CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1569

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31569F1569VF2387VnonsynTttGtt9007900717424-7426
ORF1ab/nsp31569F1569LF2387LnonsynttTttA2281150.5043867424-7426
ORF1ab/nsp31569F1569LF2387LnonsynTttCtt228950.4166677424-7426
ORF1ab/nsp31569F1569LF2387LnonsynttTttG228180.07894747424-7426
ORF1ab/nsp31569F1569FF2387FsynttTttC646417424-7426
ORF1ab/nsp31569F1569delF2387deldelTTT---575717424-7426
ORF1ab/nsp31569F1569CF2387CnonsyntTttGt343417424-7426
ORF1ab/nsp31569F1569IF2387InonsynTttAtt161617424-7426
ORF1ab/nsp31569F1569SF2387SnonsyntTttCt16150.93757424-7426
ORF1ab/nsp31569F1569SF2387SnonsynTTtAGt1610.06257424-7426
ORF1ab/nsp31569F1569del1F2387del1delTtt-tt11100.9090917424-7426
ORF1ab/nsp31569F1569del1F2387del1delTtT-tG1110.09090917424-7426
ORF1ab/nsp31569F1569YF2387YnonsyntTttAt101017424-7426
ORF1ab/nsp31569F1569del2F2387del2delTTt--t430.757424-7426
ORF1ab/nsp31569F1569del2F2387del2deltTTt--410.257424-7426
ORF1ab/nsp31569F1569HF2387HnonsynTTtCAt1117424-7426
ORF1ab/nsp31569F1569XF2387XnonsyntTTtAA1117424-7426

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31569F1569VTttGtt90079007All0.001723
ORF1ab/nsp31569F1569VTttGtt85408540C.370.991179
ORF1ab/nsp31569F1569VTttGtt371371C.37.10.971204
ORF1ab/nsp31569F1569LttTttA115228All0.000022
ORF1ab/nsp31569F1569LTttCtt95228All0.000018
ORF1ab/nsp31569F1569LttTttG18228All0.000003
ORF1ab/nsp31569F1569FttTttC6464All0.000012
ORF1ab/nsp31569F1569LttTttA6062AY.40.000093
ORF1ab/nsp31569F1569LttTttG262AY.40.000003
ORF1ab/nsp31569F1569delTTT---5757All0.000011
ORF1ab/nsp31569F1569LTttCtt1836B.1.1.70.000016
ORF1ab/nsp31569F1569LttTttA1236B.1.1.70.000011
ORF1ab/nsp31569F1569LttTttG636B.1.1.70.000005
ORF1ab/nsp31569F1569CtTttGt3434All0.000007
ORF1ab/nsp31569F1569delTTT---2121B.1.1.70.000019
ORF1ab/nsp31569F1569FttTttC2020AY.40.000031
ORF1ab/nsp31569F1569LttTttA2020B.1.1.2840.002148
ORF1ab/nsp31569F1569LTttCtt1818AY.250.000108
ORF1ab/nsp31569F1569CtTttGt1717B.1.1.70.000015
ORF1ab/nsp31569F1569ITttAtt1616All0.000003
ORF1ab/nsp31569F1569StTttCt1516All0.000003
ORF1ab/nsp31569F1569STTtAGt116All0
ORF1ab/nsp31569F1569LTttCtt1616B.1.258.170.001664
ORF1ab/nsp31569F1569VTttGtt1414B.1.10.000254
ORF1ab/nsp31569F1569CtTttGt1212B.1.3810.09375
ORF1ab/nsp31569F1569del1Ttt-tt1011All0.000002
ORF1ab/nsp31569F1569del1TtT-tG111All0
ORF1ab/nsp31569F1569ITttAtt1111B.1.1600.000343
ORF1ab/nsp31569F1569YtTttAt1010All0.000002
ORF1ab/nsp31569F1569FttTttC1010B.1.351.20.003026
ORF1ab/nsp31569F1569VTttGtt99B.10.000082
