CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1557

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1557	A1557A	A2375A	syn	gcC	gcT	3611	3491	0.966768	7388-7390
ORF1ab/nsp3	1557	A1557A	A2375A	syn	gcC	gcA	3611	108	0.0299086	7388-7390
ORF1ab/nsp3	1557	A1557A	A2375A	syn	gcC	gcG	3611	12	0.00332318	7388-7390
ORF1ab/nsp3	1557	A1557T	A2375T	nonsyn	Gcc	Acc	1006	1006	1	7388-7390
ORF1ab/nsp3	1557	A1557V	A2375V	nonsyn	gCc	gTc	515	515	1	7388-7390
ORF1ab/nsp3	1557	A1557del	A2375del	del	GCC	---	77	77	1	7388-7390
ORF1ab/nsp3	1557	A1557S	A2375S	nonsyn	Gcc	Tcc	74	72	0.972973	7388-7390
ORF1ab/nsp3	1557	A1557S	A2375S	nonsyn	GcC	TcT	74	2	0.027027	7388-7390
ORF1ab/nsp3	1557	A1557del1	A2375del1	del	gCc	g-c	25	16	0.64	7388-7390
ORF1ab/nsp3	1557	A1557del1	A2375del1	del	gcC	gc-	25	6	0.24	7388-7390
ORF1ab/nsp3	1557	A1557del1	A2375del1	del	gCC	g-A	25	1	0.04	7388-7390
ORF1ab/nsp3	1557	A1557del1	A2375del1	del	gCC	gY-	25	1	0.04	7388-7390
ORF1ab/nsp3	1557	A1557del1	A2375del1	del	Gcc	-cc	25	1	0.04	7388-7390
ORF1ab/nsp3	1557	A1557P	A2375P	nonsyn	Gcc	Ccc	9	9	1	7388-7390
ORF1ab/nsp3	1557	A1557del2	A2375del2	del	gCC	g--	9	8	0.888889	7388-7390
ORF1ab/nsp3	1557	A1557del2	A2375del2	del	GCC	A--	9	1	0.111111	7388-7390
ORF1ab/nsp3	1557	A1557D	A2375D	nonsyn	gCc	gAc	8	7	0.875	7388-7390
ORF1ab/nsp3	1557	A1557D	A2375D	nonsyn	gCC	gAT	8	1	0.125	7388-7390
ORF1ab/nsp3	1557	A1557G	A2375G	nonsyn	gCc	gGc	3	3	1	7388-7390
ORF1ab/nsp3	1557	A1557F	A2375F	nonsyn	GCc	TTc	2	2	1	7388-7390
ORF1ab/nsp3	1557	A1557I	A2375I	nonsyn	GCc	ATc	1	1	1	7388-7390

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3491	3611	All	0.000668
ORF1ab/nsp3	1557	A1557A	gcC	gcA	108	3611	All	0.000021
ORF1ab/nsp3	1557	A1557A	gcC	gcG	12	3611	All	0.000002
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1181	1195	B.1.1.7	0.001057
ORF1ab/nsp3	1557	A1557A	gcC	gcA	9	1195	B.1.1.7	0.000008
ORF1ab/nsp3	1557	A1557A	gcC	gcG	5	1195	B.1.1.7	0.000004
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1006	1006	All	0.000192
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	672	672	AY.4	0.001046
ORF1ab/nsp3	1557	A1557V	gCc	gTc	515	515	All	0.000098
ORF1ab/nsp3	1557	A1557A	gcC	gcT	316	345	AY.4	0.000492
ORF1ab/nsp3	1557	A1557A	gcC	gcA	29	345	AY.4	0.000045
ORF1ab/nsp3	1557	A1557A	gcC	gcT	262	262	AY.6	0.010776
ORF1ab/nsp3	1557	A1557A	gcC	gcT	237	237	B.1.221.4	0.9875
ORF1ab/nsp3	1557	A1557A	gcC	gcT	217	223	B.1.617.2	0.000817
ORF1ab/nsp3	1557	A1557A	gcC	gcA	6	223	B.1.617.2	0.000023
ORF1ab/nsp3	1557	A1557A	gcC	gcT	144	144	AY.38	0.071892
ORF1ab/nsp3	1557	A1557A	gcC	gcT	138	138	B.1.221	0.009803
ORF1ab/nsp3	1557	A1557V	gCc	gTc	97	97	AY.70	0.020225
ORF1ab/nsp3	1557	A1557V	gCc	gTc	92	92	AY.4	0.000143
ORF1ab/nsp3	1557	A1557del	GCC	---	77	77	All	0.000015
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	72	74	All	0.000014
ORF1ab/nsp3	1557	A1557S	GcC	TcT	2	74	All	0
ORF1ab/nsp3	1557	A1557A	gcC	gcT	65	65	AY.29	0.001025
ORF1ab/nsp3	1557	A1557A	gcC	gcT	63	63	B.1.1.333	0.067815
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	61	61	AY.103	0.000379
ORF1ab/nsp3	1557	A1557A	gcC	gcT	58	58	AY.43	0.000257
ORF1ab/nsp3	1557	A1557V	gCc	gTc	54	54	AY.103	0.000335
ORF1ab/nsp3	1557	A1557V	gCc	gTc	54	54	AY.3	0.000537
ORF1ab/nsp3	1557	A1557A	gcC	gcT	51	51	AY.103	0.000317
ORF1ab/nsp3	1557	A1557A	gcC	gcT	49	49	B.1.429	0.001153
ORF1ab/nsp3	1557	A1557A	gcC	gcT	46	46	AY.9.2	0.00169
ORF1ab/nsp3	1557	A1557A	gcC	gcT	37	40	B.1.2	0.000326
ORF1ab/nsp3	1557	A1557A	gcC	gcA	3	40	B.1.2	0.000026
ORF1ab/nsp3	1557	A1557A	gcC	gcT	31	39	AY.44	0.000189
ORF1ab/nsp3	1557	A1557A	gcC	gcA	8	39	AY.44	0.000049
ORF1ab/nsp3	1557	A1557A	gcC	gcT	38	38	B.1.177	0.0005
ORF1ab/nsp3	1557	A1557A	gcC	gcT	34	35	B.1	0.000311
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	35	B.1	0.000009
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	30	30	B.1.1	0.000544
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	30	30	B.1.617.2	0.000113
ORF1ab/nsp3	1557	A1557A	gcC	gcT	29	29	B.1.160	0.000904
ORF1ab/nsp3	1557	A1557del	GCC	---	27	27	B.1.1.7	0.000024
ORF1ab/nsp3	1557	A1557V	gCc	gTc	26	26	B.1.617.2	0.000098
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	16	25	All	0.000003
ORF1ab/nsp3	1557	A1557del1	gcC	gc-	6	25	All	0.000001
ORF1ab/nsp3	1557	A1557del1	Gcc	-cc	1	25	All	0
ORF1ab/nsp3	1557	A1557del1	gCC	gY-	1	25	All	0
ORF1ab/nsp3	1557	A1557del1	gCC	g-A	1	25	All	0
ORF1ab/nsp3	1557	A1557A	gcC	gcT	22	25	AY.25	0.000132
ORF1ab/nsp3	1557	A1557A	gcC	gcA	3	25	AY.25	0.000018
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	25	25	B.1.1.7	0.000022
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	22	22	B.1.2	0.000194
ORF1ab/nsp3	1557	A1557A	gcC	gcT	21	21	B.1.177.21	0.001606
