CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1558 | P1558P | P2376P | syn | ccG | ccT | 27568 | 26125 | 0.947657 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558P | P2376P | syn | ccG | ccA | 27568 | 1178 | 0.0427307 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558P | P2376P | syn | ccG | ccC | 27568 | 265 | 0.00961259 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558L | P2376L | nonsyn | cCg | cTg | 379 | 378 | 0.997361 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558L | P2376L | nonsyn | cCG | cTC | 379 | 1 | 0.00263852 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558S | P2376S | nonsyn | Ccg | Tcg | 123 | 123 | 1 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558del | P2376del | del | CCG | --- | 93 | 93 | 1 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558Q | P2376Q | nonsyn | cCg | cAg | 51 | 51 | 1 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558R | P2376R | nonsyn | cCg | cGg | 18 | 18 | 1 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558del1 | P2376del1 | del | ccG | cc- | 5 | 3 | 0.6 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558del1 | P2376del1 | del | Ccg | -cg | 5 | 2 | 0.4 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558T | P2376T | nonsyn | Ccg | Acg | 4 | 4 | 1 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558A | P2376A | nonsyn | Ccg | Gcg | 4 | 4 | 1 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558del2 | P2376del2 | del | CCg | --g | 4 | 3 | 0.75 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558del2 | P2376del2 | del | CCG | --C | 4 | 1 | 0.25 | 7391-7393 |
ORF1ab/nsp3 | 1558 | P1558K | P2376K | nonsyn | CCg | AAg | 2 | 2 | 1 | 7391-7393 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 26125 | 27568 | All | 0.004997 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1178 | 27568 | All | 0.000225 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 265 | 27568 | All | 0.000051 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 15363 | 15364 | AY.75 | 0.860672 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 15364 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1939 | 2151 | AY.4 | 0.003018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 206 | 2151 | AY.4 | 0.000321 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 6 | 2151 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1707 | 1944 | B.1.1.7 | 0.001528 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 139 | 1944 | B.1.1.7 | 0.000124 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 98 | 1944 | B.1.1.7 | 0.000088 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1260 | 1300 | B.1.617.2 | 0.004744 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 26 | 1300 | B.1.617.2 | 0.000098 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 14 | 1300 | B.1.617.2 | 0.000053 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1110 | 1129 | AY.43 | 0.004918 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 16 | 1129 | AY.43 | 0.000071 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 3 | 1129 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 536 | 538 | AY.4.2 | 0.011625 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 538 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 378 | 379 | All | 0.000072 |
ORF1ab/nsp3 | 1558 | P1558L | cCG | cTC | 1 | 379 | All | 0 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 230 | 343 | AY.25 | 0.001383 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 99 | 343 | AY.25 | 0.000595 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 14 | 343 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 155 | 272 | B.1.2 | 0.001365 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 117 | 272 | B.1.2 | 0.00103 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 192 | 216 | AY.44 | 0.001169 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 22 | 216 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 2 | 216 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 211 | 211 | B.1.362.2 | 0.995283 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 184 | 184 | B.1.1.204 | 0.559271 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 104 | 160 | P.1 | 0.001638 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 51 | 160 | P.1 | 0.000803 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 5 | 160 | P.1 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 132 | 143 | B.1.160 | 0.004117 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 11 | 143 | B.1.160 | 0.000343 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 107 | 142 | AY.103 | 0.000664 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 34 | 142 | AY.103 | 0.000211 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 142 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 123 | 123 | All | 0.000024 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 102 | 117 | B.1 | 0.000934 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 14 | 117 | B.1 | 0.000128 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 117 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 106 | 108 | AY.5 | 0.002189 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 108 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 83 | 101 | AY.3 | 0.000826 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 101 | AY.3 | 0.000179 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 98 | 100 | B.1.243 | 0.006819 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 100 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 92 | 97 | AY.102 | 0.002439 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 97 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 93 | 93 | All | 0.000018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 69 | 89 | B.1.177 | 0.000909 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 19 | 89 | B.1.177 | 0.00025 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 89 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 69 | 83 | B.1.1 | 0.001252 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 12 | 83 | B.1.1 | 0.000218 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 2 | 83 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 71 | 71 | B.1.351 | 0.002111 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 68 | 68 | B.1.1.7 | 0.000061 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 67 | 67 | B.1.1.291 | 0.04974 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 60 | 66 | AY.20 | 0.002332 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 66 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 66 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 58 | 63 | AZ.2 | 0.047619 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 63 | AZ.2 | 0.003284 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 63 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 61 | 61 | AY.9 | 0.004123 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 41 | 59 | AY.39 | 0.001013 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 59 | AY.39 | 0.000445 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 59 | 59 | B.1.602 | 0.385621 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 52 | 57 | AY.100 | 0.002392 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 57 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 57 | 57 | AY.4 | 0.000089 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 54 | 54 | AY.71 | 0.025653 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 51 | 51 | All | 0.00001 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 46 | 50 | AY.26 | 0.001302 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 50 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 50 | 50 | AY.99.2 | 0.004608 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 45 | 47 | AY.6 | 0.001851 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 47 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 47 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 36 | 46 | B.1.429 | 0.000847 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 8 | 46 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 2 | 46 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 43 | 43 | B.1.597 | 0.199074 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 43 | 43 | P.2 | 0.008025 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 38 | 40 | AY.75.1 | 0.006852 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 40 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 40 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 26 | 39 | B.1.526 | 0.000611 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 8 | 39 | B.1.526 | 0.000188 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 5 | 39 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 26 | 36 | AY.36 | 0.003854 