CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1567 | I1567I | I2385I | syn | atC | atT | 22177 | 21907 | 0.987825 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567I | I2385I | syn | atC | atA | 22177 | 270 | 0.0121748 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567V | I2385V | nonsyn | Atc | Gtc | 699 | 699 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567T | I2385T | nonsyn | aTc | aCc | 81 | 79 | 0.975309 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567T | I2385T | nonsyn | aTC | aCA | 81 | 2 | 0.0246914 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567del | I2385del | del | ATC | --- | 63 | 63 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567M | I2385M | nonsyn | atC | atG | 3 | 3 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567L | I2385L | nonsyn | Atc | Ctc | 3 | 3 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567R | I2385R | nonsyn | aTC | aGG | 2 | 1 | 0.5 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567R | I2385R | nonsyn | ATC | CGT | 2 | 1 | 0.5 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567F | I2385F | nonsyn | Atc | Ttc | 1 | 1 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567del1 | I2385del1 | del | atC | at- | 1 | 1 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567N | I2385N | nonsyn | aTc | aAc | 1 | 1 | 1 | 7418-7420 |
ORF1ab/nsp3 | 1567 | I1567A | I2385A | nonsyn | ATc | GCc | 1 | 1 | 1 | 7418-7420 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 21907 | 22177 | All | 0.00419 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 270 | 22177 | All | 0.000052 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3548 | 3635 | B.1.1.7 | 0.003176 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 87 | 3635 | B.1.1.7 | 0.000078 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3429 | 3442 | B.1.617.2 | 0.012912 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 13 | 3442 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2857 | 2935 | AY.4 | 0.004447 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 78 | 2935 | AY.4 | 0.000121 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2396 | 2397 | AY.43 | 0.010615 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 2397 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1102 | 1103 | B.1.2 | 0.009704 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 1103 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 796 | 796 | AY.29 | 0.012556 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 761 | 762 | AY.103 | 0.004725 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 762 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 699 | 699 | All | 0.000134 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 578 | 578 | AY.25 | 0.003477 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 547 | 548 | AY.120 | 0.020337 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 548 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 364 | 364 | AY.42 | 0.014644 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 318 | 327 | AY.44 | 0.001936 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 9 | 327 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 281 | 284 | AY.102 | 0.00745 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 3 | 284 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 277 | 277 | AY.118 | 0.017354 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 238 | 240 | B.1 | 0.00218 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 240 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 217 | 219 | B.1.177 | 0.002857 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 219 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 214 | 215 | AY.25 | 0.001287 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 215 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 188 | 188 | Z.1 | 0.543353 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 178 | 178 | B.1.1.289 | 0.370833 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 163 | 163 | B.1.1.63 | 0.062886 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 150 | 153 | AY.39 | 0.003707 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 3 | 153 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 144 | 144 | B.1.380 | 0.953642 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 106 | 116 | B.1.1 | 0.001923 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 10 | 116 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 115 | 115 | AY.47 | 0.003577 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 111 | 111 | B.1.369 | 0.03166 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 82 | 90 | B.1.429 | 0.001929 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 8 | 90 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 85 | 87 | AY.46 | 0.008847 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 87 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 83 | 84 | AY.3 | 0.000826 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 84 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 83 | 83 | AY.117 | 0.007015 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 79 | 81 | All | 0.000015 |
ORF1ab/nsp3 | 1567 | I1567T | aTC | aCA | 2 | 81 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 81 | 81 | B.1.1.25 | 0.046049 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 80 | 80 | B.1.517 | 0.034159 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 75 | 80 | P.1 | 0.001182 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 5 | 80 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 73 | 73 | AY.5.4 | 0.020199 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 70 | 70 | AA.4 | 0.636364 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 65 | 65 | AY.33 | 0.004341 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 65 | 65 | B.1.258 | 0.004326 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 63 | 64 | B.1.1.519 | 0.002502 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 64 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 63 | 63 | All | 0.000012 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 63 | 63 | B.1.524 | 0.088608 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 60 | 60 | B.1.1.170 | 0.074813 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 50 | 59 | AY.75 | 0.002801 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 9 | 59 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 56 | 57 | AY.23 | 0.003906 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 57 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 57 | 57 | B.1.628 | 0.020085 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 54 | 54 | AY.3.1 | 0.004604 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 54 | 54 | B.1.160 | 0.001684 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 49 | 49 | B.1.1.258 | 0.159609 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 44 | 44 | B.1.1.343 | 0.916667 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 42 | 43 | B.1.351 | 0.001249 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 43 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 40 | 42 | AY.20 | 0.001555 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 42 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 42 | 42 | B.1.596 | 0.00366 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 40 | 40 | P.1.15 | 0.009294 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 37 | 37 | B.1.526 | 0.00087 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 35 | 35 | P.2 | 0.006532 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 33 | 33 | AY.4.2.1 | 0.004917 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 33 | 33 | AY.9.2 | 0.001212 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 32 | 32 | AY.32 | 0.017039 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 31 | 31 | AY.12 | 0.009798 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 31 | 31 | B.1.177.21 | 0.002371 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 30 | 30 | B.1.93 | 0.028011 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 28 | 28 | B.1.258.17 | 0.002911 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 27 | 27 | B.1.618 | 0.108871 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 26 | 26 | B.1.1.216 | 0.023152 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 25 | 25 | B.1.1.306 | 0.01096 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 24 | 24 | B.1.1.214 | 0.001331 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 23 | 23 | AY.13 | 0.003703 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 20 | 23 | AY.45 | 0.002434 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 3 | 23 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 22 | 22 | AY.111 | 0.004029 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 22 | 22 | AY.4.5 | 0.002365 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 22 | 22 | B.1.1.157 | 0.020091 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 19 | 22 | P.1.14 | 0.000908 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 3 | 22 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 21 | 21 | B.1.1.351 | 0.058659 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 21 | 21 | B.13 | 0.954545 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 20 | 20 | AY.121 | 0.002706 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 18 | 18 | AY.119 | 0.000636 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 18 | 18 | AY.85 | 0.007689 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 