CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1558

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31558P1558PP2376PsynccGccT27568261250.9476577391-7393
ORF1ab/nsp31558P1558PP2376PsynccGccA2756811780.04273077391-7393
ORF1ab/nsp31558P1558PP2376PsynccGccC275682650.009612597391-7393
ORF1ab/nsp31558P1558LP2376LnonsyncCgcTg3793780.9973617391-7393
ORF1ab/nsp31558P1558LP2376LnonsyncCGcTC37910.002638527391-7393
ORF1ab/nsp31558P1558SP2376SnonsynCcgTcg12312317391-7393
ORF1ab/nsp31558P1558delP2376deldelCCG---939317391-7393
ORF1ab/nsp31558P1558QP2376QnonsyncCgcAg515117391-7393
ORF1ab/nsp31558P1558RP2376RnonsyncCgcGg181817391-7393
ORF1ab/nsp31558P1558del1P2376del1delccGcc-530.67391-7393
ORF1ab/nsp31558P1558del1P2376del1delCcg-cg520.47391-7393
ORF1ab/nsp31558P1558TP2376TnonsynCcgAcg4417391-7393
ORF1ab/nsp31558P1558AP2376AnonsynCcgGcg4417391-7393
ORF1ab/nsp31558P1558del2P2376del2delCCg--g430.757391-7393
ORF1ab/nsp31558P1558del2P2376del2delCCG--C410.257391-7393
ORF1ab/nsp31558P1558KP2376KnonsynCCgAAg2217391-7393

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31558P1558PccGccT2612527568All0.004997
ORF1ab/nsp31558P1558PccGccA117827568All0.000225
ORF1ab/nsp31558P1558PccGccC26527568All0.000051
ORF1ab/nsp31558P1558PccGccT1536315364AY.750.860672
ORF1ab/nsp31558P1558PccGccC115364AY.750.000056
ORF1ab/nsp31558P1558PccGccT19392151AY.40.003018
ORF1ab/nsp31558P1558PccGccA2062151AY.40.000321
ORF1ab/nsp31558P1558PccGccC62151AY.40.000009
ORF1ab/nsp31558P1558PccGccT17071944B.1.1.70.001528
ORF1ab/nsp31558P1558PccGccA1391944B.1.1.70.000124
ORF1ab/nsp31558P1558PccGccC981944B.1.1.70.000088
ORF1ab/nsp31558P1558PccGccT12601300B.1.617.20.004744
ORF1ab/nsp31558P1558PccGccA261300B.1.617.20.000098
ORF1ab/nsp31558P1558PccGccC141300B.1.617.20.000053
ORF1ab/nsp31558P1558PccGccT11101129AY.430.004918
ORF1ab/nsp31558P1558PccGccA161129AY.430.000071
ORF1ab/nsp31558P1558PccGccC31129AY.430.000013
ORF1ab/nsp31558P1558PccGccT536538AY.4.20.011625
ORF1ab/nsp31558P1558PccGccA2538AY.4.20.000043
ORF1ab/nsp31558P1558LcCgcTg378379All0.000072
ORF1ab/nsp31558P1558LcCGcTC1379All0
ORF1ab/nsp31558P1558PccGccT230343AY.250.001383
ORF1ab/nsp31558P1558PccGccA99343AY.250.000595
ORF1ab/nsp31558P1558PccGccC14343AY.250.000084
ORF1ab/nsp31558P1558PccGccA155272B.1.20.001365
ORF1ab/nsp31558P1558PccGccT117272B.1.20.00103
ORF1ab/nsp31558P1558PccGccT192216AY.440.001169
ORF1ab/nsp31558P1558PccGccA22216AY.440.000134
ORF1ab/nsp31558P1558PccGccC2216AY.440.000012
ORF1ab/nsp31558P1558PccGccT211211B.1.362.20.995283
ORF1ab/nsp31558P1558PccGccT184184B.1.1.2040.559271
ORF1ab/nsp31558P1558PccGccT104160P.10.001638
ORF1ab/nsp31558P1558PccGccA51160P.10.000803
ORF1ab/nsp31558P1558PccGccC5160P.10.000079
ORF1ab/nsp31558P1558PccGccT132143B.1.1600.004117
ORF1ab/nsp31558P1558PccGccA11143B.1.1600.000343
ORF1ab/nsp31558P1558PccGccT107142AY.1030.000664
ORF1ab/nsp31558P1558PccGccA34142AY.1030.000211
ORF1ab/nsp31558P1558PccGccC1142AY.1030.000006
ORF1ab/nsp31558P1558SCcgTcg123123All0.000024
ORF1ab/nsp31558P1558PccGccT102117B.10.000934
ORF1ab/nsp31558P1558PccGccA14117B.10.000128
ORF1ab/nsp31558P1558PccGccC1117B.10.000009
ORF1ab/nsp31558P1558PccGccT106108AY.50.002189
ORF1ab/nsp31558P1558PccGccA2108AY.50.000041
ORF1ab/nsp31558P1558PccGccT83101AY.30.000826
ORF1ab/nsp31558P1558PccGccA18101AY.30.000179
ORF1ab/nsp31558P1558PccGccT98100B.1.2430.006819
ORF1ab/nsp31558P1558PccGccA2100B.1.2430.000139
ORF1ab/nsp31558P1558PccGccT9297AY.1020.002439
ORF1ab/nsp31558P1558PccGccA597AY.1020.000133
ORF1ab/nsp31558P1558delCCG---9393All0.000018
ORF1ab/nsp31558P1558PccGccT6989B.1.1770.000909
ORF1ab/nsp31558P1558PccGccA1989B.1.1770.00025
ORF1ab/nsp31558P1558PccGccC189B.1.1770.000013
ORF1ab/nsp31558P1558PccGccT6983B.1.10.001252
ORF1ab/nsp31558P1558PccGccA1283B.1.10.000218
ORF1ab/nsp31558P1558PccGccC283B.1.10.000036
ORF1ab/nsp31558P1558LcCgcTg7171B.1.3510.002111
ORF1ab/nsp31558P1558LcCgcTg6868B.1.1.70.000061
ORF1ab/nsp31558P1558PccGccT6767B.1.1.2910.04974