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	18	18	B.1	0.000165
ORF1ab/nsp3	1557	A1557A	gcC	gcT	18	18	B.1.1.205	0.066914
ORF1ab/nsp3	1557	A1557A	gcC	gcT	17	17	AY.39	0.00042
ORF1ab/nsp3	1557	A1557A	gcC	gcT	17	17	B.1.1.326	0.02993
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	16	16	AY.3	0.000159
ORF1ab/nsp3	1557	A1557A	gcC	gcT	16	16	D.2	0.001201
ORF1ab/nsp3	1557	A1557A	gcC	gcT	13	16	P.1	0.000205
ORF1ab/nsp3	1557	A1557A	gcC	gcA	3	16	P.1	0.000047
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	15	15	AY.43	0.000066
ORF1ab/nsp3	1557	A1557V	gCc	gTc	15	15	B.1.1.7	0.000013
ORF1ab/nsp3	1557	A1557A	gcC	gcA	14	14	B.1.421	0.104478
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	13	13	AY.23	0.000907
ORF1ab/nsp3	1557	A1557A	gcC	gcT	13	13	AY.26	0.000368
ORF1ab/nsp3	1557	A1557V	gCc	gTc	12	12	A	0.004644
ORF1ab/nsp3	1557	A1557A	gcC	gcT	10	12	AY.3	0.000099
ORF1ab/nsp3	1557	A1557A	gcC	gcA	2	12	AY.3	0.00002
ORF1ab/nsp3	1557	A1557V	gCc	gTc	12	12	AY.42	0.000483
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	12	12	AY.44	0.000073
ORF1ab/nsp3	1557	A1557A	gcC	gcT	12	12	B.1.466.2	0.004695
ORF1ab/nsp3	1557	A1557A	gcC	gcT	10	10	AY.102	0.000265
ORF1ab/nsp3	1557	A1557A	gcC	gcT	9	10	AY.47	0.00028
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	10	AY.47	0.000031
ORF1ab/nsp3	1557	A1557V	gCc	gTc	10	10	B	0.001278
ORF1ab/nsp3	1557	A1557V	gCc	gTc	10	10	B.1	0.000092
ORF1ab/nsp3	1557	A1557A	gcC	gcT	10	10	B.1.263	0.47619
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	9	9	All	0.000002
ORF1ab/nsp3	1557	A1557del2	gCC	g--	8	9	All	0.000002
ORF1ab/nsp3	1557	A1557del2	GCC	A--	1	9	All	0
ORF1ab/nsp3	1557	A1557V	gCc	gTc	9	9	AY.44	0.000055
ORF1ab/nsp3	1557	A1557A	gcC	gcT	9	9	AY.98.1	0.000436
ORF1ab/nsp3	1557	A1557V	gCc	gTc	9	9	B.1.2	0.000079
ORF1ab/nsp3	1557	A1557A	gcC	gcT	9	9	B.1.36.36	0.005418
ORF1ab/nsp3	1557	A1557D	gCc	gAc	7	8	All	0.000001
ORF1ab/nsp3	1557	A1557D	gCC	gAT	1	8	All	0
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	8	8	AY.102	0.000212
ORF1ab/nsp3	1557	A1557A	gcC	gcT	8	8	AY.23	0.000558
ORF1ab/nsp3	1557	A1557V	gCc	gTc	8	8	AY.43	0.000035
ORF1ab/nsp3	1557	A1557A	gcC	gcT	7	8	B.1.1	0.000127
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	8	B.1.1	0.000018
ORF1ab/nsp3	1557	A1557del1	gcC	gc-	3	8	B.1.1.7	0.000003
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	3	8	B.1.1.7	0.000003
ORF1ab/nsp3	1557	A1557del1	gCC	gY-	1	8	B.1.1.7	0.000001
ORF1ab/nsp3	1557	A1557del1	Gcc	-cc	1	8	B.1.1.7	0.000001
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	8	8	B.1.617.2	0.00003
ORF1ab/nsp3	1557	A1557A	gcC	gcT	7	8	B.1.621	0.00062
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	8	B.1.621	0.000089
ORF1ab/nsp3	1557	A1557A	gcC	gcT	7	8	B.40	0.00255
ORF1ab/nsp3	1557	A1557A	gcC	gcG	1	8	B.40	0.000364
ORF1ab/nsp3	1557	A1557V	gCc	gTc	7	7	AY.29	0.00011
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	7	7	AY.4.2	0.000152
ORF1ab/nsp3	1557	A1557A	gcC	gcA	6	7	AY.91	0.004383
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	7	AY.91	0.00073
ORF1ab/nsp3	1557	A1557A	gcC	gcT	7	7	B	0.000895
ORF1ab/nsp3	1557	A1557A	gcC	gcG	4	7	B.1.525	0.000453
ORF1ab/nsp3	1557	A1557A	gcC	gcA	2	7	B.1.525	0.000226
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	7	B.1.525	0.000113
ORF1ab/nsp3	1557	A1557A	gcC	gcT	7	7	B.1.596	0.00061
ORF1ab/nsp3	1557	A1557A	gcC	gcT	7	7	R.1	0.00063
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	4	6		0.222222
ORF1ab/nsp3	1557	A1557S	GcC	TcT	2	6		0.111111
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	AY.100	0.000276
ORF1ab/nsp3	1557	A1557V	gCc	gTc	6	6	AY.119	0.000212
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	AY.20	0.000233
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	6	6	AY.34.1	0.00306
ORF1ab/nsp3	1557	A1557V	gCc	gTc	6	6	AY.36	0.000889
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	6	6	AY.39	0.000148
ORF1ab/nsp3	1557	A1557A	gcC	gcT	5	6	AY.46	0.00052
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	6	AY.46	0.000104
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	AY.5	0.000124
ORF1ab/nsp3	1557	A1557V	gCc	gTc	6	6	AY.5	0.000124
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	AY.54	0.000572
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	AY.9	0.000406
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	B.1.1.28	0.001867
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	B.1.351	0.000178
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	B.1.509	0.005195
ORF1ab/nsp3	1557	A1557A	gcC	gcT	6	6	B.1.639	0.130435
ORF1ab/nsp3	1557	A1557A	gcC	gcT	5	5	AY.119	0.000177
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	5	5	AY.25	0.00003
ORF1ab/nsp3	1557	A1557V	gCc	gTc	5	5	AY.25	0.00003