18 | 18 | AY.98.1 | 0.000872 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 18 | 18 | B.1.1.284 | 0.001933 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 17 | 17 | AY.34.1 | 0.008669 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 17 | 17 | B.1.474 | 0.032319 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 17 | B.1.595 | 0.00261 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 7 | 17 | B.1.595 | 0.001827 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 14 | 16 | AY.61 | 0.001467 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 16 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 16 | 16 | AY.86 | 0.013278 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 16 | 16 | B.1.617.1 | 0.002063 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 16 | 16 | R.1 | 0.00144 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 15 | 15 | B.1.1.141 | 0.030181 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 15 | 15 | B.1.621 | 0.001328 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 14 | 14 | AY.88 | 0.012378 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 13 | 14 | B.1.311 | 0.003569 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 14 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 14 | 14 | B.1.582 | 0.006869 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 13 | 13 | AY.5.3 | 0.004386 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 13 | 13 | B.1.306 | 0.074286 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 13 | 13 | B.1.617.3 | 0.038806 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 12 | 12 | B.1.1.318 | 0.003621 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 11 | 11 | AY.9.1 | 0.000921 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 11 | 11 | B.1.1.37 | 0.002122 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 11 | 11 | B.1.177.32 | 0.014845 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 11 | 11 | B.1.438.1 | 0.00118 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | AA.1 | 0.072464 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 10 | 10 | AY.120 | 0.000372 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 10 | 10 | AY.71 | 0.004751 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | B.1.1.297 | 0.022371 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | B.1.1.512 | 0.285714 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | B.1.177.86 | 0.001835 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | B.1.525 | 0.001132 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | B.1.627 | 0.020202 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 10 | 10 | P.1.7 | 0.003193 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 9 | 9 | AY.105 | 0.005788 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 9 | 9 | AY.116 | 0.002581 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 9 | 9 | AY.116.1 | 0.002803 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 9 | 9 | C.36.3 | 0.005105 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 9 | 9 | D.2 | 0.000675 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | AY.84 | 0.0035 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | AY.93 | 0.002185 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | B.1.1.377 | 0.01105 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | B.1.381 | 0.0625 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 7 | 7 | AY.120.2 | 0.008997 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 7 | 7 | AY.78 | 0.010786 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 7 | 7 | B.1.564 | 0.002981 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 7 | 7 | C.36 | 0.006375 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | AW.1 | 0.018293 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | AY.37 | 0.001896 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | AY.89 | 0.029412 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 6 | B | 0.000639 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 6 | B | 0.000128 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.420 | 0.0625 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | B.40 | 0.002186 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | P.1.10 | 0.001617 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.29.1 | 0.001103 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.4.3 | 0.004209 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.41 | 0.00147 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.1.218 | 0.038462 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.1.263 | 0.007788 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.1.448 | 0.010163 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.104 | 0.01845 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 5 | 5 | B.1.177.83 | 0.007407 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 5 | 5 | B.1.575.1 | 0.012195 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 4 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 4 | AE.8 | 0.000978 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | AY.95 | 0.003044 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.1.374 | 0.009501 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.1.462 | 0.034483 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.349 | 0.002859 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp3 | 1567 | I1567L | Atc | Ctc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1567 | I1567M | atC | atG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 3 | 3 | B.1.1.159 | 0.014019 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 3 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 3 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.1.354 | 0.013158 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.177.48 | 0.009375 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.199 | 0.012397 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 3 | B.1.210 | 0.004264 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 3 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.397 | 0.014563 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.469 | 0.01083 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.551 | 0.003871 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | B.1.636 | 0.020134 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 1567 | I1567M | atC | atG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | A.19 | 0.018868 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AA.7 | 0.018349 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AH.3 | 0.007605 |
ORF1ab/nsp3 | 1567 | I1567R | ATC | CGT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567R | aTC | aGG | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.347 | 0.036364 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.431 | 0.032258 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.1.526 | 0.007092 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 2 | 2 | B.1.325 | 0.013793 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.498 | 0.040816 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.578 | 0.035714 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | B.1.590 | 0.009091 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | P.1.8 | 0.009569 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AE.4 | 0.043478 |
ORF1ab/nsp3 | 1567 | I1567del1 | atC | at- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567A | ATc | GCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567N | aTc | aAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567F | Atc | Ttc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1567 | I1567L | Atc | Ctc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1567 | I1567R | aTC | aGG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.142 | 0.017544 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1567 | I1567L | Atc | Ctc | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.336 | 0.016667 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1567 | I1567F | Atc | Ttc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1567 | I1567R | ATC | CGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.163 | 0.02439 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1567 | I1567N | aTc | aAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1567 | I1567L | Atc | Ctc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1567 | I1567M | atC | atG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.263 | 0.047619 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1567 | I1567T | aTC | aCA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.315 | 0.006061 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1567 | I1567A | ATc | GCc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.417 | 0.028571 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.438 | 0.006536 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.575.2 | 0.004808 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.598 | 0.016949 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1567 | I1567del1 | atC | at- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1567 | I1567del | ATC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1567 | I1567T | aTC | aCA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 1567 | I1567T | aTc | aCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1567 | I1567V | Atc | Gtc | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1567 | I1567I | atC | atT | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|