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 10 | 36 | AY.36 | 0.001482 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 34 | 34 | B.1.416 | 0.043147 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 33 | 33 | B.1 | 0.000302 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 32 | 32 | AY.118 | 0.002005 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 32 | 32 | AY.23 | 0.002232 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 30 | 31 | AY.47 | 0.000933 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 31 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 31 | 31 | B.1.1.317 | 0.012762 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 19 | 31 | C.37 | 0.002205 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 12 | 31 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 29 | 30 | B.1.1.214 | 0.001608 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 30 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 15 | 29 | P.1.14 | 0.000717 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 13 | 29 | P.1.14 | 0.000621 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 29 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 28 | 28 | AY.117 | 0.002366 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 27 | 27 | B.1.146 | 0.114407 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 23 | 27 | B.1.621 | 0.002036 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 27 | B.1.621 | 0.000354 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 23 | 26 | AY.33 | 0.001536 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 26 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 26 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 26 | 26 | B.1.588.1 | 1 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 21 | 25 | AY.120 | 0.000781 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 25 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 25 | 25 | AY.26 | 0.000708 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 23 | 24 | B.1.1.519 | 0.000913 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 24 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 21 | 24 | B.1.351 | 0.000624 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 2 | 24 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 24 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 24 | 24 | C.36 | 0.021858 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 20 | 23 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 2 | 23 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 23 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 20 | 22 | AY.34 | 0.001939 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 22 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 15 | 22 | B.1.1.222 | 0.00306 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 6 | 22 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 22 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 21 | 22 | B.1.320 | 0.026152 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 22 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 15 | 22 | B.1.36 | 0.002189 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 6 | 22 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 22 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 20 | 22 | P.1.15 | 0.004647 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 22 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 21 | 21 | AY.3.1 | 0.00179 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 19 | 20 | AY.46 | 0.001978 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 20 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 20 | 20 | B.33 | 0.425532 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 19 | 19 | AY.4.5 | 0.002042 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 19 | 19 | AY.62 | 0.008279 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 19 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 19 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 19 | B.1.36.18 | 0.007563 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 19 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 19 | 19 | B.1.637 | 0.001388 |
ORF1ab/nsp3 | 1558 | P1558R | cCg | cGg | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 12 | 18 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 18 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 18 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 16 | 18 | AY.39.1 | 0.000634 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 18 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 18 | B.1.1.343 | 0.375 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 18 | 18 | B.1.1.50 | 0.01222 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 18 | 18 | B.1.631 | 0.060606 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 16 | 17 | AY.84 | 0.006999 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 17 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 9 | 17 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 17 | B.1.427 | 0.000404 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 9 | 16 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 6 | 16 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 16 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 12 | 16 | B.1.177.86 | 0.002201 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 16 | B.1.177.86 | 0.000734 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 15 | 15 | B.1.177.17 | 0.012315 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 9 | 14 | AY.65 | 0.004797 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 14 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 14 | 14 | B.1.1.33 | 0.005892 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 12 | 13 | AY.46.6 | 0.000866 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 13 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 13 | 13 | AY.61 | 0.001362 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 13 | 13 | B.1.239 | 0.015873 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 13 | 13 | B.1.466.2 | 0.005086 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 12 | AY.106 | 0.003349 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 12 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 12 | 12 | B.1.351.5 | 0.007194 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 11 | 11 | AE.8 | 0.005379 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 11 | AY.13 | 0.00161 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 11 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 11 | 11 | AY.37 | 0.003477 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 7 | 11 | AY.46.5 | 0.001389 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 11 | AY.46.5 | 0.000794 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 11 | B | 0.001278 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 11 | B | 0.000128 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 11 | 11 | B.1.438.1 | 0.00118 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 11 | 11 | B.1.478 | 0.129412 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 11 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 3 | 11 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 11 | 11 | B.1.620 | 0.010407 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 11 | 11 | Q.1 | 0.00139 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 10 | 10 | A.23.1 | 0.007042 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 10 | AY.67 | 0.004643 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 5 | 10 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 10 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 10 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 10 | B.1.1.216 | 0.007124 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 10 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 10 | 10 | B.1.609 | 0.004794 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 9 | 10 | P.1.2 | 0.010405 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 10 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 9 | 9 | A.28 | 0.02381 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 9 | 9 | AY.51 | 0.008182 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 9 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 9 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp3 | 1558 | P1558R | cCg | cGg | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | AY.55 | 0.007339 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 8 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 8 | AY.70 | 0.000834 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | AY.93 | 0.002185 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | B.1.1.225 | 0.057554 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 8 