ORF1ab/nsp3	1557	A1557A	gcC	gcT	5	5	AY.34	0.000485
ORF1ab/nsp3	1557	A1557del	GCC	---	5	5	AY.4	0.000008
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	5	5	AY.46	0.00052
ORF1ab/nsp3	1557	A1557A	gcC	gcT	5	5	AY.75	0.00028
ORF1ab/nsp3	1557	A1557del	GCC	---	5	5	B.1	0.000046
ORF1ab/nsp3	1557	A1557A	gcC	gcA	5	5	B.1.177.73	0.002831
ORF1ab/nsp3	1557	A1557A	gcC	gcT	5	5	B.1.526	0.000118
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	5	5	B.1.596	0.000436
ORF1ab/nsp3	1557	A1557A	gcC	gcT	5	5	Q.8	0.000825
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4		0.222222
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	4	4	AY.100	0.000184
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4	AY.3.1	0.000341
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4	AY.30	0.001583
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4	AY.33	0.000267
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4	AY.93	0.001092
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4	AY.99.2	0.000369
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	3	4	B.1	0.000027
ORF1ab/nsp3	1557	A1557del1	gcC	gc-	1	4	B.1	0.000009
ORF1ab/nsp3	1557	A1557V	gCc	gTc	4	4	B.1.1	0.000073
ORF1ab/nsp3	1557	A1557V	gCc	gTc	4	4	B.1.1.519	0.000159
ORF1ab/nsp3	1557	A1557del2	gCC	g--	3	4	B.1.1.7	0.000003
ORF1ab/nsp3	1557	A1557del2	GCC	A--	1	4	B.1.1.7	0.000001
ORF1ab/nsp3	1557	A1557V	gCc	gTc	4	4	B.1.177.8	0.00301
ORF1ab/nsp3	1557	A1557A	gcC	gcT	4	4	B.1.540	0.038835
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	4	4	B.1.637	0.000292
ORF1ab/nsp3	1557	A1557G	gCc	gGc	3	3	All	0.000001
ORF1ab/nsp3	1557	A1557V	gCc	gTc	3	3	AY.102	0.00008
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	AY.120	0.000112
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	3	3	AY.26	0.000085
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	AY.4.2	0.000065
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	3	3	AY.43	0.000013
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	AY.45	0.000365
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	3	3	AY.46.4	0.000494
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	3	3	AY.5	0.000062
ORF1ab/nsp3	1557	A1557V	gCc	gTc	3	3	AY.59	0.001589
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	AY.7.2	0.001678
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	3	AY.75.1	0.000361
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	3	AY.75.1	0.00018
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	3	3	B.1.1.1	0.00098
ORF1ab/nsp3	1557	A1557V	gCc	gTc	3	3	B.1.1.306	0.001315
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	1557	A1557V	gCc	gTc	3	3	B.1.1.83	0.00813
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	3	3	B.1.147	0.002268
ORF1ab/nsp3	1557	A1557V	gCc	gTc	3	3	B.1.177	0.00004
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	B.1.258	0.0002
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	B.1.36.29	0.001552
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	B.1.478	0.035294
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	B.1.543	0.03
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	B.1.568	0.003333
ORF1ab/nsp3	1557	A1557A	gcC	gcT	3	3	B.1.575	0.00091
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	1557	A1557del	GCC	---	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	3	3	P.1	0.000047
ORF1ab/nsp3	1557	A1557F	GCc	TTc	2	2		0.111111
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2		0.111111
ORF1ab/nsp3	1557	A1557F	GCc	TTc	2	2	All	0
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.106	0.00067
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.110	0.000225
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.113	0.000285
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.20	0.000078
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	AY.20	0.000078
ORF1ab/nsp3	1557	A1557del	GCC	---	2	2	AY.25	0.000012
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	AY.26	0.000057
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	2	AY.35	0.000233
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	2	AY.35	0.000233
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	AY.36	0.000296
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	AY.39.1	0.000079
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	AY.4.2	0.000043
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.42	0.00008
ORF1ab/nsp3	1557	A1557del	GCC	---	2	2	AY.43	0.000009
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	AY.5.3	0.000675
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	2	2	AY.61	0.00021
ORF1ab/nsp3	1557	A1557del	GCC	---	2	2	AY.75	0.000112
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.86	0.00166
