CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1552

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31552N1552NN2370NsynaaTaaC56956917373-7375
ORF1ab/nsp31552N1552KN2370KnonsynaaTaaG97890.9175267373-7375
ORF1ab/nsp31552N1552KN2370KnonsynaaTaaA9780.08247427373-7375
ORF1ab/nsp31552N1552SN2370SnonsynaAtaGt888817373-7375
ORF1ab/nsp31552N1552delN2370deldelAAT---393917373-7375
ORF1ab/nsp31552N1552TN2370TnonsynaAtaCt222217373-7375
ORF1ab/nsp31552N1552YN2370YnonsynAatTat7717373-7375
ORF1ab/nsp31552N1552del1N2370del1delaaTaa-520.47373-7375
ORF1ab/nsp31552N1552del1N2370del1delAat-at520.47373-7375
ORF1ab/nsp31552N1552del1N2370del1delAaT-aC510.27373-7375
ORF1ab/nsp31552N1552DN2370DnonsynAatGat3317373-7375
ORF1ab/nsp31552N1552HN2370HnonsynAatCat320.6666677373-7375
ORF1ab/nsp31552N1552HN2370HnonsynAaTCaC310.3333337373-7375
ORF1ab/nsp31552N1552IN2370InonsynaAtaTt2217373-7375
ORF1ab/nsp31552N1552RN2370RnonsynAATCGA1117373-7375

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31552N1552NaaTaaC569569All0.000109
ORF1ab/nsp31552N1552NaaTaaC187187B.1.1.70.000167
ORF1ab/nsp31552N1552KaaTaaG8997All0.000017
ORF1ab/nsp31552N1552KaaTaaA897All0.000002
ORF1ab/nsp31552N1552SaAtaGt8888All0.000017
ORF1ab/nsp31552N1552NaaTaaC5757AY.430.000253
ORF1ab/nsp31552N1552NaaTaaC4646AY.1080.050717
ORF1ab/nsp31552N1552KaaTaaG4445B.1.20.000387
ORF1ab/nsp31552N1552KaaTaaA145B.1.20.000009
ORF1ab/nsp31552N1552delAAT---3939All0.000007
ORF1ab/nsp31552N1552NaaTaaC3434B.1.1.5190.00135
ORF1ab/nsp31552N1552NaaTaaC3232B.1.4090.025
ORF1ab/nsp31552N1552NaaTaaC2323AY.980.001817
ORF1ab/nsp31552N1552TaAtaCt2222All0.000004
ORF1ab/nsp31552N1552NaaTaaC2121AY.40.000033
ORF1ab/nsp31552N1552SaAtaGt1818B.1.1.3120.034417
ORF1ab/nsp31552N1552NaaTaaC1818B.1.617.20.000068
ORF1ab/nsp31552N1552SaAtaGt1717B.1.1.70.000015
ORF1ab/nsp31552N1552NaaTaaC1515AY.250.00009
ORF1ab/nsp31552N1552NaaTaaC1414B.1.1770.000184
ORF1ab/nsp31552N1552KaaTaaG1313AY.470.000404
ORF1ab/nsp31552N1552NaaTaaC1313B.10.000119
ORF1ab/nsp31552N1552NaaTaaC1010P.1.70.003193
ORF1ab/nsp31552N1552delAAT---99B.1.1.70.000008
ORF1ab/nsp31552N1552KaaTaaG88AY.98.10.000387
ORF1ab/nsp31552N1552YAatTat77All0.000001
ORF1ab/nsp31552N1552NaaTaaC77AY.4.20.000152
ORF1ab/nsp31552N1552NaaTaaC77B.1.10.000127
ORF1ab/nsp31552N1552SaAtaGt77B.1.617.20.000026
