CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1552 | N1552N | N2370N | syn | aaT | aaC | 569 | 569 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552K | N2370K | nonsyn | aaT | aaG | 97 | 89 | 0.917526 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552K | N2370K | nonsyn | aaT | aaA | 97 | 8 | 0.0824742 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552S | N2370S | nonsyn | aAt | aGt | 88 | 88 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552del | N2370del | del | AAT | --- | 39 | 39 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552T | N2370T | nonsyn | aAt | aCt | 22 | 22 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552Y | N2370Y | nonsyn | Aat | Tat | 7 | 7 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552del1 | N2370del1 | del | aaT | aa- | 5 | 2 | 0.4 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552del1 | N2370del1 | del | Aat | -at | 5 | 2 | 0.4 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552del1 | N2370del1 | del | AaT | -aC | 5 | 1 | 0.2 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552D | N2370D | nonsyn | Aat | Gat | 3 | 3 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552H | N2370H | nonsyn | Aat | Cat | 3 | 2 | 0.666667 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552H | N2370H | nonsyn | AaT | CaC | 3 | 1 | 0.333333 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552I | N2370I | nonsyn | aAt | aTt | 2 | 2 | 1 | 7373-7375 |
ORF1ab/nsp3 | 1552 | N1552R | N2370R | nonsyn | AAT | CGA | 1 | 1 | 1 | 7373-7375 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 569 | 569 | All | 0.000109 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 187 | 187 | B.1.1.7 | 0.000167 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 89 | 97 | All | 0.000017 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 8 | 97 | All | 0.000002 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 88 | 88 | All | 0.000017 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 57 | 57 | AY.43 | 0.000253 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 46 | 46 | AY.108 | 0.050717 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 44 | 45 | B.1.2 | 0.000387 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 1 | 45 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 39 | 39 | All | 0.000007 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 34 | 34 | B.1.1.519 | 0.00135 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 32 | 32 | B.1.409 | 0.025 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 23 | 23 | AY.98 | 0.001817 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 18 | 18 | B.1.1.312 | 0.034417 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 10 | 10 | P.1.7 | 0.003193 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 1552 | N1552Y | Aat | Tat | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 5 | 5 | A.30 | 0.714286 |
ORF1ab/nsp3 | 1552 | N1552del1 | aaT | aa- | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552del1 | Aat | -at | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552del1 | AaT | -aC | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1552 | N1552D | Aat | Gat | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1552 | N1552H | Aat | Cat | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552H | AaT | CaC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1552 | N1552Y | Aat | Tat | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp3 | 1552 | N1552I | aAt | aTt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1552 | N1552D | Aat | Gat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1552 | N1552del1 | Aat | -at | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1552 | N1552del1 | aaT | aa- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 2 | 2 | W.4 | 0.002703 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1552 | N1552D | Aat | Gat | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1552 | N1552R | AAT | CGA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1552 | N1552H | AaT | CaC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1552 | N1552H | Aat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552I | aAt | aTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552H | Aat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552R | AAT | CGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552Y | Aat | Tat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1552 | N1552I | aAt | aTt | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1552 | N1552del1 | AaT | -aC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1552 | N1552Y | Aat | Tat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1552 | N1552Y | Aat | Tat | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1552 | N1552T | aAt | aCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1552 | N1552K | aaT | aaA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1552 | N1552N | aaT | aaC | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1552 | N1552S | aAt | aGt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1552 | N1552del | AAT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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