CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1568

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31568F1568FF2386FsynttCttT1849184917421-7423
ORF1ab/nsp31568F1568delF2386deldelTTC---646417421-7423
ORF1ab/nsp31568F1568LF2386LnonsynTtcCtc1780.4705887421-7423
ORF1ab/nsp31568F1568LF2386LnonsynttCttA1780.4705887421-7423
ORF1ab/nsp31568F1568LF2386LnonsynTtCCtA1710.05882357421-7423
ORF1ab/nsp31568F1568SF2386SnonsyntTctCc1170.6363647421-7423
ORF1ab/nsp31568F1568SF2386SnonsyntTCtCT1140.3636367421-7423
ORF1ab/nsp31568F1568IF2386InonsynTtcAtc5517421-7423
ORF1ab/nsp31568F1568CF2386CnonsyntTctGc5517421-7423
ORF1ab/nsp31568F1568YF2386YnonsyntTctAc3317421-7423
ORF1ab/nsp31568F1568VF2386VnonsynTtcGtc2217421-7423
ORF1ab/nsp31568F1568RF2386RnonsynTTCCGT1117421-7423
ORF1ab/nsp31568F1568del1F2386del1delttCtt-1117421-7423

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31568F1568FttCttT18491849All0.000354
ORF1ab/nsp31568F1568FttCttT238238B.1.1.70.000213
ORF1ab/nsp31568F1568FttCttT179179AY.40.000279
ORF1ab/nsp31568F1568FttCttT170170B.1.4290.004
ORF1ab/nsp31568F1568FttCttT9595B.1.617.20.000358
ORF1ab/nsp31568F1568FttCttT8484AY.750.004706
ORF1ab/nsp31568F1568FttCttT7272B.1.258.170.007486
ORF1ab/nsp31568F1568FttCttT7070B.1.1770.000922
ORF1ab/nsp31568F1568FttCttT6868B.261
ORF1ab/nsp31568F1568delTTC---6464All0.000012
ORF1ab/nsp31568F1568FttCttT6464AY.1030.000397
ORF1ab/nsp31568F1568FttCttT6464B.1.20.000564
ORF1ab/nsp31568F1568FttCttT4444AY.30.000438
ORF1ab/nsp31568F1568FttCttT3737AY.4.20.000802
ORF1ab/nsp31568F1568FttCttT3434AY.430.000151
ORF1ab/nsp31568F1568FttCttT3434B.1.2210.002415
ORF1ab/nsp31568F1568FttCttT3131AY.440.000189
ORF1ab/nsp31568F1568FttCttT2727B.10.000247
ORF1ab/nsp31568F1568FttCttT2323B.1.1.4030.589744
ORF1ab/nsp31568F1568delTTC---2323B.1.1.70.000021
ORF1ab/nsp31568F1568FttCttT2222AY.250.000132
ORF1ab/nsp31568F1568FttCttT1919B.1.4270.000959
ORF1ab/nsp31568F1568LttCttA817All0.000002
ORF1ab/nsp31568F1568LTtcCtc817All0.000002
ORF1ab/nsp31568F1568LTtCCtA117All0
ORF1ab/nsp31568F1568FttCttT1616B.1.10.00029
ORF1ab/nsp31568F1568FttCttT1515D.41
ORF1ab/nsp31568F1568FttCttT1515P.1.140.000717
ORF1ab/nsp31568F1568FttCttT1414P.10.000221
ORF1ab/nsp31568F1568FttCttT1313AY.90.000879
ORF1ab/nsp31568F1568FttCttT1212C.370.001393
ORF1ab/nsp31568F1568FttCttT1111A.2.5.20.017296
ORF1ab/nsp31568F1568StTctCc711All0.000001
ORF1ab/nsp31568F1568StTCtCT411All0.000001
ORF1ab/nsp31568F1568FttCttT1111AY.1000.000506
ORF1ab/nsp31568F1568FttCttT1111B.1.1.2200.020446
ORF1ab/nsp31568F1568FttCttT1111B.1.3660.053659
ORF1ab/nsp31568F1568FttCttT1111B.1.5260.000259
ORF1ab/nsp31568F1568FttCttT1111B.1.5950.002871
ORF1ab/nsp31568F1568FttCttT1111B.350.085938
ORF1ab/nsp31568F1568FttCttT1010AY.650.00533
ORF1ab/nsp31568F1568FttCttT1010B.1.4780.117647