ORF1ab/nsp31558P1558PccGccT6066AY.200.002332
ORF1ab/nsp31558P1558PccGccA566AY.200.000194
ORF1ab/nsp31558P1558PccGccC166AY.200.000039
ORF1ab/nsp31558P1558PccGccC5863AZ.20.047619
ORF1ab/nsp31558P1558PccGccT463AZ.20.003284
ORF1ab/nsp31558P1558PccGccA163AZ.20.000821
ORF1ab/nsp31558P1558PccGccT6161AY.90.004123
ORF1ab/nsp31558P1558PccGccT4159AY.390.001013
ORF1ab/nsp31558P1558PccGccA1859AY.390.000445
ORF1ab/nsp31558P1558PccGccT5959B.1.6020.385621
ORF1ab/nsp31558P1558PccGccT5257AY.1000.002392
ORF1ab/nsp31558P1558PccGccA557AY.1000.00023
ORF1ab/nsp31558P1558SCcgTcg5757AY.40.000089
ORF1ab/nsp31558P1558PccGccT5454AY.710.025653
ORF1ab/nsp31558P1558QcCgcAg5151All0.00001
ORF1ab/nsp31558P1558PccGccT4650AY.260.001302
ORF1ab/nsp31558P1558PccGccA450AY.260.000113
ORF1ab/nsp31558P1558PccGccT5050AY.99.20.004608
ORF1ab/nsp31558P1558PccGccT4547AY.60.001851
ORF1ab/nsp31558P1558PccGccA147AY.60.000041
ORF1ab/nsp31558P1558PccGccC147AY.60.000041
ORF1ab/nsp31558P1558PccGccT3646B.1.4290.000847
ORF1ab/nsp31558P1558PccGccA846B.1.4290.000188
ORF1ab/nsp31558P1558PccGccC246B.1.4290.000047
ORF1ab/nsp31558P1558PccGccT4343B.1.5970.199074
ORF1ab/nsp31558P1558PccGccT4343P.20.008025
ORF1ab/nsp31558P1558PccGccT3840AY.75.10.006852
ORF1ab/nsp31558P1558PccGccA140AY.75.10.00018
ORF1ab/nsp31558P1558PccGccC140AY.75.10.00018
ORF1ab/nsp31558P1558PccGccT2639B.1.5260.000611
ORF1ab/nsp31558P1558PccGccA839B.1.5260.000188
ORF1ab/nsp31558P1558PccGccC539B.1.5260.000118
ORF1ab/nsp31558P1558PccGccT2636AY.360.003854
ORF1ab/nsp31558P1558PccGccC1036AY.360.001482
ORF1ab/nsp31558P1558delCCG---3636B.1.1.70.000032
ORF1ab/nsp31558P1558PccGccT3434B.1.4160.043147
ORF1ab/nsp31558P1558LcCgcTg3333B.10.000302
ORF1ab/nsp31558P1558PccGccT3232AY.1180.002005
ORF1ab/nsp31558P1558PccGccT3232AY.230.002232
ORF1ab/nsp31558P1558PccGccT3031AY.470.000933
ORF1ab/nsp31558P1558PccGccA131AY.470.000031
ORF1ab/nsp31558P1558PccGccT3131B.1.1.3170.012762
ORF1ab/nsp31558P1558PccGccT1931C.370.002205
ORF1ab/nsp31558P1558PccGccA1231C.370.001393
ORF1ab/nsp31558P1558PccGccT2930B.1.1.2140.001608
ORF1ab/nsp31558P1558PccGccC130B.1.1.2140.000055
ORF1ab/nsp31558P1558PccGccA1529P.1.140.000717
ORF1ab/nsp31558P1558PccGccT1329P.1.140.000621
ORF1ab/nsp31558P1558PccGccC129P.1.140.000048
ORF1ab/nsp31558P1558PccGccT2828AY.1170.002366
ORF1ab/nsp31558P1558PccGccT2727B.1.1460.114407
ORF1ab/nsp31558P1558PccGccT2327B.1.6210.002036
ORF1ab/nsp31558P1558PccGccA427B.1.6210.000354
ORF1ab/nsp31558P1558PccGccT2326AY.330.001536
ORF1ab/nsp31558P1558PccGccA226AY.330.000134
ORF1ab/nsp31558P1558PccGccC126AY.330.000067
ORF1ab/nsp31558P1558PccGccT2626B.1.588.11
ORF1ab/nsp31558P1558PccGccT2125AY.1200.000781
ORF1ab/nsp31558P1558PccGccA425AY.1200.000149
ORF1ab/nsp31558P1558QcCgcAg2525AY.260.000708
ORF1ab/nsp31558P1558PccGccT2324B.1.1.5190.000913
ORF1ab/nsp31558P1558PccGccA124B.1.1.5190.00004
ORF1ab/nsp31558P1558PccGccT2124B.1.3510.000624
ORF1ab/nsp31558P1558PccGccC224B.1.3510.000059
ORF1ab/nsp31558P1558PccGccA124B.1.3510.00003
ORF1ab/nsp31558P1558PccGccT2424C.360.021858
ORF1ab/nsp31558P1558PccGccT2023AY.420.000805
ORF1ab/nsp31558P1558PccGccC223AY.420.00008
ORF1ab/nsp31558P1558PccGccA123AY.420.00004
ORF1ab/nsp31558P1558PccGccT2022AY.340.001939
ORF1ab/nsp31558P1558PccGccA222AY.340.000194
ORF1ab/nsp31558P1558PccGccT1522B.1.1.2220.00306
ORF1ab/nsp31558P1558PccGccA622B.1.1.2220.001224
ORF1ab/nsp31558P1558PccGccC122B.1.1.2220.000204
ORF1ab/nsp31558P1558PccGccT2122B.1.3200.026152
ORF1ab/nsp31558P1558PccGccA122B.1.3200.001245
ORF1ab/nsp31558P1558PccGccT1522B.1.360.002189
ORF1ab/nsp31558P1558PccGccA622B.1.360.000875
ORF1ab/nsp31558P1558PccGccC122B.1.360.000146
ORF1ab/nsp31558P1558PccGccT2022P.1.150.004647
ORF1ab/nsp31558P1558PccGccA222P.1.150.000465
ORF1ab/nsp31558P1558PccGccT2121AY.3.10.00179
ORF1ab/nsp31558P1558PccGccT1920AY.460.001978
ORF1ab/nsp31558P1558PccGccA120AY.460.000104
ORF1ab/nsp31558P1558LcCgcTg2020B.1.1600.000624
ORF1ab/nsp31558P1558PccGccT2020B.330.425532
ORF1ab/nsp31558P1558PccGccT1919AY.4.50.002042
