CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1558 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31558P1558PP2376PsynccGccA2756811780.04273077391-7393

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31558P1558PccGccA117827568All0.000225
ORF1ab/nsp31558P1558PccGccA2062151AY.40.000321
ORF1ab/nsp31558P1558PccGccA1391944B.1.1.70.000124
ORF1ab/nsp31558P1558PccGccA261300B.1.617.20.000098
ORF1ab/nsp31558P1558PccGccA161129AY.430.000071
ORF1ab/nsp31558P1558PccGccA2538AY.4.20.000043
ORF1ab/nsp31558P1558PccGccA99343AY.250.000595
ORF1ab/nsp31558P1558PccGccA155272B.1.20.001365
ORF1ab/nsp31558P1558PccGccA22216AY.440.000134
ORF1ab/nsp31558P1558PccGccA51160P.10.000803
ORF1ab/nsp31558P1558PccGccA11143B.1.1600.000343
ORF1ab/nsp31558P1558PccGccA34142AY.1030.000211
ORF1ab/nsp31558P1558PccGccA14117B.10.000128
ORF1ab/nsp31558P1558PccGccA2108AY.50.000041
ORF1ab/nsp31558P1558PccGccA18101AY.30.000179
ORF1ab/nsp31558P1558PccGccA2100B.1.2430.000139
ORF1ab/nsp31558P1558PccGccA597AY.1020.000133
ORF1ab/nsp31558P1558PccGccA1989B.1.1770.00025
ORF1ab/nsp31558P1558PccGccA1283B.1.10.000218
ORF1ab/nsp31558P1558PccGccA566AY.200.000194
ORF1ab/nsp31558P1558PccGccA163AZ.20.000821
ORF1ab/nsp31558P1558PccGccA1859AY.390.000445
ORF1ab/nsp31558P1558PccGccA557AY.1000.00023
ORF1ab/nsp31558P1558PccGccA450AY.260.000113
ORF1ab/nsp31558P1558PccGccA147AY.60.000041
ORF1ab/nsp31558P1558PccGccA846B.1.4290.000188
ORF1ab/nsp31558P1558PccGccA140AY.75.10.00018
ORF1ab/nsp31558P1558PccGccA839B.1.5260.000188
ORF1ab/nsp31558P1558PccGccA131AY.470.000031
ORF1ab/nsp31558P1558PccGccA1231C.370.001393
ORF1ab/nsp31558P1558PccGccA1529P.1.140.000717
ORF1ab/nsp31558P1558PccGccA427B.1.6210.000354
ORF1ab/nsp31558P1558PccGccA226AY.330.000134
ORF1ab/nsp31558P1558PccGccA425AY.1200.000149
ORF1ab/nsp31558P1558PccGccA124B.1.1.5190.00004
ORF1ab/nsp31558P1558PccGccA124B.1.3510.00003
ORF1ab/nsp31558P1558PccGccA123AY.420.00004
ORF1ab/nsp31558P1558PccGccA222AY.340.000194
ORF1ab/nsp31558P1558PccGccA622B.1.1.2220.001224
ORF1ab/nsp31558P1558PccGccA122B.1.3200.001245
ORF1ab/nsp31558P1558PccGccA622B.1.360.000875
ORF1ab/nsp31558P1558PccGccA222P.1.150.000465
ORF1ab/nsp31558P1558PccGccA120AY.460.000104
ORF1ab/nsp31558P1558PccGccA1819B.1.2210.001279
ORF1ab/nsp31558P1558PccGccA1819B.1.36.180.007563
ORF1ab/nsp31558P1558PccGccA518AY.290.000079
ORF1ab/nsp31558P1558PccGccA1618AY.39.10.000634
ORF1ab/nsp31558P1558PccGccA1818B.1.1.3430.375
ORF1ab/nsp31558P1558PccGccA1818B.1.6310.060606
ORF1ab/nsp31558P1558PccGccA117AY.840.000437
ORF1ab/nsp31558P1558PccGccA917B.1.4270.000454
ORF1ab/nsp31558P1558PccGccA616AY.1190.000212
ORF1ab/nsp31558P1558PccGccA1216B.1.177.860.002201
ORF1ab/nsp31558P1558PccGccA514AY.650.002665