ORF1ab/nsp31568F1568FttCttT99B.1.177.600.001966
ORF1ab/nsp31568F1568FttCttT99B.1.6210.000797
ORF1ab/nsp31568F1568FttCttT88AY.1050.005145
ORF1ab/nsp31568F1568FttCttT88AY.620.003486
ORF1ab/nsp31568F1568FttCttT88AY.99.20.000737
ORF1ab/nsp31568F1568FttCttT88B0.001022
ORF1ab/nsp31568F1568FttCttT88B.1.1.5190.000318
ORF1ab/nsp31568F1568FttCttT88B.1.177.730.00453
ORF1ab/nsp31568F1568FttCttT88C.350.006192
ORF1ab/nsp31568F1568FttCttT77AY.260.000198
ORF1ab/nsp31568F1568FttCttT77AY.450.000852
ORF1ab/nsp31568F1568FttCttT66AY.470.000187
ORF1ab/nsp31568F1568delTTC---66B.10.000055
ORF1ab/nsp31568F1568FttCttT66B.1.1.3630.035928
ORF1ab/nsp31568F1568FttCttT66B.1.1470.004535
ORF1ab/nsp31568F1568ITtcAtc55All0.000001
ORF1ab/nsp31568F1568CtTctGc55All0.000001
ORF1ab/nsp31568F1568FttCttT55AY.140.00044
ORF1ab/nsp31568F1568FttCttT55AY.200.000194
ORF1ab/nsp31568F1568FttCttT55AY.3.10.000426
ORF1ab/nsp31568F1568FttCttT55B.1.5960.000436
ORF1ab/nsp31568F1568FttCttT55B.1.619.10.003207
ORF1ab/nsp31568F1568FttCttT44AY.1180.000251
ORF1ab/nsp31568F1568FttCttT44AY.230.000279
ORF1ab/nsp31568F1568FttCttT44AY.460.000416
ORF1ab/nsp31568F1568FttCttT44AY.50.000083
ORF1ab/nsp31568F1568FttCttT44AY.940.001771
ORF1ab/nsp31568F1568FttCttT44B.1.1.2800.012346
ORF1ab/nsp31568F1568FttCttT44B.1.360.000584
ORF1ab/nsp31568F1568FttCttT44Q.10.000505
ORF1ab/nsp31568F1568YtTctAc33All0.000001
ORF1ab/nsp31568F1568FttCttT33AY.1020.00008
ORF1ab/nsp31568F1568delTTC---33AY.250.000018
ORF1ab/nsp31568F1568FttCttT33AY.360.000445
ORF1ab/nsp31568F1568FttCttT33AY.390.000074
ORF1ab/nsp31568F1568FttCttT33AY.39.10.000119
ORF1ab/nsp31568F1568delTTC---33AY.40.000005
ORF1ab/nsp31568F1568FttCttT33AY.46.60.000217
ORF1ab/nsp31568F1568FttCttT33AY.9.20.00011
ORF1ab/nsp31568F1568LTtcCtc23B.10.000018
ORF1ab/nsp31568F1568LttCttA13B.10.000009
ORF1ab/nsp31568F1568FttCttT33B.1.1.3690.001339
ORF1ab/nsp31568F1568FttCttT33B.1.177.450.001144
ORF1ab/nsp31568F1568FttCttT33B.1.2580.0002
ORF1ab/nsp31568F1568FttCttT33B.1.258.240.032258
ORF1ab/nsp31568F1568FttCttT33B.1.264.10.142857
ORF1ab/nsp31568F1568FttCttT33B.1.3510.000089
ORF1ab/nsp31568F1568FttCttT33B.1.466.20.001174
ORF1ab/nsp31568F1568FttCttT33B.1.6280.001057
ORF1ab/nsp31568F1568LTtcCtc220.111111
ORF1ab/nsp31568F1568VTtcGtc22All0
ORF1ab/nsp31568F1568FttCttT22AY.10.000791
ORF1ab/nsp31568F1568FttCttT22AY.1100.000225
ORF1ab/nsp31568F1568FttCttT22AY.1190.000071
ORF1ab/nsp31568F1568FttCttT22AY.290.000032
ORF1ab/nsp31568F1568FttCttT22AY.330.000134
ORF1ab/nsp31568F1568delTTC---22AY.350.000466
ORF1ab/nsp31568F1568LttCttA22AY.430.000009
ORF1ab/nsp31568F1568FttCttT22AY.610.00021
ORF1ab/nsp31568F1568FttCttT22AY.850.000854
ORF1ab/nsp31568F1568FttCttT22AY.980.000158
ORF1ab/nsp31568F1568LTtcCtc12B0.000128
ORF1ab/nsp31568F1568LttCttA12B0.000128
ORF1ab/nsp31568F1568YtTctAc22B.10.000018
