CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1557 & Codon = gcA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31557A1557AA2375AsyngcCgcA36111080.02990867388-7390

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31557A1557AgcCgcA1083611All0.000021
ORF1ab/nsp31557A1557AgcCgcA91195B.1.1.70.000008
ORF1ab/nsp31557A1557AgcCgcA29345AY.40.000045
ORF1ab/nsp31557A1557AgcCgcA6223B.1.617.20.000023
ORF1ab/nsp31557A1557AgcCgcA340B.1.20.000026
ORF1ab/nsp31557A1557AgcCgcA839AY.440.000049
ORF1ab/nsp31557A1557AgcCgcA135B.10.000009
ORF1ab/nsp31557A1557AgcCgcA325AY.250.000018
ORF1ab/nsp31557A1557AgcCgcA316P.10.000047
ORF1ab/nsp31557A1557AgcCgcA1414B.1.4210.104478
ORF1ab/nsp31557A1557AgcCgcA212AY.30.00002
ORF1ab/nsp31557A1557AgcCgcA110AY.470.000031
ORF1ab/nsp31557A1557AgcCgcA18B.1.10.000018
ORF1ab/nsp31557A1557AgcCgcA18B.1.6210.000089
ORF1ab/nsp31557A1557AgcCgcA67AY.910.004383
ORF1ab/nsp31557A1557AgcCgcA27B.1.5250.000226
ORF1ab/nsp31557A1557AgcCgcA16AY.460.000104
ORF1ab/nsp31557A1557AgcCgcA55B.1.177.730.002831
ORF1ab/nsp31557A1557AgcCgcA13AY.75.10.00018
ORF1ab/nsp31557A1557AgcCgcA12AY.350.000233
ORF1ab/nsp31557A1557AgcCgcA22B.1.1110.00235
ORF1ab/nsp31557A1557AgcCgcA22B.1.2430.000139
ORF1ab/nsp31557A1557AgcCgcA11A.30.002096
ORF1ab/nsp31557A1557AgcCgcA11AY.10.000396
ORF1ab/nsp31557A1557AgcCgcA11AY.4.50.000107
ORF1ab/nsp31557A1557AgcCgcA11AY.590.00053
ORF1ab/nsp31557A1557AgcCgcA11AY.610.000105
ORF1ab/nsp31557A1557AgcCgcA11AY.980.000079
ORF1ab/nsp31557A1557AgcCgcA11B.1.1.510.001718

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.