab/nsp31578S1578delAGT---11A0.000387
ORF1ab/nsp31578S1578FAGTTTC11A.10.000282
ORF1ab/nsp31578S1578IaGtaTt11A.2.50.000499
ORF1ab/nsp31578S1578GAgtGgt11AD.20.000219
ORF1ab/nsp31578S1578AAGtGCt11All0
ORF1ab/nsp31578S1578FAGTTTC11All0
ORF1ab/nsp31578S1578del1agTag-11All0
ORF1ab/nsp31578S1578NaGtaAt11AV.10.005051
ORF1ab/nsp31578S1578GAgtGgt11AY.1000.000046
ORF1ab/nsp31578S1578SagTagC11AY.1020.000027
ORF1ab/nsp31578S1578SagTagC11AY.1030.000006
ORF1ab/nsp31578S1578IaGtaTt11AY.1060.000335
ORF1ab/nsp31578S1578SagTagC11AY.1170.000085
ORF1ab/nsp31578S1578GAgtGgt11AY.1180.000063
ORF1ab/nsp31578S1578GAgtGgt11AY.1190.000035
ORF1ab/nsp31578S1578IaGtaTt11AY.1190.000035
ORF1ab/nsp31578S1578GAgtGgt11AY.1200.000037
ORF1ab/nsp31578S1578GAgtGgt11AY.1210.000135
ORF1ab/nsp31578S1578GAgtGgt11AY.130.000161
ORF1ab/nsp31578S1578IaGtaTt11AY.200.000039
ORF1ab/nsp31578S1578GAgtGgt11AY.200.000039
ORF1ab/nsp31578S1578SagTagC11AY.200.000039
ORF1ab/nsp31578S1578delAGT---11AY.240.000431
ORF1ab/nsp31578S1578NaGtaAt11AY.250.000006
ORF1ab/nsp31578S1578NaGtaAt11AY.270.000065
ORF1ab/nsp31578S1578IaGtaTt11AY.270.000065
ORF1ab/nsp31578S1578IaGtaTt11AY.290.000016
ORF1ab/nsp31578S1578GAgtGgt11AY.300.000396
ORF1ab/nsp31578S1578SagTagC11AY.330.000067
ORF1ab/nsp31578S1578CAgtTgt11AY.390.000025
ORF1ab/nsp31578S1578GAgtGgt11AY.390.000025
ORF1ab/nsp31578S1578NaGtaAt11AY.39.10.00004
ORF1ab/nsp31578S1578SagTagC11AY.40.000002
ORF1ab/nsp31578S1578GAgtGgt11AY.4.2.10.000149
ORF1ab/nsp31578S1578GAgtGgt11AY.4.50.000107
ORF1ab/nsp31578S1578delAGT---11AY.4.50.000107
ORF1ab/nsp31578S1578delAGT---11AY.430.000004
ORF1ab/nsp31578S1578KaGTaAG11AY.440.000006
ORF1ab/nsp31578S1578GAgtGgt11AY.460.000104
ORF1ab/nsp31578S1578GAgtGgt11AY.46.10.001027
ORF1ab/nsp31578S1578IaGtaTt11AY.470.000031
ORF1ab/nsp31578S1578GAgtGgt11AY.540.000095
ORF1ab/nsp31578S1578GAgtGgt11AY.590.00053
ORF1ab/nsp31578S1578IaGtaTt11AY.60.000041
ORF1ab/nsp31578S1578NaGtaAt11AY.650.000533
ORF1ab/nsp31578S1578delAGT---11AY.660.00107
ORF1ab/nsp31578S1578GAgtGgt11AY.680.000274
ORF1ab/nsp31578S1578GAgtGgt11AY.750.000056
ORF1ab/nsp31578S1578IaGtaTt11AY.840.000437
ORF1ab/nsp31578S1578IaGtaTt11AY.880.000884
ORF1ab/nsp31578S1578GAgtGgt11AY.890.004902
ORF1ab/nsp31578S1578GAgtGgt11AY.930.000273
ORF1ab/nsp31578S1578IaGtaTt11AY.940.000443
ORF1ab/nsp31578S1578IaGtaTt11AY.950.000761
ORF1ab/nsp31578S1578delAGT---11AY.99.10.001553
ORF1ab/nsp31578S1578IaGtaTt11B0.000128
ORF1ab/nsp31578S1578GAgtGgt11B0.000128
ORF1ab/nsp31578S1578NaGtaAt11B.10.000009
ORF1ab/nsp31578S1578SagTagC11B.10.000009
ORF1ab/nsp31578S1578SagTagC11B.1.10.000018
ORF1ab/nsp31578S1578delAGT---11B.1.10.000018
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.10.000327
ORF1ab/nsp31578S1578IaGtaTt11B.1.1.100.001115
ORF1ab/nsp31578S1578IaGtaTt11B.1.1.1980.001468
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.2160.00089
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.2220.000204
ORF1ab/nsp31578S1578IaGtaTt11B.1.1.2220.000204