ORF1ab/nsp31558P1558PccGccT1919AY.620.008279
ORF1ab/nsp31558P1558PccGccA1819B.1.2210.001279
ORF1ab/nsp31558P1558PccGccT119B.1.2210.000071
ORF1ab/nsp31558P1558PccGccA1819B.1.36.180.007563
ORF1ab/nsp31558P1558PccGccT119B.1.36.180.00042
ORF1ab/nsp31558P1558PccGccT1919B.1.6370.001388
ORF1ab/nsp31558P1558RcCgcGg1818All0.000003
ORF1ab/nsp31558P1558PccGccT1218AY.290.000189
ORF1ab/nsp31558P1558PccGccA518AY.290.000079
ORF1ab/nsp31558P1558PccGccC118AY.290.000016
ORF1ab/nsp31558P1558PccGccA1618AY.39.10.000634
ORF1ab/nsp31558P1558PccGccT218AY.39.10.000079
ORF1ab/nsp31558P1558PccGccA1818B.1.1.3430.375
ORF1ab/nsp31558P1558PccGccT1818B.1.1.500.01222
ORF1ab/nsp31558P1558PccGccA1818B.1.6310.060606
ORF1ab/nsp31558P1558PccGccT1617AY.840.006999
ORF1ab/nsp31558P1558PccGccA117AY.840.000437
ORF1ab/nsp31558P1558PccGccA917B.1.4270.000454
ORF1ab/nsp31558P1558PccGccT817B.1.4270.000404
ORF1ab/nsp31558P1558PccGccT916AY.1190.000318
ORF1ab/nsp31558P1558PccGccA616AY.1190.000212
ORF1ab/nsp31558P1558PccGccC116AY.1190.000035
ORF1ab/nsp31558P1558PccGccA1216B.1.177.860.002201
ORF1ab/nsp31558P1558PccGccT416B.1.177.860.000734
ORF1ab/nsp31558P1558PccGccT1515B.1.177.170.012315
ORF1ab/nsp31558P1558PccGccT914AY.650.004797
ORF1ab/nsp31558P1558PccGccA514AY.650.002665
ORF1ab/nsp31558P1558PccGccT1414B.1.1.330.005892
ORF1ab/nsp31558P1558PccGccT1213AY.46.60.000866
ORF1ab/nsp31558P1558PccGccA113AY.46.60.000072
ORF1ab/nsp31558P1558PccGccT1313AY.610.001362
ORF1ab/nsp31558P1558PccGccT1313B.1.2390.015873
ORF1ab/nsp31558P1558LcCgcTg1313B.1.466.20.005086
ORF1ab/nsp31558P1558PccGccT1012AY.1060.003349
ORF1ab/nsp31558P1558PccGccA212AY.1060.00067
ORF1ab/nsp31558P1558SCcgTcg1212B.1.20.000106
ORF1ab/nsp31558P1558PccGccT1212B.1.351.50.007194
ORF1ab/nsp31558P1558PccGccT1111AE.80.005379
ORF1ab/nsp31558P1558LcCgcTg1111AY.1200.000409
ORF1ab/nsp31558P1558PccGccT1011AY.130.00161
ORF1ab/nsp31558P1558PccGccC111AY.130.000161
ORF1ab/nsp31558P1558PccGccT1111AY.370.003477
ORF1ab/nsp31558P1558PccGccA711AY.46.50.001389
ORF1ab/nsp31558P1558PccGccT411AY.46.50.000794
ORF1ab/nsp31558P1558PccGccT1011B0.001278
ORF1ab/nsp31558P1558PccGccC111B0.000128
ORF1ab/nsp31558P1558LcCgcTg1111B.1.20.000097
ORF1ab/nsp31558P1558PccGccT1111B.1.438.10.00118
ORF1ab/nsp31558P1558PccGccT1111B.1.4780.129412
ORF1ab/nsp31558P1558PccGccT811B.1.5960.000697
ORF1ab/nsp31558P1558PccGccA311B.1.5960.000261
ORF1ab/nsp31558P1558PccGccT1111B.1.6200.010407
ORF1ab/nsp31558P1558PccGccT1111Q.10.00139
ORF1ab/nsp31558P1558LcCgcTg1010A.23.10.007042
ORF1ab/nsp31558P1558PccGccT1010AY.1210.001353
ORF1ab/nsp31558P1558PccGccT1010AY.670.004643
ORF1ab/nsp31558P1558PccGccC510AY.980.000395
ORF1ab/nsp31558P1558PccGccT410AY.980.000316
ORF1ab/nsp31558P1558PccGccA110AY.980.000079
ORF1ab/nsp31558P1558LcCgcTg1010B.1.10.000181
ORF1ab/nsp31558P1558PccGccT810B.1.1.2160.007124
ORF1ab/nsp31558P1558PccGccA210B.1.1.2160.001781
ORF1ab/nsp31558P1558PccGccT1010B.1.258.170.00104
ORF1ab/nsp31558P1558PccGccT1010B.1.6090.004794
ORF1ab/nsp31558P1558PccGccT910P.1.20.010405
ORF1ab/nsp31558P1558PccGccA110P.1.20.001156
ORF1ab/nsp31558P1558PccGccT99A.280.02381
ORF1ab/nsp31558P1558PccGccT99AY.510.008182
ORF1ab/nsp31558P1558PccGccT89AY.9.20.000294
ORF1ab/nsp31558P1558PccGccA19AY.9.20.000037
ORF1ab/nsp31558P1558PccGccT99AY.98.10.000436
ORF1ab/nsp31558P1558RcCgcGg99B.1.1.70.000008
ORF1ab/nsp31558P1558PccGccT88AY.270.000518
ORF1ab/nsp31558P1558PccGccT88AY.550.007339
ORF1ab/nsp31558P1558PccGccT48AY.700.000834
ORF1ab/nsp31558P1558PccGccA48AY.700.000834
ORF1ab/nsp31558P1558PccGccT88AY.930.002185
ORF1ab/nsp31558P1558PccGccT88B.1.1.2250.057554
ORF1ab/nsp31558P1558PccGccA58B.1.1.280.001556
ORF1ab/nsp31558P1558PccGccT38B.1.1.280.000934
ORF1ab/nsp31558P1558PccGccT88B.1.214.20.004796
ORF1ab/nsp31558P1558PccGccT88B.1.617.10.001032
ORF1ab/nsp31558P1558LcCgcTg88B.1.617.20.00003
ORF1ab/nsp31558P1558PccGccT88N.50.014134
ORF1ab/nsp31558P1558LcCgcTg88P.10.000126
ORF1ab/nsp31558P1558QcCgcAg77AY.1030.000043