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	AY.9.2	0.000073
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	AY.92	0.000575
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	AY.94	0.000885
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	AY.99	0.002099
ORF1ab/nsp3	1557	A1557D	gCc	gAc	2	2	B.1	0.000018
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	2	2	B.1	0.000018
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	2	2	B.1	0.000018
ORF1ab/nsp3	1557	A1557G	gCc	gGc	2	2	B.1.1	0.000036
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	B.1.1.28	0.000622
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	B.1.1.37	0.000386
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	B.1.1.409	0.005666
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	2	B.1.1.519	0.00004
ORF1ab/nsp3	1557	A1557A	gcC	gcG	1	2	B.1.1.519	0.00004
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	1557	A1557A	gcC	gcA	2	2	B.1.111	0.00235
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.177.46	0.001837
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.177.82	0.000955
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	2	2	B.1.2	0.000018
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	B.1.210	0.004264
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	B.1.240	0.000431
ORF1ab/nsp3	1557	A1557A	gcC	gcA	2	2	B.1.243	0.000139
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	B.1.311	0.000549
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	B.1.36	0.000292
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.36.38	0.003284
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.396	0.001411
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	2	2	B.1.429	0.000047
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.560	0.009259
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.582	0.000981
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.1.614	0.25
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	B.6.6	0.001778
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	B.6.6	0.001778
ORF1ab/nsp3	1557	A1557V	gCc	gTc	2	2	C.36.3	0.001134
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	P.1.16	0.000748
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	2	2	Q.1	0.000253
ORF1ab/nsp3	1557	A1557A	gcC	gcT	2	2	Q.1	0.000253
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	A.25	0.018182
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	A.3	0.002096
ORF1ab/nsp3	1557	A1557I	GCc	ATc	1	1	All	0
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AP.1	0.001502
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.1	0.000396
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	AY.1	0.000396
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.101	0.00049
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.102	0.000027
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.103	0.000006
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.105	0.000643
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.107	0.000466
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.108	0.001103
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.110	0.000113
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.111	0.000183
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.113	0.000142
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.114	0.000231
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.116	0.000287
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.117	0.000085
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.117	0.000085
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.117	0.000085
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.118	0.000063
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.12	0.000316
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.12	0.000316
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.120	0.000037
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.120	0.000037
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.120.2	0.001285
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.121	0.000135
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	1	1	AY.16	0.00038
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.16	0.00038
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.25	0.000006
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	1	1	AY.25	0.000006
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.27	0.000065
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.28	0.00189
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.29.1	0.000221
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.3	0.00001