ORF1ab/nsp31552N1552SaAtaGt66AY.40.000009
ORF1ab/nsp31552N1552KaaTaaG55A.300.714286
ORF1ab/nsp31552N1552del1aaTaa-25All0
ORF1ab/nsp31552N1552del1Aat-at25All0
ORF1ab/nsp31552N1552del1AaT-aC15All0
ORF1ab/nsp31552N1552NaaTaaC55AY.1030.000031
ORF1ab/nsp31552N1552SaAtaGt55AY.480.002326
ORF1ab/nsp31552N1552NaaTaaC44AY.1210.000541
ORF1ab/nsp31552N1552SaAtaGt44AY.30.00004
ORF1ab/nsp31552N1552TaAtaCt44AY.40.000006
ORF1ab/nsp31552N1552delAAT---44B.10.000037
ORF1ab/nsp31552N1552TaAtaCt44B.1.1.70.000004
ORF1ab/nsp31552N1552NaaTaaC44B.1.258.170.000416
ORF1ab/nsp31552N1552NaaTaaC44B.1.5250.000453
ORF1ab/nsp31552N1552SaAtaGt44B.1.617.10.000516
ORF1ab/nsp31552N1552NaaTaaC44B.1.6280.001409
ORF1ab/nsp31552N1552NaaTaaC44P.10.000063
ORF1ab/nsp31552N1552DAatGat33All0.000001
ORF1ab/nsp31552N1552HAatCat23All0
ORF1ab/nsp31552N1552HAaTCaC13All0
ORF1ab/nsp31552N1552SaAtaGt33AY.200.000117
ORF1ab/nsp31552N1552KaaTaaG33AY.250.000018
ORF1ab/nsp31552N1552SaAtaGt33AY.290.000047
ORF1ab/nsp31552N1552KaaTaaG33AY.40.000005
ORF1ab/nsp31552N1552NaaTaaC33AY.50.000062
ORF1ab/nsp31552N1552TaAtaCt33AZ.20.002463
ORF1ab/nsp31552N1552KaaTaaA33B.10.000027
ORF1ab/nsp31552N1552YAatTat33B.1.1.70.000003
ORF1ab/nsp31552N1552NaaTaaC33B.1.177.440.001557
ORF1ab/nsp31552N1552NaaTaaC33B.1.20.000026
ORF1ab/nsp31552N1552NaaTaaC33B.1.2580.0002
ORF1ab/nsp31552N1552NaaTaaC22A.20.001324
ORF1ab/nsp31552N1552IaAtaTt22All0
ORF1ab/nsp31552N1552NaaTaaC22AY.30.00002
ORF1ab/nsp31552N1552DAatGat22AY.430.000009
ORF1ab/nsp31552N1552NaaTaaC22AY.5.40.000553
ORF1ab/nsp31552N1552delAAT---22AY.750.000112
ORF1ab/nsp31552N1552KaaTaaG22B.1.1.70.000002
ORF1ab/nsp31552N1552del1Aat-at22B.1.20.000018
ORF1ab/nsp31552N1552SaAtaGt22B.1.2580.000133
ORF1ab/nsp31552N1552NaaTaaC22B.1.360.000292
ORF1ab/nsp31552N1552KaaTaaG22B.1.3690.00057
ORF1ab/nsp31552N1552NaaTaaC22B.1.4330.00639
ORF1ab/nsp31552N1552SaAtaGt22B.1.5250.000226
ORF1ab/nsp31552N1552NaaTaaC22B.1.5260.000047
ORF1ab/nsp31552N1552NaaTaaC22B.1.5650.001621
ORF1ab/nsp31552N1552NaaTaaC22B.1.5950.000522
ORF1ab/nsp31552N1552del1aaTaa-22B.1.617.20.000008
ORF1ab/nsp31552N1552delAAT---22B.1.617.20.000008
ORF1ab/nsp31552N1552KaaTaaA12B.1.617.20.000004
ORF1ab/nsp31552N1552KaaTaaG12B.1.617.20.000004
ORF1ab/nsp31552N1552NaaTaaC22W.40.002703
ORF1ab/nsp31552N1552KaaTaaA11A.2.40.003367