ORF1ab/nsp31558P1558LcCgcTg77AY.40.000011
ORF1ab/nsp31558P1558PccGccT77AY.500.005596
ORF1ab/nsp31558P1558PccGccT77AY.540.000667
ORF1ab/nsp31558P1558PccGccT77AY.7.10.000789
ORF1ab/nsp31558P1558PccGccT77AY.9.10.000586
ORF1ab/nsp31558P1558PccGccT77AY.920.002011
ORF1ab/nsp31558P1558delCCG---77B.10.000064
ORF1ab/nsp31558P1558PccGccA77B.1.1.1760.003076
ORF1ab/nsp31558P1558PccGccA77B.1.1.2320.012704
ORF1ab/nsp31558P1558PccGccT77B.1.1.630.002701
ORF1ab/nsp31558P1558SCcgTcg77B.1.1.70.000006
ORF1ab/nsp31558P1558PccGccT47B.1.2410.003247
ORF1ab/nsp31558P1558PccGccA37B.1.2410.002435
ORF1ab/nsp31558P1558PccGccT77B.400.00255
ORF1ab/nsp31558P1558PccGccT77C.180.018135
ORF1ab/nsp31558P1558LcCgcTg77R.10.00063
ORF1ab/nsp31558P1558PccGccT36AY.1100.000338
ORF1ab/nsp31558P1558PccGccA26AY.1100.000225
ORF1ab/nsp31558P1558PccGccC16AY.1100.000113
ORF1ab/nsp31558P1558PccGccT36AY.160.001139
ORF1ab/nsp31558P1558PccGccA36AY.160.001139
ORF1ab/nsp31558P1558PccGccT66AY.16.10.00282
ORF1ab/nsp31558P1558PccGccT66AY.34.10.00306
ORF1ab/nsp31558P1558LcCgcTg66AY.440.000037
ORF1ab/nsp31558P1558PccGccT66AY.520.004886
ORF1ab/nsp31558P1558PccGccT66AY.70.001176
ORF1ab/nsp31558P1558PccGccT66B.1.177.320.008097
ORF1ab/nsp31558P1558PccGccT46B.1.177.430.005908
ORF1ab/nsp31558P1558PccGccA26B.1.177.430.002954
ORF1ab/nsp31558P1558PccGccT66B.1.177.600.001311
ORF1ab/nsp31558P1558PccGccT66B.1.177.870.004367
ORF1ab/nsp31558P1558PccGccT66B.1.3910.006764
ORF1ab/nsp31558P1558RcCgcGg66B.1.5250.000679
ORF1ab/nsp31558P1558QcCgcAg66B.1.617.20.000023
ORF1ab/nsp31558P1558PccGccT66B.1.6280.002114
ORF1ab/nsp31558P1558del1ccGcc-35All0.000001
ORF1ab/nsp31558P1558del1Ccg-cg25All0
ORF1ab/nsp31558P1558PccGccT45AY.1110.000733
ORF1ab/nsp31558P1558PccGccA15AY.1110.000183
ORF1ab/nsp31558P1558PccGccT45AY.1130.00057
ORF1ab/nsp31558P1558PccGccA15AY.1130.000142
ORF1ab/nsp31558P1558PccGccT55AY.20.001781
ORF1ab/nsp31558P1558PccGccT55AY.380.002496
ORF1ab/nsp31558P1558delCCG---55AY.40.000008
ORF1ab/nsp31558P1558PccGccT55AY.450.000608
ORF1ab/nsp31558P1558PccGccT55AY.580.004537
ORF1ab/nsp31558P1558LcCgcTg55B.1.1.280.001556
ORF1ab/nsp31558P1558PccGccC45B.1.1.3480.003185
ORF1ab/nsp31558P1558PccGccT15B.1.1.3480.000796
ORF1ab/nsp31558P1558PccGccT55B.1.1.4660.043478
ORF1ab/nsp31558P1558PccGccA55B.1.1.670.022831
ORF1ab/nsp31558P1558PccGccT55B.1.1110.005875
ORF1ab/nsp31558P1558PccGccT55B.1.1530.09434
ORF1ab/nsp31558P1558PccGccT55B.1.177.440.002595
ORF1ab/nsp31558P1558PccGccT55B.1.2320.002687
ORF1ab/nsp31558P1558PccGccT55B.1.2340.00066
ORF1ab/nsp31558P1558PccGccT55B.1.2400.001078
ORF1ab/nsp31558P1558PccGccA25B.1.2580.000133
ORF1ab/nsp31558P1558PccGccT25B.1.2580.000133
ORF1ab/nsp31558P1558PccGccC15B.1.2580.000067
ORF1ab/nsp31558P1558PccGccC45C.36.30.002269
ORF1ab/nsp31558P1558PccGccT15C.36.30.000567
ORF1ab/nsp31558P1558PccGccT45P.1.70.001277
ORF1ab/nsp31558P1558PccGccA15P.1.70.000319
ORF1ab/nsp31558P1558PccGccT45Q.30.00058
ORF1ab/nsp31558P1558PccGccA15Q.30.000145
ORF1ab/nsp31558P1558PccGccT34A.2.50.001497
ORF1ab/nsp31558P1558PccGccA14A.2.50.000499
ORF1ab/nsp31558P1558ACcgGcg44All0.000001
ORF1ab/nsp31558P1558TCcgAcg44All0.000001
ORF1ab/nsp31558P1558del2CCg--g34All0.000001
ORF1ab/nsp31558P1558del2CCG--C14All0
ORF1ab/nsp31558P1558LcCgcTg44AY.1150.020833
ORF1ab/nsp31558P1558QcCgcAg44AY.340.000388
ORF1ab/nsp31558P1558QcCgcAg44AY.40.000006
ORF1ab/nsp31558P1558PccGccT44AY.4.40.001637
ORF1ab/nsp31558P1558PccGccT44AY.5.40.001107
ORF1ab/nsp31558P1558PccGccT44AY.690.000747
ORF1ab/nsp31558P1558PccGccT44AY.740.000463
ORF1ab/nsp31558P1558PccGccT34AY.950.002283
ORF1ab/nsp31558P1558PccGccA14AY.950.000761
ORF1ab/nsp31558P1558PccGccT34B.1.1.250.001706
ORF1ab/nsp31558P1558PccGccA14B.1.1.250.000569
ORF1ab/nsp31558P1558PccGccT44B.1.1.2530.010025
ORF1ab/nsp31558P1558PccGccT34B.1.1.2940.003797
ORF1ab/nsp31558P1558PccGccA14B.1.1.2940.001266
ORF1ab/nsp31558P1558LcCgcTg44B.1.1.3480.003185
ORF1ab/nsp31558P1558PccGccT44B.1.1.4480.00813
ORF1ab/nsp31558P1558PccGccT44B.1.1.540.012085
