CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1547 | M1547I | M2365I | nonsyn | atG | atT | 3938 | 3646 | 0.925851 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547I | M2365I | nonsyn | atG | atA | 3938 | 259 | 0.0657694 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547I | M2365I | nonsyn | atG | atC | 3938 | 33 | 0.00837989 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547V | M2365V | nonsyn | Atg | Gtg | 941 | 941 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547del | M2365del | del | ATG | --- | 69 | 69 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547T | M2365T | nonsyn | aTg | aCg | 52 | 51 | 0.980769 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547T | M2365T | nonsyn | aTG | aCT | 52 | 1 | 0.0192308 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547L | M2365L | nonsyn | Atg | Ctg | 11 | 7 | 0.636364 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547L | M2365L | nonsyn | Atg | Ttg | 11 | 4 | 0.363636 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547K | M2365K | nonsyn | aTg | aAg | 7 | 7 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547R | M2365R | nonsyn | aTg | aGg | 3 | 3 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547del1 | M2365del1 | del | Atg | -tg | 3 | 2 | 0.666667 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547del1 | M2365del1 | del | atG | at- | 3 | 1 | 0.333333 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547G | M2365G | nonsyn | ATG | GGC | 1 | 1 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547S | M2365S | nonsyn | aTG | aGC | 1 | 1 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547F | M2365F | nonsyn | AtG | TtT | 1 | 1 | 1 | 7358-7360 |
ORF1ab/nsp3 | 1547 | M1547del2 | M2365del2 | del | aTG | a-- | 1 | 1 | 1 | 7358-7360 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3646 | 3938 | All | 0.000697 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 259 | 3938 | All | 0.00005 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 33 | 3938 | All | 0.000006 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 941 | 941 | All | 0.00018 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 888 | 898 | B.1.1.7 | 0.000795 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 6 | 898 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 4 | 898 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 753 | 765 | AY.4 | 0.001172 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 11 | 765 | AY.4 | 0.000017 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 765 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 388 | 388 | B.1.1.284 | 0.041671 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 193 | 193 | B.1.448 | 0.506562 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 173 | 175 | AY.43 | 0.000766 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 175 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 175 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 135 | 136 | B.1.596 | 0.011764 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 136 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 118 | 119 | B.1.427 | 0.005959 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 119 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 109 | 115 | B.1.617.2 | 0.00041 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 6 | 115 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 101 | 101 | AY.103 | 0.000627 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 94 | 94 | B.1.577 | 0.064605 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 79 | 87 | AY.44 | 0.000481 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 8 | 87 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 86 | 86 | B.1.241 | 0.069805 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 77 | 77 | B.1.1.7 | 0.000069 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 69 | 69 | All | 0.000013 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 69 | 69 | AY.20 | 0.002682 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 66 | 66 | B.1.2 | 0.000581 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 56 | 62 | B.1.351 | 0.001665 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 3 | 62 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 3 | 62 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 43 | 58 | AY.25 | 0.000259 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 13 | 58 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 2 | 58 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 58 | 58 | B.1.525 | 0.006563 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 54 | 54 | AY.119 | 0.001907 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 51 | 52 | All | 0.00001 |
ORF1ab/nsp3 | 1547 | M1547T | aTG | aCT | 1 | 52 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 46 | 46 | AY.99.2 | 0.004239 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 44 | 44 | P.1 | 0.000693 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 38 | 39 | P.1 | 0.000599 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 39 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 38 | 38 | B.1.177.86 | 0.006971 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 37 | 38 | B.1.617.1 | 0.004772 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 38 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 34 | 34 | B.1.570 | 0.1 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 24 | 32 | AY.103 | 0.000149 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 6 | 32 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 2 | 32 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 32 | 32 | AY.4.1 | 0.023599 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 24 | 31 | B.1 | 0.00022 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 5 | 31 | B.1 | 0.000046 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 2 | 31 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 25 | 31 | B.1.1 | 0.000454 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 5 | 31 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 31 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 27 | 27 | AY.5 | 0.000558 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 26 | 26 | AY.4.4 | 0.010638 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 22 | 22 | AY.39 | 0.000544 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 19 | 20 | B.1.2 | 0.000167 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 20 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 16 | 19 | AY.3 | 0.000159 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 3 | 19 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 19 | 19 | B.1.1.519 | 0.000755 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 13 | 17 | P.1.14 | 0.000621 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 4 | 17 