CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1558 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31558P1558PP2376PsynccGccA2756811780.04273077391-7393

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31558P1558PccGccA117827568All0.000225
ORF1ab/nsp31558P1558PccGccA2062151AY.40.000321
ORF1ab/nsp31558P1558PccGccA1391944B.1.1.70.000124
ORF1ab/nsp31558P1558PccGccA261300B.1.617.20.000098
ORF1ab/nsp31558P1558PccGccA161129AY.430.000071
ORF1ab/nsp31558P1558PccGccA2538AY.4.20.000043
ORF1ab/nsp31558P1558PccGccA99343AY.250.000595
ORF1ab/nsp31558P1558PccGccA155272B.1.20.001365
ORF1ab/nsp31558P1558PccGccA22216AY.440.000134
ORF1ab/nsp31558P1558PccGccA51160P.10.000803
ORF1ab/nsp31558P1558PccGccA11143B.1.1600.000343
ORF1ab/nsp31558P1558PccGccA34142AY.1030.000211
ORF1ab/nsp31558P1558PccGccA14117B.10.000128
ORF1ab/nsp31558P1558PccGccA2108AY.50.000041
ORF1ab/nsp31558P1558PccGccA18101AY.30.000179
ORF1ab/nsp31558P1558PccGccA2100B.1.2430.000139
ORF1ab/nsp31558P1558PccGccA597AY.1020.000133
ORF1ab/nsp31558P1558PccGccA1989B.1.1770.00025
ORF1ab/nsp31558P1558PccGccA1283B.1.10.000218
ORF1ab/nsp31558P1558PccGccA566AY.200.000194
ORF1ab/nsp31558P1558PccGccA163AZ.20.000821
ORF1ab/nsp31558P1558PccGccA1859AY.390.000445
ORF1ab/nsp31558P1558PccGccA557AY.1000.00023
ORF1ab/nsp31558P1558PccGccA450AY.260.000113
ORF1ab/nsp31558P1558PccGccA147AY.60.000041
ORF1ab/nsp31558P1558PccGccA846B.1.4290.000188
ORF1ab/nsp31558P1558PccGccA140AY.75.10.00018
ORF1ab/nsp31558P1558PccGccA839B.1.5260.000188
ORF1ab/nsp31558P1558PccGccA131AY.470.000031
ORF1ab/nsp31558P1558PccGccA1231C.370.001393
ORF1ab/nsp31558P1558PccGccA1529P.1.140.000717
ORF1ab/nsp31558P1558PccGccA427B.1.6210.000354
ORF1ab/nsp31558P1558PccGccA226AY.330.000134
ORF1ab/nsp31558P1558PccGccA425AY.1200.000149
ORF1ab/nsp31558P1558PccGccA124B.1.1.5190.00004
ORF1ab/nsp31558P1558PccGccA124B.1.3510.00003
ORF1ab/nsp31558P1558PccGccA123AY.420.00004
ORF1ab/nsp31558P1558PccGccA222AY.340.000194
ORF1ab/nsp31558P1558PccGccA622B.1.1.2220.001224
ORF1ab/nsp31558P1558PccGccA122B.1.3200.001245
ORF1ab/nsp31558P1558PccGccA622B.1.360.000875
ORF1ab/nsp31558P1558PccGccA222P.1.150.000465
ORF1ab/nsp31558P1558PccGccA120AY.460.000104
ORF1ab/nsp31558P1558PccGccA1819B.1.2210.001279
ORF1ab/nsp31558P1558PccGccA1819B.1.36.180.007563
ORF1ab/nsp31558P1558PccGccA518AY.290.000079
ORF1ab/nsp31558P1558PccGccA1618AY.39.10.000634
ORF1ab/nsp31558P1558PccGccA1818B.1.1.3430.375
ORF1ab/nsp31558P1558PccGccA1818B.1.6310.060606
ORF1ab/nsp31558P1558PccGccA117AY.840.000437
ORF1ab/nsp31558P1558PccGccA917B.1.4270.000454
ORF1ab/nsp31558P1558PccGccA616AY.1190.000212
ORF1ab/nsp31558P1558PccGccA1216B.1.177.860.002201
ORF1ab/nsp31558P1558PccGccA514AY.650.002665
ORF1ab/nsp31558P1558PccGccA113AY.46.60.000072