ORF1ab/nsp31558P1558LcCgcTg44B.1.36.160.005698
ORF1ab/nsp31558P1558PccGccT44B.1.36.170.001976
ORF1ab/nsp31558P1558PccGccA44B.1.36.310.007005
ORF1ab/nsp31558P1558PccGccT24B.1.4000.000858
ORF1ab/nsp31558P1558PccGccA24B.1.4000.000858
ORF1ab/nsp31558P1558LcCgcTg44B.60.00364
ORF1ab/nsp31558P1558PccGccT44D.20.0003
ORF1ab/nsp31558P1558PccGccC44Q.40.001819
ORF1ab/nsp31558P1558PccGccT34Q.80.000495
ORF1ab/nsp31558P1558PccGccA14Q.80.000165
ORF1ab/nsp31558P1558PccGccA230.111111
ORF1ab/nsp31558P1558PccGccC130.055556
ORF1ab/nsp31558P1558PccGccT33AY.10.001187
ORF1ab/nsp31558P1558PccGccT33AY.100.00159
ORF1ab/nsp31558P1558SCcgTcg33AY.1000.000138
ORF1ab/nsp31558P1558PccGccT33AY.140.000264
ORF1ab/nsp31558P1558PccGccT33AY.240.001293
ORF1ab/nsp31558P1558LcCgcTg33AY.260.000085
ORF1ab/nsp31558P1558PccGccT33AY.300.001187
ORF1ab/nsp31558P1558LcCgcTg33AY.430.000013
ORF1ab/nsp31558P1558PccGccT33AY.46.10.00308
ORF1ab/nsp31558P1558SCcgTcg33AY.70.000588
ORF1ab/nsp31558P1558LcCgcTg33AY.960.006224
ORF1ab/nsp31558P1558PccGccT33B.1.1.1890.004539
ORF1ab/nsp31558P1558PccGccT33B.1.1.2190.015
ORF1ab/nsp31558P1558PccGccT33B.1.1.2650.009464
ORF1ab/nsp31558P1558PccGccT23B.1.1.2840.000215
ORF1ab/nsp31558P1558PccGccA13B.1.1.2840.000107
ORF1ab/nsp31558P1558PccGccT33B.1.1.3760.017857
ORF1ab/nsp31558P1558PccGccT23B.1.177.210.000153
ORF1ab/nsp31558P1558PccGccA13B.1.177.210.000076
ORF1ab/nsp31558P1558PccGccT33B.1.177.70.000495
ORF1ab/nsp31558P1558PccGccT33B.1.177.750.003122
ORF1ab/nsp31558P1558PccGccA23B.1.177.820.000955
ORF1ab/nsp31558P1558PccGccC13B.1.177.820.000477
ORF1ab/nsp31558P1558PccGccT33B.1.2360.00616
ORF1ab/nsp31558P1558PccGccT33B.1.2370.014925
ORF1ab/nsp31558P1558PccGccT33B.1.36.80.003
ORF1ab/nsp31558P1558PccGccT33B.1.3670.002377
ORF1ab/nsp31558P1558PccGccT23B.1.466.20.000782
ORF1ab/nsp31558P1558PccGccA13B.1.466.20.000391
ORF1ab/nsp31558P1558LcCgcTg33B.1.5090.002597
ORF1ab/nsp31558P1558PccGccT33B.1.5170.001281
ORF1ab/nsp31558P1558SCcgTcg33B.1.617.20.000011
ORF1ab/nsp31558P1558delCCG---33B.1.617.20.000011
ORF1ab/nsp31558P1558PccGccA23B.1.621.10.001012
ORF1ab/nsp31558P1558PccGccT13B.1.621.10.000506
ORF1ab/nsp31558P1558PccGccT33C.140.012987
ORF1ab/nsp31558P1558PccGccT33P.1.10.000953
ORF1ab/nsp31558P1558PccGccT23P.1.120.000968
ORF1ab/nsp31558P1558PccGccA13P.1.120.000484
ORF1ab/nsp31558P1558PccGccA23P.1.170.000324
ORF1ab/nsp31558P1558PccGccT13P.1.170.000162
ORF1ab/nsp31558P1558LcCGcTC120.055556
ORF1ab/nsp31558P1558LcCgcTg120.055556
ORF1ab/nsp31558P1558PccGccT22A.210.00554
ORF1ab/nsp31558P1558KCCgAAg22All0
ORF1ab/nsp31558P1558PccGccT22AY.1010.000981
ORF1ab/nsp31558P1558SCcgTcg22AY.1030.000012
ORF1ab/nsp31558P1558PccGccT22AY.1050.001286
ORF1ab/nsp31558P1558LcCgcTg22AY.1160.000574
ORF1ab/nsp31558P1558PccGccT12AY.120.000316
ORF1ab/nsp31558P1558PccGccA12AY.120.000316
ORF1ab/nsp31558P1558SCcgTcg22AY.140.000176
ORF1ab/nsp31558P1558LcCgcTg22AY.230.000139
ORF1ab/nsp31558P1558PccGccT22AY.23.10.000835
ORF1ab/nsp31558P1558delCCG---22AY.250.000012
ORF1ab/nsp31558P1558SCcgTcg22AY.250.000012
ORF1ab/nsp31558P1558SCcgTcg22AY.30.00002
ORF1ab/nsp31558P1558LcCgcTg22AY.30.00002
ORF1ab/nsp31558P1558delCCG---22AY.350.000466
ORF1ab/nsp31558P1558del1ccGcc-12AY.40.000002
ORF1ab/nsp31558P1558del1Ccg-cg12AY.40.000002
ORF1ab/nsp31558P1558PccGccT22AY.4.2.10.000298
ORF1ab/nsp31558P1558ACcgGcg22AY.4.50.000215
ORF1ab/nsp31558P1558PccGccT22AY.410.000588
ORF1ab/nsp31558P1558SCcgTcg22AY.430.000009
ORF1ab/nsp31558P1558delCCG---22AY.430.000009
ORF1ab/nsp31558P1558SCcgTcg22AY.460.000208
ORF1ab/nsp31558P1558LcCgcTg22AY.460.000208
ORF1ab/nsp31558P1558PccGccT22AY.480.00093
ORF1ab/nsp31558P1558SCcgTcg22AY.5.30.000675
ORF1ab/nsp31558P1558PccGccT22AY.5.30.000675
ORF1ab/nsp31558P1558PccGccA12AY.530.000288
ORF1ab/nsp31558P1558PccGccT12AY.530.000288
ORF1ab/nsp31558P1558PccGccT12AY.590.00053
ORF1ab/nsp31558P1558PccGccA12AY.590.00053
ORF1ab/nsp31558P1558PccGccT22AY.600.001876
ORF1ab/nsp31558P1558PccGccT22AY.730.001331