ORF1ab/nsp3	1557	A1557del2	gCC	g--	1	1	AY.3	0.00001
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.3.1	0.000085
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.33	0.000067
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.33	0.000067
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1557	A1557G	gCc	gGc	1	1	AY.4	0.000002
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.4	0.000002
ORF1ab/nsp3	1557	A1557del2	gCC	g--	1	1	AY.4	0.000002
ORF1ab/nsp3	1557	A1557D	gCc	gAc	1	1	AY.4	0.000002
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.4.2.1	0.000149
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.4.3	0.000842
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.4.4	0.000409
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.42	0.00004
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.42	0.00004
ORF1ab/nsp3	1557	A1557D	gCc	gAc	1	1	AY.43	0.000004
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.44	0.000006
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	AY.45	0.000122
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.46	0.000104
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.46.2	0.000635
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.47	0.000031
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.5.4	0.000277
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.51	0.000909
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.55	0.000917
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.58	0.000907
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	AY.59	0.00053
ORF1ab/nsp3	1557	A1557del2	gCC	g--	1	1	AY.6	0.000041
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.6	0.000041
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	AY.61	0.000105
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.66	0.00107
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.69	0.000187
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.69	0.000187
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.74	0.000116
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.75	0.000056
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.75	0.000056
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.75.1	0.00018
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.77	0.001127
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.84	0.000437
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.85	0.000427
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.87	0.000833
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.9	0.000068
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.90	0.000684
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.91	0.00073
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.94	0.000443
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.97	0.001701
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.97	0.001701
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	AY.98	0.000079
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	AY.98	0.000079
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	AY.99.1	0.001553
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	AY.99.1	0.001553
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	AY.99.1	0.001553
ORF1ab/nsp3	1557	A1557del2	gCC	g--	1	1	B	0.000128
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.1	0.000018
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.170	0.001247
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.186	0.003436
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.231	0.003096
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.263	0.001558
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.294	0.001266
ORF1ab/nsp3	1557	A1557del1	gcC	gc-	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	1557	A1557del1	gcC	gc-	1	1	B.1.1.315	0.008475
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.346	0.029412
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.1.369	0.000446
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.1.47	0.005348
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.1.485	0.016667
ORF1ab/nsp3	1557	A1557A	gcC	gcA	1	1	B.1.1.51	0.001718
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1557	A1557I	GCc	ATc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.139	0.000733
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.146	0.004237
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.160	0.000031
ORF1ab/nsp3	1557	A1557D	gCc	gAc	1	1	B.1.160	0.000031
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.160	0.000031
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.160.29	0.004219