ORF1ab/nsp31569F1569VTttGtt88B.1.617.20.00003
ORF1ab/nsp31569F1569LTttCtt77AY.9.10.000586
ORF1ab/nsp31569F1569LTttCtt57B.10.000046
ORF1ab/nsp31569F1569LttTttA17B.10.000009
ORF1ab/nsp31569F1569LttTttG17B.10.000009
ORF1ab/nsp31569F1569VTttGtt77P.1.150.001626
ORF1ab/nsp31569F1569LttTttA66AY.160.002278
ORF1ab/nsp31569F1569delTTT---66B.10.000055
ORF1ab/nsp31569F1569FttTttC55B.10.000046
ORF1ab/nsp31569F1569LttTttG55B.1.1600.000156
ORF1ab/nsp31569F1569VTttGtt55P.10.000079
ORF1ab/nsp31569F1569del2TTt--t34All0.000001
ORF1ab/nsp31569F1569del2tTTt--14All0
ORF1ab/nsp31569F1569FttTttC44AY.260.000113
ORF1ab/nsp31569F1569VTttGtt44AY.40.000006
ORF1ab/nsp31569F1569VTttGtt44B.1.1.3720.002755
ORF1ab/nsp31569F1569StTttCt44B.1.1.70.000004
ORF1ab/nsp31569F1569LTttCtt44P.10.000063
ORF1ab/nsp31569F1569FttTttC33AY.200.000117
ORF1ab/nsp31569F1569delTTT---33AY.40.000005
ORF1ab/nsp31569F1569LttTttA13AY.430.000004
ORF1ab/nsp31569F1569LttTttG13AY.430.000004
ORF1ab/nsp31569F1569LTttCtt13AY.430.000004
ORF1ab/nsp31569F1569del1Ttt-tt33AY.440.000018
ORF1ab/nsp31569F1569LTttCtt23AY.440.000012
ORF1ab/nsp31569F1569LttTttG13AY.440.000006
ORF1ab/nsp31569F1569VTttGtt33AY.470.000093
ORF1ab/nsp31569F1569LTttCtt33AY.540.000286
ORF1ab/nsp31569F1569StTttCt23B.10.000018
ORF1ab/nsp31569F1569STTtAGt13B.10.000009
ORF1ab/nsp31569F1569VTttGtt33B.1.1.5280.014423
ORF1ab/nsp31569F1569LttTttA23B.1.20.000018
ORF1ab/nsp31569F1569LTttCtt13B.1.20.000009
ORF1ab/nsp31569F1569VTttGtt33B.1.5260.000071
ORF1ab/nsp31569F1569FttTttC33B.1.617.20.000011
ORF1ab/nsp31569F1569LTttCtt23B.1.617.20.000008
ORF1ab/nsp31569F1569LttTttA13B.1.617.20.000004
ORF1ab/nsp31569F1569LttTttA220.111111
ORF1ab/nsp31569F1569FttTttC22AY.1030.000012
ORF1ab/nsp31569F1569YtTttAt22AY.250.000012
ORF1ab/nsp31569F1569delTTT---22AY.250.000012
ORF1ab/nsp31569F1569LttTttA22AY.260.000057
ORF1ab/nsp31569F1569LTttCtt22AY.290.000032
ORF1ab/nsp31569F1569delTTT---22AY.350.000466
ORF1ab/nsp31569F1569YtTttAt22AY.360.000296
ORF1ab/nsp31569F1569FttTttC22AY.390.000049
ORF1ab/nsp31569F1569VTttGtt22AY.4.20.000043
ORF1ab/nsp31569F1569FttTttC22AY.430.000009
ORF1ab/nsp31569F1569del1Ttt-tt22B.10.000018
ORF1ab/nsp31569F1569LTttCtt22B.1.10.000036
ORF1ab/nsp31569F1569VTttGtt22B.1.1.280.000622
ORF1ab/nsp31569F1569VTttGtt22B.1.1.3040.005618
ORF1ab/nsp31569F1569YtTttAt22B.1.1.3060.000877
ORF1ab/nsp31569F1569YtTttAt22B.1.1.70.000002
ORF1ab/nsp31569F1569VTttGtt22B.1.1.70.000002
ORF1ab/nsp31569F1569LTttCtt12B.1.1770.000013
ORF1ab/nsp31569F1569LttTttA12B.1.1770.000013