ORF1ab/nsp31558P1558delCCG---22AY.750.000112
ORF1ab/nsp31558P1558PccGccA12AY.850.000427
ORF1ab/nsp31558P1558PccGccT12AY.850.000427
ORF1ab/nsp31558P1558PccGccT22AY.990.002099
ORF1ab/nsp31558P1558PccGccT22AZ.10.001735
ORF1ab/nsp31558P1558TCcgAcg22B.10.000018
ORF1ab/nsp31558P1558QcCgcAg22B.1.10.000036
ORF1ab/nsp31558P1558LcCgcTg22B.1.1.10.000653
ORF1ab/nsp31558P1558PccGccT22B.1.1.10.000653
ORF1ab/nsp31558P1558PccGccT22B.1.1.2410.004141
ORF1ab/nsp31558P1558LcCgcTg22B.1.1.2770.001517
ORF1ab/nsp31558P1558PccGccT22B.1.1.2990.02439
ORF1ab/nsp31558P1558PccGccT22B.1.1.3060.000877
ORF1ab/nsp31558P1558SCcgTcg22B.1.1.5190.000079
ORF1ab/nsp31558P1558PccGccC22B.1.1.5230.003125
ORF1ab/nsp31558P1558PccGccT22B.1.1.570.022989
ORF1ab/nsp31558P1558PccGccT22B.1.1470.001512
ORF1ab/nsp31558P1558PccGccA22B.1.177.770.001452
ORF1ab/nsp31558P1558LcCgcTg22B.1.214.20.001199
ORF1ab/nsp31558P1558LcCgcTg22B.1.2580.000133
ORF1ab/nsp31558P1558PccGccT22B.1.3060.011429
ORF1ab/nsp31558P1558PccGccT22B.1.351.20.000605
ORF1ab/nsp31558P1558PccGccT22B.1.36.360.001204
ORF1ab/nsp31558P1558LcCgcTg22B.1.4290.000047
ORF1ab/nsp31558P1558PccGccT22B.1.4560.006536
ORF1ab/nsp31558P1558PccGccA12B.1.5090.000866
ORF1ab/nsp31558P1558PccGccT12B.1.5090.000866
ORF1ab/nsp31558P1558PccGccT22B.1.5450.028986
ORF1ab/nsp31558P1558LcCgcTg22B.1.6370.000146
ORF1ab/nsp31558P1558LcCgcTg22B.6.60.001778
ORF1ab/nsp31558P1558PccGccT12C.10.002392
ORF1ab/nsp31558P1558PccGccA12C.10.002392
ORF1ab/nsp31558P1558SCcgTcg22D.20.00015
ORF1ab/nsp31558P1558LcCgcTg22D.20.00015
ORF1ab/nsp31558P1558PccGccT22L.30.007092
ORF1ab/nsp31558P1558LcCgcTg22P.1.140.000096
ORF1ab/nsp31558P1558LcCgcTg22P.20.000373
ORF1ab/nsp31558P1558PccGccT22P.30.00319
ORF1ab/nsp31558P1558PccGccA12R.10.00009
ORF1ab/nsp31558P1558PccGccT12R.10.00009
ORF1ab/nsp31558P1558QcCgcAg11A0.000387
ORF1ab/nsp31558P1558PccGccT11A.10.000282
ORF1ab/nsp31558P1558LcCgcTg11A.190.009434
ORF1ab/nsp31558P1558LcCgcTg11A.210.00277
ORF1ab/nsp31558P1558PccGccT11A.23.10.000704
ORF1ab/nsp31558P1558SCcgTcg11A.50.001923
ORF1ab/nsp31558P1558PccGccT11AD.20.000219
ORF1ab/nsp31558P1558PccGccT11AL.10.012987
ORF1ab/nsp31558P1558LcCgcTg11AY.1020.000027
ORF1ab/nsp31558P1558SCcgTcg11AY.1020.000027
ORF1ab/nsp31558P1558delCCG---11AY.1030.000006
ORF1ab/nsp31558P1558PccGccT11AY.1040.001984
ORF1ab/nsp31558P1558PccGccT11AY.1080.001103
ORF1ab/nsp31558P1558del2CCg--g11AY.1130.000142
ORF1ab/nsp31558P1558PccGccT11AY.1160.000287
ORF1ab/nsp31558P1558PccGccT11AY.116.10.000311
ORF1ab/nsp31558P1558LcCgcTg11AY.120.000316
ORF1ab/nsp31558P1558PccGccT11AY.120.2.10.000498
ORF1ab/nsp31558P1558SCcgTcg11AY.130.000161
ORF1ab/nsp31558P1558SCcgTcg11AY.160.00038
ORF1ab/nsp31558P1558PccGccT11AY.190.00114
ORF1ab/nsp31558P1558LcCgcTg11AY.200.000039
ORF1ab/nsp31558P1558PccGccT11AY.220.002092
ORF1ab/nsp31558P1558SCcgTcg11AY.270.000065
ORF1ab/nsp31558P1558SCcgTcg11AY.290.000016
ORF1ab/nsp31558P1558PccGccA11AY.320.000532
ORF1ab/nsp31558P1558SCcgTcg11AY.330.000067
ORF1ab/nsp31558P1558LcCgcTg11AY.340.000097
ORF1ab/nsp31558P1558SCcgTcg11AY.390.000025
ORF1ab/nsp31558P1558SCcgTcg11AY.39.10.00004
ORF1ab/nsp31558P1558PccGccT11AY.4.10.000737
ORF1ab/nsp31558P1558delCCG---11AY.4.50.000107
ORF1ab/nsp31558P1558PccGccT11AY.400.000964
ORF1ab/nsp31558P1558SCcgTcg11AY.420.00004
ORF1ab/nsp31558P1558delCCG---11AY.420.00004
ORF1ab/nsp31558P1558QcCgcAg11AY.440.000006
ORF1ab/nsp31558P1558delCCG---11AY.440.000006
ORF1ab/nsp31558P1558LcCgcTg11AY.450.000122
ORF1ab/nsp31558P1558delCCG---11AY.460.000104
ORF1ab/nsp31558P1558PccGccT11AY.46.20.000635
ORF1ab/nsp31558P1558PccGccT11AY.46.30.000934
ORF1ab/nsp31558P1558PccGccT11AY.46.40.000165
ORF1ab/nsp31558P1558delCCG---11AY.46.60.000072
ORF1ab/nsp31558P1558delCCG---11AY.470.000031
ORF1ab/nsp31558P1558SCcgTcg11AY.50.000021
ORF1ab/nsp31558P1558LcCgcTg11AY.590.00053
ORF1ab/nsp31558P1558del2CCg--g11AY.60.000041
ORF1ab/nsp31558P1558delCCG---11AY.60.000041
ORF1ab/nsp31558P1558delCCG---11AY.660.00107
ORF1ab/nsp31558P1558PccGccT11AY.680.000274