ORF1ab/nsp31552N1552DAatGat11A.2.50.000499
ORF1ab/nsp31552N1552TaAtaCt11AE.80.000489
ORF1ab/nsp31552N1552RAATCGA11All0
ORF1ab/nsp31552N1552HAaTCaC11AY.1030.000006
ORF1ab/nsp31552N1552delAAT---11AY.1030.000006
ORF1ab/nsp31552N1552TaAtaCt11AY.1030.000006
ORF1ab/nsp31552N1552delAAT---11AY.1130.000142
ORF1ab/nsp31552N1552NaaTaaC11AY.1150.005208
ORF1ab/nsp31552N1552SaAtaGt11AY.1200.000037
ORF1ab/nsp31552N1552delAAT---11AY.120.20.001285
ORF1ab/nsp31552N1552KaaTaaG11AY.200.000039
ORF1ab/nsp31552N1552NaaTaaC11AY.230.00007
ORF1ab/nsp31552N1552delAAT---11AY.250.000006
ORF1ab/nsp31552N1552SaAtaGt11AY.250.000006
ORF1ab/nsp31552N1552NaaTaaC11AY.270.000065
ORF1ab/nsp31552N1552KaaTaaG11AY.30.00001
ORF1ab/nsp31552N1552TaAtaCt11AY.30.00001
ORF1ab/nsp31552N1552NaaTaaC11AY.300.000396
ORF1ab/nsp31552N1552NaaTaaC11AY.330.000067
ORF1ab/nsp31552N1552NaaTaaC11AY.360.000148
ORF1ab/nsp31552N1552KaaTaaG11AY.39.10.00004
ORF1ab/nsp31552N1552delAAT---11AY.420.00004
ORF1ab/nsp31552N1552NaaTaaC11AY.420.00004
ORF1ab/nsp31552N1552HAatCat11AY.430.000004
ORF1ab/nsp31552N1552delAAT---11AY.430.000004
ORF1ab/nsp31552N1552KaaTaaG11AY.440.000006
ORF1ab/nsp31552N1552IaAtaTt11AY.440.000006
ORF1ab/nsp31552N1552delAAT---11AY.440.000006
ORF1ab/nsp31552N1552SaAtaGt11AY.440.000006
ORF1ab/nsp31552N1552NaaTaaC11AY.440.000006
ORF1ab/nsp31552N1552SaAtaGt11AY.450.000122
ORF1ab/nsp31552N1552NaaTaaC11AY.460.000104
ORF1ab/nsp31552N1552SaAtaGt11AY.460.000104
ORF1ab/nsp31552N1552NaaTaaC11AY.46.50.000198
ORF1ab/nsp31552N1552delAAT---11AY.46.60.000072
ORF1ab/nsp31552N1552NaaTaaC11AY.46.60.000072
ORF1ab/nsp31552N1552NaaTaaC11AY.470.000031
ORF1ab/nsp31552N1552SaAtaGt11AY.470.000031
ORF1ab/nsp31552N1552KaaTaaG11AY.50.000021
ORF1ab/nsp31552N1552SaAtaGt11AY.60.000041
ORF1ab/nsp31552N1552delAAT---11AY.660.00107
ORF1ab/nsp31552N1552TaAtaCt11AY.70.000196
ORF1ab/nsp31552N1552SaAtaGt11AY.710.000475
ORF1ab/nsp31552N1552NaaTaaC11AY.750.000056
ORF1ab/nsp31552N1552delAAT---11AY.90.000068
ORF1ab/nsp31552N1552TaAtaCt11B.10.000009
ORF1ab/nsp31552N1552HAatCat11B.10.000009
ORF1ab/nsp31552N1552RAATCGA11B.10.000009
ORF1ab/nsp31552N1552YAatTat11B.1.10.000018
ORF1ab/nsp31552N1552TaAtaCt11B.1.10.000018
ORF1ab/nsp31552N1552IaAtaTt11B.1.1.1710.003676
ORF1ab/nsp31552N1552delAAT---11B.1.1.2210.010101