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.2690.001353
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.2880.001916
ORF1ab/nsp31578S1578SagTagC11B.1.1.2940.001266
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.3060.000438
ORF1ab/nsp31578S1578delAGT---11B.1.1.3110.000358
ORF1ab/nsp31578S1578delAGT---11B.1.1.3150.008475
ORF1ab/nsp31578S1578IaGtaTt11B.1.1.3360.016667
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.3680.003086
ORF1ab/nsp31578S1578IaGtaTt11B.1.1.3690.000446
ORF1ab/nsp31578S1578IaGtaTt11B.1.1.3890.006061
ORF1ab/nsp31578S1578delAGT---11B.1.1.460.004367
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.500.000679
ORF1ab/nsp31578S1578TaGtaCt11B.1.1.70.000001
ORF1ab/nsp31578S1578GAgtGgt11B.1.1.890.006061
ORF1ab/nsp31578S1578IaGtaTt11B.1.1600.000031
ORF1ab/nsp31578S1578NaGtaAt11B.1.1600.000031
ORF1ab/nsp31578S1578delAGT---11B.1.1610.017241
ORF1ab/nsp31578S1578RagTagG11B.1.1770.000013
ORF1ab/nsp31578S1578GAgtGgt11B.1.177.100.000878
ORF1ab/nsp31578S1578delAGT---11B.1.177.210.000076
ORF1ab/nsp31578S1578TaGtaCt11B.1.177.440.000519
ORF1ab/nsp31578S1578GAgtGgt11B.1.177.460.000918
ORF1ab/nsp31578S1578GAgtGgt11B.1.177.470.012987
ORF1ab/nsp31578S1578delAGT---11B.1.177.510.004566
ORF1ab/nsp31578S1578IaGtaTt11B.1.177.770.000726
ORF1ab/nsp31578S1578delAGT---11B.1.20.000009
ORF1ab/nsp31578S1578RagTagG11B.1.20.000009
ORF1ab/nsp31578S1578delAGT---11B.1.230.006061
ORF1ab/nsp31578S1578IaGtaTt11B.1.2340.000132
ORF1ab/nsp31578S1578delAGT---11B.1.2580.000067
ORF1ab/nsp31578S1578GAgtGgt11B.1.258.170.000104
ORF1ab/nsp31578S1578CAgtTgt11B.1.258.170.000104
ORF1ab/nsp31578S1578IaGtaTt11B.1.3510.00003
ORF1ab/nsp31578S1578GAgtGgt11B.1.3560.001727
ORF1ab/nsp31578S1578GAgtGgt11B.1.36.290.000517
ORF1ab/nsp31578S1578SagTagC11B.1.36.70.004
ORF1ab/nsp31578S1578SagTagC11B.1.4110.003704
ORF1ab/nsp31578S1578GAgtGgt11B.1.4270.00005
ORF1ab/nsp31578S1578SagTagC11B.1.4290.000024
ORF1ab/nsp31578S1578GAgtGgt11B.1.466.20.000391
ORF1ab/nsp31578S1578IaGtaTt11B.1.4700.001404
ORF1ab/nsp31578S1578GAgtGgt11B.1.5260.000024
ORF1ab/nsp31578S1578GAgtGgt11B.1.5440.006024
ORF1ab/nsp31578S1578NaGtaAt11B.1.5460.003704
ORF1ab/nsp31578S1578IaGtaTt11B.1.5580.004566
ORF1ab/nsp31578S1578delAGT---11B.1.5610.000397
ORF1ab/nsp31578S1578GAgtGgt11B.1.5770.000687
ORF1ab/nsp31578S1578GAgtGgt11B.1.5960.000087
ORF1ab/nsp31578S1578del1agTag-11B.1.617.20.000004
ORF1ab/nsp31578S1578KaGTaAA11B.1.617.20.000004
ORF1ab/nsp31578S1578GAgtGgt11B.1.6210.000089
ORF1ab/nsp31578S1578delAGT---11B.1.6210.000089
ORF1ab/nsp31578S1578IaGtaTt11B.1.6230.000536
ORF1ab/nsp31578S1578NaGtaAt11B.1.6370.000073
ORF1ab/nsp31578S1578GAgtGgt11B.120.00641
ORF1ab/nsp31578S1578AAGtGCt11C.350.000774
ORF1ab/nsp31578S1578SagTagC11D.20.000075
ORF1ab/nsp31578S1578IaGtaTt11D.20.000075
ORF1ab/nsp31578S1578IaGtaTt11P.1.120.000484
ORF1ab/nsp31578S1578GAgtGgt11P.1.140.000048
ORF1ab/nsp31578S1578GAgtGgt11P.1.70.000319
ORF1ab/nsp31578S1578GAgtGgt11P.30.001595
ORF1ab/nsp31578S1578GAgtGgt11Q.40.000455