ORF1ab/nsp31558P1558PccGccT11AY.720.001361
ORF1ab/nsp31558P1558QcCgcAg11AY.750.000056
ORF1ab/nsp31558P1558delCCG---11AY.75.10.00018
ORF1ab/nsp31558P1558PccGccT11AY.810.001992
ORF1ab/nsp31558P1558PccGccT11AY.860.00083
ORF1ab/nsp31558P1558PccGccT11AY.880.000884
ORF1ab/nsp31558P1558delCCG---11AY.90.000068
ORF1ab/nsp31558P1558PccGccT11AY.900.000684
ORF1ab/nsp31558P1558PccGccT11AY.910.00073
ORF1ab/nsp31558P1558LcCgcTg11AY.930.000273
ORF1ab/nsp31558P1558PccGccT11AY.940.000443
ORF1ab/nsp31558P1558PccGccT11AY.970.001701
ORF1ab/nsp31558P1558PccGccT11AY.99.10.001553
ORF1ab/nsp31558P1558delCCG---11AY.99.10.001553
ORF1ab/nsp31558P1558SCcgTcg11B.10.000009
ORF1ab/nsp31558P1558RcCgcGg11B.10.000009
ORF1ab/nsp31558P1558del2CCG--C11B.1.10.000018
ORF1ab/nsp31558P1558delCCG---11B.1.10.000018
ORF1ab/nsp31558P1558SCcgTcg11B.1.10.000018
ORF1ab/nsp31558P1558PccGccA11B.1.1.100.001115
ORF1ab/nsp31558P1558SCcgTcg11B.1.1.1130.006993
ORF1ab/nsp31558P1558PccGccT11B.1.1.1330.008475
ORF1ab/nsp31558P1558PccGccT11B.1.1.1570.000913
ORF1ab/nsp31558P1558SCcgTcg11B.1.1.1640.005155
ORF1ab/nsp31558P1558PccGccT11B.1.1.1740.003378
ORF1ab/nsp31558P1558PccGccT11B.1.1.1860.003436
ORF1ab/nsp31558P1558PccGccT11B.1.1.1980.001468
ORF1ab/nsp31558P1558PccGccA11B.1.1.2200.001859
ORF1ab/nsp31558P1558PccGccT11B.1.1.2310.003096
ORF1ab/nsp31558P1558LcCgcTg11B.1.1.2320.001815
ORF1ab/nsp31558P1558PccGccT11B.1.1.2360.006897
ORF1ab/nsp31558P1558PccGccT11B.1.1.2400.004695
ORF1ab/nsp31558P1558PccGccT11B.1.1.2630.001558
ORF1ab/nsp31558P1558PccGccT11B.1.1.2660.012195
ORF1ab/nsp31558P1558PccGccT11B.1.1.270.00565
ORF1ab/nsp31558P1558PccGccT11B.1.1.2790.001121
ORF1ab/nsp31558P1558LcCgcTg11B.1.1.2970.002237
ORF1ab/nsp31558P1558PccGccA11B.1.1.3040.002809
ORF1ab/nsp31558P1558PccGccT11B.1.1.3050.003861
ORF1ab/nsp31558P1558PccGccT11B.1.1.3070.002532
ORF1ab/nsp31558P1558PccGccT11B.1.1.3110.000358
ORF1ab/nsp31558P1558delCCG---11B.1.1.3110.000358
ORF1ab/nsp31558P1558PccGccT11B.1.1.3120.001912
ORF1ab/nsp31558P1558delCCG---11B.1.1.3150.008475
ORF1ab/nsp31558P1558PccGccT11B.1.1.3160.000925
ORF1ab/nsp31558P1558PccGccC11B.1.1.3180.000302
ORF1ab/nsp31558P1558LcCgcTg11B.1.1.3180.000302
ORF1ab/nsp31558P1558PccGccT11B.1.1.3330.001076
ORF1ab/nsp31558P1558PccGccA11B.1.1.3550.015385
ORF1ab/nsp31558P1558PccGccT11B.1.1.3720.000689
ORF1ab/nsp31558P1558PccGccT11B.1.1.3750.011905
ORF1ab/nsp31558P1558PccGccT11B.1.1.3800.009804
ORF1ab/nsp31558P1558PccGccT11B.1.1.40.002976
ORF1ab/nsp31558P1558LcCgcTg11B.1.1.4040.015873
ORF1ab/nsp31558P1558PccGccT11B.1.1.4120.007634
ORF1ab/nsp31558P1558PccGccT11B.1.1.4200.001006
ORF1ab/nsp31558P1558PccGccT11B.1.1.4320.001266
ORF1ab/nsp31558P1558delCCG---11B.1.1.4480.002033
ORF1ab/nsp31558P1558delCCG---11B.1.1.460.004367
ORF1ab/nsp31558P1558PccGccT11B.1.1.4620.008621
ORF1ab/nsp31558P1558PccGccT11B.1.1.4640.001473
ORF1ab/nsp31558P1558PccGccT11B.1.1.4870.005587
ORF1ab/nsp31558P1558delCCG---11B.1.1.510.001718
ORF1ab/nsp31558P1558ACcgGcg11B.1.1.70.000001
ORF1ab/nsp31558P1558TCcgAcg11B.1.1.70.000001
ORF1ab/nsp31558P1558KCCgAAg11B.1.1.70.000001
ORF1ab/nsp31558P1558del1ccGcc-11B.1.1.70.000001
ORF1ab/nsp31558P1558del1Ccg-cg11B.1.1.700.000341
ORF1ab/nsp31558P1558LcCgcTg11B.1.1.700.000341
ORF1ab/nsp31558P1558PccGccC11B.1.1.700.000341
ORF1ab/nsp31558P1558delCCG---11B.1.1400.018868
ORF1ab/nsp31558P1558delCCG---11B.1.1610.017241
ORF1ab/nsp31558P1558delCCG---11B.1.1770.000013
ORF1ab/nsp31558P1558LcCgcTg11B.1.1770.000013
ORF1ab/nsp31558P1558SCcgTcg11B.1.1770.000013
ORF1ab/nsp31558P1558PccGccT11B.1.177.330.001645
ORF1ab/nsp31558P1558PccGccT11B.1.177.410.0025
ORF1ab/nsp31558P1558LcCgcTg11B.1.177.440.000519
ORF1ab/nsp31558P1558LcCgcTg11B.1.177.450.000381
ORF1ab/nsp31558P1558LcCgcTg11B.1.177.460.000918
ORF1ab/nsp31558P1558PccGccT11B.1.177.480.003125
ORF1ab/nsp31558P1558delCCG---11B.1.177.510.004566
ORF1ab/nsp31558P1558PccGccT11B.1.177.540.000606
ORF1ab/nsp31558P1558delCCG---11B.1.177.560.000668
ORF1ab/nsp31558P1558PccGccT11B.1.177.570.000281