ORF1ab/nsp31558P1558PccGccA113AY.46.60.000072
ORF1ab/nsp31558P1558PccGccA212AY.1060.00067
ORF1ab/nsp31558P1558PccGccA711AY.46.50.001389
ORF1ab/nsp31558P1558PccGccA311B.1.5960.000261
ORF1ab/nsp31558P1558PccGccA110AY.980.000079
ORF1ab/nsp31558P1558PccGccA210B.1.1.2160.001781
ORF1ab/nsp31558P1558PccGccA110P.1.20.001156
ORF1ab/nsp31558P1558PccGccA19AY.9.20.000037
ORF1ab/nsp31558P1558PccGccA48AY.700.000834
ORF1ab/nsp31558P1558PccGccA58B.1.1.280.001556
ORF1ab/nsp31558P1558PccGccA77B.1.1.1760.003076
ORF1ab/nsp31558P1558PccGccA77B.1.1.2320.012704
ORF1ab/nsp31558P1558PccGccA37B.1.2410.002435
ORF1ab/nsp31558P1558PccGccA26AY.1100.000225
ORF1ab/nsp31558P1558PccGccA36AY.160.001139
ORF1ab/nsp31558P1558PccGccA26B.1.177.430.002954
ORF1ab/nsp31558P1558PccGccA15AY.1110.000183
ORF1ab/nsp31558P1558PccGccA15AY.1130.000142
ORF1ab/nsp31558P1558PccGccA55B.1.1.670.022831
ORF1ab/nsp31558P1558PccGccA25B.1.2580.000133
ORF1ab/nsp31558P1558PccGccA15P.1.70.000319
ORF1ab/nsp31558P1558PccGccA15Q.30.000145
ORF1ab/nsp31558P1558PccGccA14A.2.50.000499
ORF1ab/nsp31558P1558PccGccA14AY.950.000761
ORF1ab/nsp31558P1558PccGccA14B.1.1.250.000569
ORF1ab/nsp31558P1558PccGccA14B.1.1.2940.001266
ORF1ab/nsp31558P1558PccGccA44B.1.36.310.007005
ORF1ab/nsp31558P1558PccGccA24B.1.4000.000858
ORF1ab/nsp31558P1558PccGccA14Q.80.000165
ORF1ab/nsp31558P1558PccGccA230.111111
ORF1ab/nsp31558P1558PccGccA13B.1.1.2840.000107
ORF1ab/nsp31558P1558PccGccA13B.1.177.210.000076
ORF1ab/nsp31558P1558PccGccA23B.1.177.820.000955
ORF1ab/nsp31558P1558PccGccA13B.1.466.20.000391
ORF1ab/nsp31558P1558PccGccA23B.1.621.10.001012
ORF1ab/nsp31558P1558PccGccA13P.1.120.000484
ORF1ab/nsp31558P1558PccGccA23P.1.170.000324
ORF1ab/nsp31558P1558PccGccA12AY.120.000316
ORF1ab/nsp31558P1558PccGccA12AY.530.000288
ORF1ab/nsp31558P1558PccGccA12AY.590.00053
ORF1ab/nsp31558P1558PccGccA12AY.850.000427
ORF1ab/nsp31558P1558PccGccA22B.1.177.770.001452
ORF1ab/nsp31558P1558PccGccA12B.1.5090.000866
ORF1ab/nsp31558P1558PccGccA12C.10.002392
ORF1ab/nsp31558P1558PccGccA12R.10.00009
ORF1ab/nsp31558P1558PccGccA11AY.320.000532
ORF1ab/nsp31558P1558PccGccA11B.1.1.100.001115
ORF1ab/nsp31558P1558PccGccA11B.1.1.2200.001859
ORF1ab/nsp31558P1558PccGccA11B.1.1.3040.002809
ORF1ab/nsp31558P1558PccGccA11B.1.1.3550.015385
ORF1ab/nsp31558P1558PccGccA11B.1.3970.004854
ORF1ab/nsp31558P1558PccGccA11B.1.4040.001302
ORF1ab/nsp31558P1558PccGccA11B.1.416.10.001563
ORF1ab/nsp31558P1558PccGccA11B.1.5040.03125
ORF1ab/nsp31558P1558PccGccA11B.1.5050.004386
ORF1ab/nsp31558P1558PccGccA11B.1.5250.000113
ORF1ab/nsp31558P1558PccGccA11B.1.5610.000397
ORF1ab/nsp31558P1558PccGccA11B.1.6270.00202
ORF1ab/nsp31558P1558PccGccA11C.160.00106
ORF1ab/nsp31558P1558PccGccA11P.1.100.000269