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.161	0.017241
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.177	0.000013
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	B.1.177	0.000013
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	1	1	B.1.177	0.000013
ORF1ab/nsp3	1557	A1557D	gCc	gAc	1	1	B.1.177.23	0.003236
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.177.26	0.006993
ORF1ab/nsp3	1557	A1557P	Gcc	Ccc	1	1	B.1.177.32	0.00135
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.177.4	0.000211
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.177.43	0.001477
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.177.63	0.002703
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.177.7	0.000165
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.177.81	0.000189
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	B.1.2	0.000009
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.2	0.000009
ORF1ab/nsp3	1557	A1557D	gCc	gAc	1	1	B.1.2	0.000009
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.206	0.000816
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.214	0.003663
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.221	0.000071
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.23	0.006061
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.234	0.000132
ORF1ab/nsp3	1557	A1557del2	gCC	g--	1	1	B.1.243	0.00007
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.243	0.00007
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.258	0.000067
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.258.14	0.00098
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.258.16	0.001637
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.258.3	0.001675
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	B.1.265	0.001271
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.274	0.011905
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.311	0.000275
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	1	1	B.1.326	0.007576
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.349	0.000715
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.351	0.00003
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.351	0.00003
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.355	0.011111
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.36	0.000146
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	1	1	B.1.36.10	0.004785
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.36.10	0.004785
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.362	0.001541
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.390	0.010638
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.416	0.001269
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.416	0.001269
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.416.1	0.001563
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.427	0.00005
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.456	0.003268
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.468	0.005714
ORF1ab/nsp3	1557	A1557del1	gCc	g-c	1	1	B.1.468	0.005714
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.525	0.000113
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.526	0.000024
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.537	0.02
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.561	0.000397
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.564	0.000426
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.595	0.000261
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.595	0.000261
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.596.1	0.009346
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.1.605	0.005952
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.610	0.003546
ORF1ab/nsp3	1557	A1557del1	gCC	g-A	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.623	0.000536
ORF1ab/nsp3	1557	A1557A	gcC	gcG	1	1	B.1.636	0.006711
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	B.1.637	0.000073
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	B.1.637	0.000073
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	B.34	0.013699
ORF1ab/nsp3	1557	A1557T	Gcc	Acc	1	1	B.6	0.00091
ORF1ab/nsp3	1557	A1557D	gCC	gAT	1	1	C.35	0.000774
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	C.36.3	0.000567
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	C.4	0.01
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	D.2	0.000075
ORF1ab/nsp3	1557	A1557A	gcC	gcT	1	1	P.1.15	0.000232
ORF1ab/nsp3	1557	A1557V	gCc	gTc	1	1	P.1.17	0.000162
ORF1ab/nsp3	1557	A1557del	GCC	---	1	1	Q.8	0.000165
ORF1ab/nsp3	1557	A1557S	Gcc	Tcc	1	1	S.1	0.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.