CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1558 | P1558P | P2376P | syn | ccG | ccA | 27568 | 1178 | 0.0427307 | 7391-7393 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1178 | 27568 | All | 0.000225 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 206 | 2151 | AY.4 | 0.000321 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 139 | 1944 | B.1.1.7 | 0.000124 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 26 | 1300 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 16 | 1129 | AY.43 | 0.000071 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 538 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 99 | 343 | AY.25 | 0.000595 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 155 | 272 | B.1.2 | 0.001365 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 22 | 216 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 51 | 160 | P.1 | 0.000803 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 11 | 143 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 34 | 142 | AY.103 | 0.000211 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 14 | 117 | B.1 | 0.000128 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 108 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 101 | AY.3 | 0.000179 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 100 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 97 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 19 | 89 | B.1.177 | 0.00025 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 12 | 83 | B.1.1 | 0.000218 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 66 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 63 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 59 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 57 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 50 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 47 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 8 | 46 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 40 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 8 | 39 | B.1.526 | 0.000188 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 31 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 12 | 31 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 15 | 29 | P.1.14 | 0.000717 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 27 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 26 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 25 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 24 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 24 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 23 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 22 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 6 | 22 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 22 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 6 | 22 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 22 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 20 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 19 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 19 | B.1.36.18 | 0.007563 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 18 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 16 | 18 | AY.39.1 | 0.000634 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 18 | B.1.1.343 | 0.375 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 18 | B.1.631 | 0.060606 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 17 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 9 | 17 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 6 | 16 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 12 | 16 | B.1.177.86 | 0.002201 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 14 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 13 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 12 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 7 | 11 | AY.46.5 | 0.001389 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 3 | 11 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 10 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 10 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 10 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 9 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 8 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 8 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 7 | 7 | B.1.1.176 | 0.003076 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 7 | 7 | B.1.1.232 | 0.012704 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 3 | 7 | B.1.241 | 0.002435 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 6 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 3 | 6 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 6 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 5 | B.1.1.67 | 0.022831 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 5 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 4 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | P.1.10 | 0.000269 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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