ORF1ab/nsp31558P1558PccGccA212AY.1060.00067
ORF1ab/nsp31558P1558PccGccA711AY.46.50.001389
ORF1ab/nsp31558P1558PccGccA311B.1.5960.000261
ORF1ab/nsp31558P1558PccGccA110AY.980.000079
ORF1ab/nsp31558P1558PccGccA210B.1.1.2160.001781
ORF1ab/nsp31558P1558PccGccA110P.1.20.001156
ORF1ab/nsp31558P1558PccGccA19AY.9.20.000037
ORF1ab/nsp31558P1558PccGccA48AY.700.000834
ORF1ab/nsp31558P1558PccGccA58B.1.1.280.001556
ORF1ab/nsp31558P1558PccGccA77B.1.1.1760.003076
ORF1ab/nsp31558P1558PccGccA77B.1.1.2320.012704
ORF1ab/nsp31558P1558PccGccA37B.1.2410.002435
ORF1ab/nsp31558P1558PccGccA26AY.1100.000225
ORF1ab/nsp31558P1558PccGccA36AY.160.001139
ORF1ab/nsp31558P1558PccGccA26B.1.177.430.002954
ORF1ab/nsp31558P1558PccGccA15AY.1110.000183
ORF1ab/nsp31558P1558PccGccA15AY.1130.000142
ORF1ab/nsp31558P1558PccGccA55B.1.1.670.022831
ORF1ab/nsp31558P1558PccGccA25B.1.2580.000133
ORF1ab/nsp31558P1558PccGccA15P.1.70.000319
ORF1ab/nsp31558P1558PccGccA15Q.30.000145
ORF1ab/nsp31558P1558PccGccA14A.2.50.000499
ORF1ab/nsp31558P1558PccGccA14AY.950.000761
ORF1ab/nsp31558P1558PccGccA14B.1.1.250.000569
ORF1ab/nsp31558P1558PccGccA14B.1.1.2940.001266
ORF1ab/nsp31558P1558PccGccA44B.1.36.310.007005
ORF1ab/nsp31558P1558PccGccA24B.1.4000.000858
ORF1ab/nsp31558P1558PccGccA14Q.80.000165
ORF1ab/nsp31558P1558PccGccA230.111111
ORF1ab/nsp31558P1558PccGccA13B.1.1.2840.000107
ORF1ab/nsp31558P1558PccGccA13B.1.177.210.000076
ORF1ab/nsp31558P1558PccGccA23B.1.177.820.000955
ORF1ab/nsp31558P1558PccGccA13B.1.466.20.000391
ORF1ab/nsp31558P1558PccGccA23B.1.621.10.001012
ORF1ab/nsp31558P1558PccGccA13P.1.120.000484
ORF1ab/nsp31558P1558PccGccA23P.1.170.000324
ORF1ab/nsp31558P1558PccGccA12AY.120.000316
ORF1ab/nsp31558P1558PccGccA12AY.530.000288
ORF1ab/nsp31558P1558PccGccA12AY.590.00053
ORF1ab/nsp31558P1558PccGccA12AY.850.000427
ORF1ab/nsp31558P1558PccGccA22B.1.177.770.001452
ORF1ab/nsp31558P1558PccGccA12B.1.5090.000866
ORF1ab/nsp31558P1558PccGccA12C.10.002392
ORF1ab/nsp31558P1558PccGccA12R.10.00009
ORF1ab/nsp31558P1558PccGccA11AY.320.000532
ORF1ab/nsp31558P1558PccGccA11B.1.1.100.001115
ORF1ab/nsp31558P1558PccGccA11B.1.1.2200.001859
ORF1ab/nsp31558P1558PccGccA11B.1.1.3040.002809
ORF1ab/nsp31558P1558PccGccA11B.1.1.3550.015385
ORF1ab/nsp31558P1558PccGccA11B.1.3970.004854
ORF1ab/nsp31558P1558PccGccA11B.1.4040.001302
ORF1ab/nsp31558P1558PccGccA11B.1.416.10.001563
ORF1ab/nsp31558P1558PccGccA11B.1.5040.03125
ORF1ab/nsp31558P1558PccGccA11B.1.5050.004386
ORF1ab/nsp31558P1558PccGccA11B.1.5250.000113
ORF1ab/nsp31558P1558PccGccA11B.1.5610.000397
ORF1ab/nsp31558P1558PccGccA11B.1.6270.00202
ORF1ab/nsp31558P1558PccGccA11C.160.00106
ORF1ab/nsp31558P1558PccGccA11P.1.100.000269

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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