ORF1ab/nsp31568F1568FttCttT22B.1.1.3180.000604
ORF1ab/nsp31568F1568FttCttT22B.1.1600.000062
ORF1ab/nsp31568F1568delTTC---22B.1.1770.000026
ORF1ab/nsp31568F1568FttCttT22B.1.177.120.000303
ORF1ab/nsp31568F1568FttCttT22B.1.177.800.003824
ORF1ab/nsp31568F1568FttCttT22B.1.177.860.000367
ORF1ab/nsp31568F1568LTtcCtc12B.1.20.000009
ORF1ab/nsp31568F1568LttCttA12B.1.20.000009
ORF1ab/nsp31568F1568FttCttT22B.1.2340.000264
ORF1ab/nsp31568F1568FttCttT22B.1.2400.000431
ORF1ab/nsp31568F1568FttCttT22B.1.2430.000139
ORF1ab/nsp31568F1568FttCttT22P.1.150.000465
ORF1ab/nsp31568F1568FttCttT22P.1.20.002312
ORF1ab/nsp31568F1568delTTC---11A0.000387
ORF1ab/nsp31568F1568StTctCc11A.2.40.003367
ORF1ab/nsp31568F1568RTTCCGT11All0
ORF1ab/nsp31568F1568del1ttCtt-11All0
ORF1ab/nsp31568F1568StTctCc11AY.1030.000006
ORF1ab/nsp31568F1568FttCttT11AY.1170.000085
ORF1ab/nsp31568F1568FttCttT11AY.1200.000037
ORF1ab/nsp31568F1568StTCtCT11AY.1210.000135
ORF1ab/nsp31568F1568FttCttT11AY.130.000161
ORF1ab/nsp31568F1568FttCttT11AY.190.00114
ORF1ab/nsp31568F1568delTTC---11AY.240.000431
ORF1ab/nsp31568F1568FttCttT11AY.270.000065
ORF1ab/nsp31568F1568CtTctGc11AY.340.000097
ORF1ab/nsp31568F1568FttCttT11AY.34.10.00051
ORF1ab/nsp31568F1568LTtcCtc11AY.40.000002
ORF1ab/nsp31568F1568YtTctAc11AY.4.50.000107
ORF1ab/nsp31568F1568FttCttT11AY.4.50.000107
ORF1ab/nsp31568F1568CtTctGc11AY.430.000004
ORF1ab/nsp31568F1568delTTC---11AY.430.000004
ORF1ab/nsp31568F1568ITtcAtc11AY.440.000006
ORF1ab/nsp31568F1568VTtcGtc11AY.460.000104
ORF1ab/nsp31568F1568delTTC---11AY.460.000104
ORF1ab/nsp31568F1568delTTC---11AY.46.60.000072
ORF1ab/nsp31568F1568FttCttT11AY.520.000814
ORF1ab/nsp31568F1568StTCtCT11AY.620.000436
ORF1ab/nsp31568F1568delTTC---11AY.660.00107
ORF1ab/nsp31568F1568CtTctGc11AY.7.10.000113
ORF1ab/nsp31568F1568FttCttT11AY.7.10.000113
ORF1ab/nsp31568F1568delTTC---11AY.750.000056
ORF1ab/nsp31568F1568delTTC---11AY.75.10.00018
ORF1ab/nsp31568F1568FttCttT11AY.75.10.00018
ORF1ab/nsp31568F1568FttCttT11AY.770.001127
ORF1ab/nsp31568F1568FttCttT11AY.790.001211
ORF1ab/nsp31568F1568FttCttT11AY.860.00083
ORF1ab/nsp31568F1568delTTC---11AY.90.000068
ORF1ab/nsp31568F1568FttCttT11AY.98.10.000048
ORF1ab/nsp31568F1568FttCttT11AY.99.10.001553
ORF1ab/nsp31568F1568delTTC---11AY.99.10.001553
ORF1ab/nsp31568F1568RTTCCGT11B.10.000009
ORF1ab/nsp31568F1568StTctCc11B.10.000009
ORF1ab/nsp31568F1568StTctCc11B.1.10.000018
ORF1ab/nsp31568F1568LttCttA11B.1.10.000018
ORF1ab/nsp31568F1568CtTctGc11B.1.10.000018
ORF1ab/nsp31568F1568delTTC---11B.1.10.000018
ORF1ab/nsp31568F1568StTctCc11B.1.1.10.000327
ORF1ab/nsp31568F1568FttCttT11B.1.1.1090.04
ORF1ab/nsp31568F1568FttCttT11B.1.1.1890.001513
ORF1ab/nsp31568F1568FttCttT11B.1.1.2770.000759
ORF1ab/nsp31568F1568FttCttT11B.1.1.280.000311
ORF1ab/nsp31568F1568FttCttT11B.1.1.2890.002083