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 10 | 16 | AY.33 | 0.000668 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 6 | 16 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 16 | 16 | B.1.1.348 | 0.012739 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 15 | 15 | B.1.1.220 | 0.027881 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 14 | 15 | B.1.526 | 0.000329 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 15 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 13 | 14 | AY.42 | 0.000523 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 14 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 14 | 14 | AY.61 | 0.001467 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 14 | 14 | B.1.1.70 | 0.004775 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 14 | 14 | B.1.279 | 0.007191 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 9 | 13 | AY.36 | 0.001334 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 13 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 13 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 12 | 12 | AY.100 | 0.000552 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 12 | 12 | AY.64 | 0.007143 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ctg | 7 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ttg | 4 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 10 | 11 | AY.4.2 | 0.000217 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 11 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 7 | 11 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 4 | 11 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 9 | 11 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 2 | 11 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 8 | 10 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 10 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 10 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 9 | 9 | AY.62 | 0.003922 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 9 | 9 | AY.94 | 0.003984 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 8 | 8 | B.1.177.21 | 0.000612 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 8 | 8 | P.1.15 | 0.001859 |
ORF1ab/nsp3 | 1547 | M1547K | aTg | aAg | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 7 | AY.23 | 0.000349 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 2 | 7 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 6 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 6 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 6 | AY.30 | 0.001979 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 6 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 6 | 6 | AY.7.1 | 0.000676 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ctg | 4 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ttg | 2 | 6 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1547 | M1547T | aTG | aCT | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 5 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 5 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | AY.12 | 0.001264 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | AY.51 | 0.003636 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 4 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 2 | 4 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 2 | 4 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 4 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | B.1.1.333 | 0.004306 |
ORF1ab/nsp3 | 1547 | M1547K | aTg | aAg | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | B.1.177.60 | 0.000874 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 4 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 2 | 4 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 4 | 4 | D.5 | 0.0199 |
ORF1ab/nsp3 | 1547 | M1547R | aTg | aGg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1547 | M1547del1 | Atg | -tg | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547del1 | atG | at- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 3 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 3 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | B.1.1.291 | 0.002227 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | B.1.1.374 | 0.007126 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 3 | 3 | B.1.36.37 | 0.008333 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 2 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 2 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 2 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1547 | M1547del1 | Atg | -tg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.1.163 | 0.015267 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.408 | 0.00738 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ttg | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1547 | M1547F | AtG | TtT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ctg | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1547 | M1547F | AtG | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547G | ATG | GGC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547S | aTG | aGC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547del2 | aTG | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ctg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ctg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1547 | M1547L | Atg | Ttg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1547 | M1547R | aTg | aGg | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1547 | M1547K | aTg | aAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1547 | M1547K | aTg | aAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1547 | M1547G | ATG | GGC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1547 | M1547R | aTg | aGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.1.90 | 0.1 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.161 | 0.017241 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1547 | M1547del1 | atG | at- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1547 | M1547R | aTg | aGg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1547 | M1547T | aTg | aCg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atA | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 1547 | M1547K | aTg | aAg | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | B.4.8 | 0.071429 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1547 | M1547S | aTG | aGC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | L.1 | 0.001905 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1547 | M1547V | Atg | Gtg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1547 | M1547del2 | aTG | a-- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1547 | M1547del | ATG | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1547 | M1547I | atG | atT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|