ORF1ab/nsp31558P1558PccGccT11B.1.177.60.000977
ORF1ab/nsp31558P1558delCCG---11B.1.177.630.002703
ORF1ab/nsp31558P1558delCCG---11B.1.177.690.001484
ORF1ab/nsp31558P1558LcCgcTg11B.1.177.730.000566
ORF1ab/nsp31558P1558LcCgcTg11B.1.177.810.000189
ORF1ab/nsp31558P1558PccGccT11B.1.177.850.005435
ORF1ab/nsp31558P1558LcCgcTg11B.1.177.860.000183
ORF1ab/nsp31558P1558delCCG---11B.1.20.000009
ORF1ab/nsp31558P1558LcCgcTg11B.1.2120.016667
ORF1ab/nsp31558P1558LcCgcTg11B.1.2210.000071
ORF1ab/nsp31558P1558PccGccT11B.1.2220.001692
ORF1ab/nsp31558P1558delCCG---11B.1.230.006061
ORF1ab/nsp31558P1558SCcgTcg11B.1.2320.000537
ORF1ab/nsp31558P1558PccGccT11B.1.2480.029412
ORF1ab/nsp31558P1558delCCG---11B.1.2580.000067
ORF1ab/nsp31558P1558delCCG---11B.1.258.160.001637
ORF1ab/nsp31558P1558PccGccT11B.1.2650.001271
ORF1ab/nsp31558P1558PccGccT11B.1.2980.002114
ORF1ab/nsp31558P1558del1ccGcc-11B.1.3110.000275
ORF1ab/nsp31558P1558PccGccT11B.1.3360.002439
ORF1ab/nsp31558P1558delCCG---11B.1.3510.00003
ORF1ab/nsp31558P1558PccGccT11B.1.351.30.000876
ORF1ab/nsp31558P1558ACcgGcg11B.1.3550.011111
ORF1ab/nsp31558P1558PccGccT11B.1.36.160.001425
ORF1ab/nsp31558P1558PccGccT11B.1.36.240.006173
ORF1ab/nsp31558P1558PccGccT11B.1.36.290.000517
ORF1ab/nsp31558P1558PccGccT11B.1.36.70.004
ORF1ab/nsp31558P1558PccGccT11B.1.3620.001541
ORF1ab/nsp31558P1558PccGccT11B.1.3690.000285
ORF1ab/nsp31558P1558PccGccT11B.1.3780.006849
ORF1ab/nsp31558P1558PccGccA11B.1.3970.004854
ORF1ab/nsp31558P1558PccGccA11B.1.4040.001302
ORF1ab/nsp31558P1558PccGccT11B.1.4110.003704
ORF1ab/nsp31558P1558PccGccT11B.1.4150.014286
ORF1ab/nsp31558P1558LcCgcTg11B.1.4160.001269
ORF1ab/nsp31558P1558PccGccA11B.1.416.10.001563
ORF1ab/nsp31558P1558PccGccT11B.1.4280.00102
ORF1ab/nsp31558P1558LcCgcTg11B.1.4560.003268
ORF1ab/nsp31558P1558PccGccT11B.1.4600.017857
ORF1ab/nsp31558P1558LcCgcTg11B.1.4680.005714
ORF1ab/nsp31558P1558PccGccT11B.1.4690.00361
ORF1ab/nsp31558P1558PccGccT11B.1.4820.083333
ORF1ab/nsp31558P1558PccGccT11B.1.4920.007042
ORF1ab/nsp31558P1558PccGccA11B.1.5040.03125
ORF1ab/nsp31558P1558PccGccA11B.1.5050.004386
ORF1ab/nsp31558P1558PccGccT11B.1.5230.002451
ORF1ab/nsp31558P1558LcCgcTg11B.1.5240.001406
ORF1ab/nsp31558P1558PccGccA11B.1.5250.000113
ORF1ab/nsp31558P1558LcCgcTg11B.1.5250.000113
ORF1ab/nsp31558P1558PccGccA11B.1.5610.000397
ORF1ab/nsp31558P1558delCCG---11B.1.5610.000397
ORF1ab/nsp31558P1558PccGccT11B.1.5640.000426
ORF1ab/nsp31558P1558PccGccT11B.1.5760.000907
ORF1ab/nsp31558P1558SCcgTcg11B.1.5950.000261
ORF1ab/nsp31558P1558LcCgcTg11B.1.6000.005848
ORF1ab/nsp31558P1558SCcgTcg11B.1.617.10.000129
ORF1ab/nsp31558P1558del2CCg--g11B.1.617.20.000004
ORF1ab/nsp31558P1558PccGccT11B.1.6190.000871
ORF1ab/nsp31558P1558delCCG---11B.1.6210.000089
ORF1ab/nsp31558P1558PccGccT11B.1.6230.000536
ORF1ab/nsp31558P1558PccGccA11B.1.6270.00202
ORF1ab/nsp31558P1558PccGccT11B.1.6290.013333
ORF1ab/nsp31558P1558RcCgcGg11B.1.6360.006711
ORF1ab/nsp31558P1558PccGccT11B.1.9.50.005682
ORF1ab/nsp31558P1558PccGccT11B.260.014706
ORF1ab/nsp31558P1558delCCG---11B.340.013699
ORF1ab/nsp31558P1558PccGccT11B.40.002208
ORF1ab/nsp31558P1558LcCgcTg11B.40.002208
ORF1ab/nsp31558P1558PccGccT11B.60.00091
ORF1ab/nsp31558P1558PccGccT11B.6.60.000889
ORF1ab/nsp31558P1558LcCgcTg11C.160.00106
ORF1ab/nsp31558P1558PccGccA11C.160.00106
ORF1ab/nsp31558P1558KCCgAAg11C.350.000774
ORF1ab/nsp31558P1558TCcgAcg11D.20.000075
ORF1ab/nsp31558P1558RcCgcGg11D.20.000075
ORF1ab/nsp31558P1558PccGccT11N.20.038462
ORF1ab/nsp31558P1558SCcgTcg11P.1.10.000318
ORF1ab/nsp31558P1558PccGccA11P.1.100.000269
ORF1ab/nsp31558P1558LcCgcTg11P.1.120.000484
ORF1ab/nsp31558P1558LcCgcTg11P.1.150.000232
ORF1ab/nsp31558P1558PccGccC11P.1.160.000374
ORF1ab/nsp31558P1558PccGccT11P.1.17.10.000875
ORF1ab/nsp31558P1558PccGccT11P.70.004367
ORF1ab/nsp31558P1558PccGccT11Q.50.016949
ORF1ab/nsp31558P1558PccGccT11Q.70.001111
ORF1ab/nsp31558P1558delCCG---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.