ORF1ab/nsp31568F1568FttCttT11B.1.1.3030.002762
ORF1ab/nsp31568F1568StTCtCT11B.1.1.3060.000438
ORF1ab/nsp31568F1568FttCttT11B.1.1.3060.000438
ORF1ab/nsp31568F1568delTTC---11B.1.1.3110.000358
ORF1ab/nsp31568F1568delTTC---11B.1.1.3150.008475
ORF1ab/nsp31568F1568FttCttT11B.1.1.3170.000412
ORF1ab/nsp31568F1568FttCttT11B.1.1.3540.004386
ORF1ab/nsp31568F1568StTctCc11B.1.1.3760.005952
ORF1ab/nsp31568F1568FttCttT11B.1.1.4340.000349
ORF1ab/nsp31568F1568FttCttT11B.1.1.4370.010417
ORF1ab/nsp31568F1568delTTC---11B.1.1.4480.002033
ORF1ab/nsp31568F1568delTTC---11B.1.1.460.004367
ORF1ab/nsp31568F1568LTtCCtA11B.1.1.70.000001
ORF1ab/nsp31568F1568ITtcAtc11B.1.1.70.000001
ORF1ab/nsp31568F1568FttCttT11B.1.110.30.000718
ORF1ab/nsp31568F1568delTTC---11B.1.1400.018868
ORF1ab/nsp31568F1568LTtcCtc11B.1.1600.000031
ORF1ab/nsp31568F1568delTTC---11B.1.1610.017241
ORF1ab/nsp31568F1568LttCttA11B.1.1770.000013
ORF1ab/nsp31568F1568FttCttT11B.1.177.40.000211
ORF1ab/nsp31568F1568delTTC---11B.1.177.510.004566
ORF1ab/nsp31568F1568FttCttT11B.1.177.70.000165
ORF1ab/nsp31568F1568CtTctGc11B.1.177.730.000566
ORF1ab/nsp31568F1568FttCttT11B.1.177.740.015152
ORF1ab/nsp31568F1568FttCttT11B.1.177.880.012346
ORF1ab/nsp31568F1568delTTC---11B.1.20.000009
ORF1ab/nsp31568F1568StTctCc11B.1.20.000009
ORF1ab/nsp31568F1568ITtcAtc11B.1.20.000009
ORF1ab/nsp31568F1568FttCttT11B.1.2060.000816
ORF1ab/nsp31568F1568FttCttT11B.1.221.30.000833
ORF1ab/nsp31568F1568delTTC---11B.1.230.006061
ORF1ab/nsp31568F1568FttCttT11B.1.2390.001221
ORF1ab/nsp31568F1568LttCttA11B.1.2580.000067
ORF1ab/nsp31568F1568delTTC---11B.1.2580.000067
ORF1ab/nsp31568F1568ITtcAtc11B.1.2580.000067
ORF1ab/nsp31568F1568FttCttT11B.1.2640.012346
ORF1ab/nsp31568F1568FttCttT11B.1.2790.000514
ORF1ab/nsp31568F1568FttCttT11B.1.3110.000275
ORF1ab/nsp31568F1568StTCtCT11B.1.3110.000275
ORF1ab/nsp31568F1568FttCttT11B.1.3460.001311
ORF1ab/nsp31568F1568delTTC---11B.1.3510.00003
ORF1ab/nsp31568F1568FttCttT11B.1.4000.000429
ORF1ab/nsp31568F1568FttCttT11B.1.416.10.001563
ORF1ab/nsp31568F1568FttCttT11B.1.4280.00102
ORF1ab/nsp31568F1568FttCttT11B.1.5170.000427
ORF1ab/nsp31568F1568FttCttT11B.1.5250.000113
ORF1ab/nsp31568F1568ITtcAtc11B.1.5260.000024
ORF1ab/nsp31568F1568FttCttT11B.1.5580.004566
ORF1ab/nsp31568F1568delTTC---11B.1.5610.000397
ORF1ab/nsp31568F1568FttCttT11B.1.5640.000426
ORF1ab/nsp31568F1568FttCttT11B.1.5750.000303
ORF1ab/nsp31568F1568FttCttT11B.1.5760.000907
ORF1ab/nsp31568F1568delTTC---11B.1.617.20.000004
ORF1ab/nsp31568F1568delTTC---11B.1.6210.000089
ORF1ab/nsp31568F1568FttCttT11B.1.6230.000536
ORF1ab/nsp31568F1568VTtcGtc11D.20.000075
ORF1ab/nsp31568F1568FttCttT11D.20.000075
ORF1ab/nsp31568F1568del1ttCtt-11P.1.120.000484
ORF1ab/nsp31568F1568FttCttT11Q.40.000455
ORF1ab/nsp31568F1568FttCttT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.