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 8 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | B.1.214.2 | 0.004796 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 8 | 8 | N.5 | 0.014134 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | AY.50 | 0.005596 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | AY.7.1 | 0.000789 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 7 | 7 | B.1.1.176 | 0.003076 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 7 | 7 | B.1.1.232 | 0.012704 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | B.1.1.63 | 0.002701 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 7 | B.1.241 | 0.003247 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 3 | 7 | B.1.241 | 0.002435 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | B.40 | 0.00255 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 7 | 7 | C.18 | 0.018135 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 6 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 6 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 6 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 6 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 3 | 6 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | AY.16.1 | 0.00282 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | AY.34.1 | 0.00306 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | B.1.177.32 | 0.008097 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 6 | B.1.177.43 | 0.005908 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 6 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | B.1.177.60 | 0.001311 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | B.1.177.87 | 0.004367 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | B.1.391 | 0.006764 |
ORF1ab/nsp3 | 1558 | P1558R | cCg | cGg | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 6 | 6 | B.1.628 | 0.002114 |
ORF1ab/nsp3 | 1558 | P1558del1 | ccG | cc- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558del1 | Ccg | -cg | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 5 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 5 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | AY.2 | 0.001781 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | AY.38 | 0.002496 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 4 | 5 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 5 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.1.466 | 0.043478 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 5 | 5 | B.1.1.67 | 0.022831 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.111 | 0.005875 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.153 | 0.09434 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.232 | 0.002687 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 5 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 5 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 5 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 4 | 5 | C.36.3 | 0.002269 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 5 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 5 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 5 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 5 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 4 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1558 | P1558A | Ccg | Gcg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558T | Ccg | Acg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558del2 | CCg | --g | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558del2 | CCG | --C | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 4 | 4 | AY.115 | 0.020833 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 4 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 4 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 4 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | B.1.1.448 | 0.00813 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | B.1.1.54 | 0.012085 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 4 | 4 | B.1.36.16 | 0.005698 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | B.1.36.17 | 0.001976 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 4 | 4 | B.1.36.31 | 0.007005 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 4 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 4 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 4 | 4 | B.6 | 0.00364 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 4 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 4 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | AY.1 | 0.001187 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | AY.46.1 | 0.00308 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 3 | 3 | AY.96 | 0.006224 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.1.219 | 0.015 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.1.265 | 0.009464 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 3 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 3 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 3 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.237 | 0.014925 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.367 | 0.002377 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 3 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | C.14 | 0.012987 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 3 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 3 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 3 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 3 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1558 | P1558L | cCG | cTC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp3 | 1558 | P1558K | CCg | AAg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1558 | P1558del1 | ccG | cc- | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1558 | P1558del1 | Ccg | -cg | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1558 | P1558A | Ccg | Gcg | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp3 | 1558 | P1558T | Ccg | Acg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.1.299 | 0.02439 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.1.57 | 0.022989 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.306 | 0.011429 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | B.1.545 | 0.028986 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | C.1 | 0.002392 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | L.3 | 0.007092 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 2 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AL.1 | 0.012987 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1558 | P1558del2 | CCg | --g | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1558 | P1558del2 | CCg | --g | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1558 | P1558Q | cCg | cAg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558R | cCg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558del2 | CCG | --C | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.1.113 | 0.006993 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.1.355 | 0.015385 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.380 | 0.009804 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1558 | P1558A | Ccg | Gcg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558T | Ccg | Acg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558K | CCg | AAg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558del1 | ccG | cc- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1558 | P1558del1 | Ccg | -cg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.248 | 0.029412 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 1558 | P1558del1 | ccG | cc- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1558 | P1558A | Ccg | Gcg | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.482 | 0.083333 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1558 | P1558del2 | CCg | --g | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp3 | 1558 | P1558R | cCg | cGg | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.26 | 0.014706 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1558 | P1558K | CCg | AAg | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1558 | P1558T | Ccg | Acg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1558 | P1558R | cCg | cGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | N.2 | 0.038462 |
ORF1ab/nsp3 | 1558 | P1558S | Ccg | Tcg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1558 | P1558L | cCg | cTg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccC | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp3 | 1558 | P1558P | ccG | ccT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 1558 | P1558del | CCG | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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