ORF1ab/nsp31552N1552NaaTaaC11B.1.1.2220.000204
ORF1ab/nsp31552N1552KaaTaaA11B.1.1.250.000569
ORF1ab/nsp31552N1552NaaTaaC11B.1.1.2770.000759
ORF1ab/nsp31552N1552NaaTaaC11B.1.1.3720.000689
ORF1ab/nsp31552N1552delAAT---11B.1.1.4480.002033
ORF1ab/nsp31552N1552delAAT---11B.1.1.460.004367
ORF1ab/nsp31552N1552del1AaT-aC11B.1.1.70.000001
ORF1ab/nsp31552N1552YAatTat11B.1.1600.000031
ORF1ab/nsp31552N1552SaAtaGt11B.1.1600.000031
ORF1ab/nsp31552N1552TaAtaCt11B.1.1600.000031
ORF1ab/nsp31552N1552delAAT---11B.1.1610.017241
ORF1ab/nsp31552N1552TaAtaCt11B.1.1770.000013
ORF1ab/nsp31552N1552SaAtaGt11B.1.1770.000013
ORF1ab/nsp31552N1552delAAT---11B.1.20.000009
ORF1ab/nsp31552N1552TaAtaCt11B.1.20.000009
ORF1ab/nsp31552N1552YAatTat11B.1.20.000009
ORF1ab/nsp31552N1552NaaTaaC11B.1.2060.000816
ORF1ab/nsp31552N1552KaaTaaG11B.1.2220.001692
ORF1ab/nsp31552N1552SaAtaGt11B.1.2340.000132
ORF1ab/nsp31552N1552NaaTaaC11B.1.2340.000132
ORF1ab/nsp31552N1552delAAT---11B.1.2580.000067
ORF1ab/nsp31552N1552delAAT---11B.1.258.160.001637
ORF1ab/nsp31552N1552NaaTaaC11B.1.3110.000275
ORF1ab/nsp31552N1552SaAtaGt11B.1.3510.00003
ORF1ab/nsp31552N1552NaaTaaC11B.1.3510.00003
ORF1ab/nsp31552N1552delAAT---11B.1.3510.00003
ORF1ab/nsp31552N1552KaaTaaG11B.1.3510.00003
ORF1ab/nsp31552N1552NaaTaaC11B.1.351.30.000876
ORF1ab/nsp31552N1552TaAtaCt11B.1.351.30.000876
ORF1ab/nsp31552N1552NaaTaaC11B.1.416.10.001563
ORF1ab/nsp31552N1552SaAtaGt11B.1.4270.00005
ORF1ab/nsp31552N1552delAAT---11B.1.5610.000397
ORF1ab/nsp31552N1552YAatTat11B.1.5890.007576
ORF1ab/nsp31552N1552SaAtaGt11B.1.5960.000087
ORF1ab/nsp31552N1552TaAtaCt11B.1.5960.000087
ORF1ab/nsp31552N1552delAAT---11B.1.6210.000089
ORF1ab/nsp31552N1552KaaTaaG11B.1.6210.000089
ORF1ab/nsp31552N1552SaAtaGt11B.1.6210.000089
ORF1ab/nsp31552N1552NaaTaaC11B.1.6210.000089
ORF1ab/nsp31552N1552NaaTaaC11B.400.000364
ORF1ab/nsp31552N1552NaaTaaC11C.160.00106
ORF1ab/nsp31552N1552delAAT---11C.350.000774
ORF1ab/nsp31552N1552NaaTaaC11C.370.000116
ORF1ab/nsp31552N1552NaaTaaC11D.20.000075
ORF1ab/nsp31552N1552KaaTaaA11P.10.000016
ORF1ab/nsp31552N1552SaAtaGt11P.10.000016
ORF1ab/nsp31552N1552NaaTaaC11P.1.150.000232
ORF1ab/nsp31552N1552NaaTaaC11P.1.20.001156
ORF1ab/nsp31552N1552NaaTaaC11Q.10.000126
ORF1ab/nsp31552N1552SaAtaGt11Q.10.000126
ORF1ab/nsp31552N1552delAAT---11Q.80.000165