ORF1ab/nsp31569F1569VTttGtt22B.1.20.000018
ORF1ab/nsp31569F1569LttTttA22B.1.3510.000059
ORF1ab/nsp31569F1569ITttAtt22B.1.351.20.000605
ORF1ab/nsp31569F1569VTttGtt22B.1.466.20.000782
ORF1ab/nsp31569F1569VTttGtt22C.350.001548
ORF1ab/nsp31569F1569VTttGtt22C.390.037736
ORF1ab/nsp31569F1569VTttGtt22P.1.10.000635
ORF1ab/nsp31569F1569VTttGtt22P.1.120.000968
ORF1ab/nsp31569F1569delTTT---11A0.000387
ORF1ab/nsp31569F1569LttTttG11A.10.000282
ORF1ab/nsp31569F1569LTttCtt11AD.20.000219
ORF1ab/nsp31569F1569XtTTtAA11All0
ORF1ab/nsp31569F1569HTTtCAt11All0
ORF1ab/nsp31569F1569del1Ttt-tt11AY.1000.000046
ORF1ab/nsp31569F1569LttTttG11AY.1030.000006
ORF1ab/nsp31569F1569LTttCtt11AY.1130.000142
ORF1ab/nsp31569F1569FttTttC11AY.1160.000287
ORF1ab/nsp31569F1569StTttCt11AY.1180.000063
ORF1ab/nsp31569F1569VTttGtt11AY.1190.000035
ORF1ab/nsp31569F1569StTttCt11AY.1200.000037
ORF1ab/nsp31569F1569VTttGtt11AY.1200.000037
ORF1ab/nsp31569F1569LTttCtt11AY.16.10.00047
ORF1ab/nsp31569F1569LttTttA11AY.200.000039
ORF1ab/nsp31569F1569LttTttA11AY.240.000431
ORF1ab/nsp31569F1569delTTT---11AY.240.000431
ORF1ab/nsp31569F1569StTttCt11AY.250.000006
ORF1ab/nsp31569F1569del1TtT-tG11AY.250.000006
ORF1ab/nsp31569F1569VTttGtt11AY.250.000006
ORF1ab/nsp31569F1569LTttCtt11AY.30.00001
ORF1ab/nsp31569F1569FttTttC11AY.3.10.000085
ORF1ab/nsp31569F1569del2tTTt--11AY.320.000532
ORF1ab/nsp31569F1569VTttGtt11AY.330.000067
ORF1ab/nsp31569F1569LTttCtt11AY.39.10.00004
ORF1ab/nsp31569F1569FttTttC11AY.39.10.00004
ORF1ab/nsp31569F1569ITttAtt11AY.40.000002
ORF1ab/nsp31569F1569CtTttGt11AY.40.000002
ORF1ab/nsp31569F1569StTttCt11AY.40.000002
ORF1ab/nsp31569F1569FttTttC11AY.420.00004
ORF1ab/nsp31569F1569delTTT---11AY.430.000004
ORF1ab/nsp31569F1569FttTttC11AY.440.000006
ORF1ab/nsp31569F1569delTTT---11AY.460.000104
ORF1ab/nsp31569F1569LTttCtt11AY.46.40.000165
ORF1ab/nsp31569F1569VTttGtt11AY.46.60.000072
ORF1ab/nsp31569F1569YtTttAt11AY.470.000031
ORF1ab/nsp31569F1569VTttGtt11AY.50.000021
ORF1ab/nsp31569F1569LTttCtt11AY.50.000021
ORF1ab/nsp31569F1569delTTT---11AY.660.00107
ORF1ab/nsp31569F1569del1Ttt-tt11AY.710.000475
ORF1ab/nsp31569F1569delTTT---11AY.750.000056
ORF1ab/nsp31569F1569LttTttA11AY.750.000056
ORF1ab/nsp31569F1569delTTT---11AY.75.10.00018
ORF1ab/nsp31569F1569VTttGtt11AY.75.10.00018
ORF1ab/nsp31569F1569LttTttA11AY.780.001541
ORF1ab/nsp31569F1569del2TTt--t11AY.90.000068
ORF1ab/nsp31569F1569FttTttC11AY.98.10.000048
ORF1ab/nsp31569F1569delTTT---11AY.99.10.001553
ORF1ab/nsp31569F1569ITttAtt11B.10.000009
ORF1ab/nsp31569F1569CtTttGt11B.10.000009
ORF1ab/nsp31569F1569delTTT---11B.1.10.000018
ORF1ab/nsp31569F1569XtTTtAA11B.1.10.000018
ORF1ab/nsp31569F1569VTttGtt11B.1.1.10.000327
ORF1ab/nsp31569F1569FttTttC11B.1.1.2280.003049
ORF1ab/nsp31569F1569LTttCtt11B.1.1.2750.011236
ORF1ab/nsp31569F1569FttTttC11B.1.1.280.000311
ORF1ab/nsp31569F1569delTTT---11B.1.1.3110.000358
ORF1ab/nsp31569F1569delTTT---11B.1.1.3150.008475
ORF1ab/nsp31569F1569LttTttA11B.1.1.3170.000412
ORF1ab/nsp31569F1569VTttGtt11B.1.1.3480.000796
ORF1ab/nsp31569F1569FttTttC11B.1.1.3540.004386
ORF1ab/nsp31569F1569VTttGtt11B.1.1.4090.002833
ORF1ab/nsp31569F1569delTTT---11B.1.1.4480.002033
ORF1ab/nsp31569F1569delTTT---11B.1.1.460.004367
ORF1ab/nsp31569F1569FttTttC11B.1.1.630.000386
ORF1ab/nsp31569F1569FttTttC11B.1.1.70.000001
ORF1ab/nsp31569F1569del1Ttt-tt11B.1.1.70.000001
ORF1ab/nsp31569F1569del2TTt--t11B.1.1.70.000001
ORF1ab/nsp31569F1569HTTtCAt11B.1.1.70.000001
ORF1ab/nsp31569F1569ITttAtt11B.1.1.70.000001
ORF1ab/nsp31569F1569delTTT---11B.1.1400.018868
ORF1ab/nsp31569F1569delTTT---11B.1.1610.017241
ORF1ab/nsp31569F1569delTTT---11B.1.1770.000013
ORF1ab/nsp31569F1569delTTT---11B.1.177.510.004566
ORF1ab/nsp31569F1569StTttCt11B.1.177.870.000728
ORF1ab/nsp31569F1569delTTT---11B.1.20.000009
ORF1ab/nsp31569F1569StTttCt11B.1.20.000009
ORF1ab/nsp31569F1569del1Ttt-tt11B.1.20.000009
ORF1ab/nsp31569F1569YtTttAt11B.1.2100.002132
ORF1ab/nsp31569F1569VTttGtt11B.1.2210.000071
ORF1ab/nsp31569F1569VTttGtt11B.1.2220.001692
ORF1ab/nsp31569F1569delTTT---11B.1.230.006061
ORF1ab/nsp31569F1569delTTT---11B.1.2580.000067
ORF1ab/nsp31569F1569StTttCt11B.1.3110.000275
ORF1ab/nsp31569F1569del2TTt--t11B.1.3510.00003
ORF1ab/nsp31569F1569CtTttGt11B.1.3510.00003
ORF1ab/nsp31569F1569LTttCtt11B.1.438.10.000107
ORF1ab/nsp31569F1569delTTT---11B.1.5610.000397
ORF1ab/nsp31569F1569del1Ttt-tt11B.1.5760.000907
ORF1ab/nsp31569F1569FttTttC11B.1.5950.000261
ORF1ab/nsp31569F1569VTttGtt11B.1.5960.000087
ORF1ab/nsp31569F1569LTttCtt11B.1.617.10.000129
ORF1ab/nsp31569F1569CtTttGt11B.1.617.20.000004
ORF1ab/nsp31569F1569delTTT---11B.1.617.20.000004
ORF1ab/nsp31569F1569delTTT---11B.1.6210.000089
ORF1ab/nsp31569F1569StTttCt11B.1.6370.000073
ORF1ab/nsp31569F1569LTttCtt11B.3.10.001658
ORF1ab/nsp31569F1569LTttCtt11C.300.001727
ORF1ab/nsp31569F1569VTttGtt11C.36.3.10.002717
ORF1ab/nsp31569F1569VTttGtt11C.400.027778
ORF1ab/nsp31569F1569StTttCt11D.20.000075
ORF1ab/nsp31569F1569LTttCtt11D.20.000075
ORF1ab/nsp31569F1569FttTttC11P.1.100.000269
ORF1ab/nsp31569F1569VTttGtt11P.1.170.000162
ORF1ab/nsp31569F1569CtTttGt11Q.40.000455