CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1546

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31546L1546FL2364FnonsynCttTtt32532517355-7357
ORF1ab/nsp31546L1546LL2364LsynctTctC2332000.8583697355-7357
ORF1ab/nsp31546L1546LL2364LsynctTctG233280.1201727355-7357
ORF1ab/nsp31546L1546LL2364LsynctTctA23350.02145927355-7357
ORF1ab/nsp31546L1546IL2364InonsynCttAtt81800.9876547355-7357
ORF1ab/nsp31546L1546IL2364InonsynCtTAtA8110.01234577355-7357
ORF1ab/nsp31546L1546delL2364deldelCTT---686817355-7357
ORF1ab/nsp31546L1546PL2364PnonsyncTtcCt1090.97355-7357
ORF1ab/nsp31546L1546PL2364PnonsyncTTcCG1010.17355-7357
ORF1ab/nsp31546L1546RL2364RnonsyncTtcGt4417355-7357
ORF1ab/nsp31546L1546HL2364HnonsyncTtcAt3317355-7357
ORF1ab/nsp31546L1546del1L2364del1delctTct-320.6666677355-7357
ORF1ab/nsp31546L1546del1L2364del1delcTtc-t310.3333337355-7357
ORF1ab/nsp31546L1546SL2364SnonsynCTtTCt210.57355-7357
ORF1ab/nsp31546L1546SL2364SnonsynCTTAGC210.57355-7357
ORF1ab/nsp31546L1546XL2364XnonsynCTTTAA1117355-7357
ORF1ab/nsp31546L1546YL2364YnonsynCTtTAt1117355-7357
ORF1ab/nsp31546L1546VL2364VnonsynCttGtt1117355-7357

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31546L1546FCttTtt325325All0.000062
ORF1ab/nsp31546L1546LctTctC200233All0.000038
ORF1ab/nsp31546L1546LctTctG28233All0.000005
ORF1ab/nsp31546L1546LctTctA5233All0.000001
ORF1ab/nsp31546L1546ICttAtt8081All0.000015
ORF1ab/nsp31546L1546ICtTAtA181All0
ORF1ab/nsp31546L1546delCTT---6868All0.000013
ORF1ab/nsp31546L1546LctTctC5656B.1.1.1231
ORF1ab/nsp31546L1546ICttAtt5555AY.50.001136
ORF1ab/nsp31546L1546FCttTtt4040AY.1030.000248
ORF1ab/nsp31546L1546FCttTtt4040AY.40.000062
ORF1ab/nsp31546L1546FCttTtt3434B.1.617.20.000128
ORF1ab/nsp31546L1546LctTctC2727AY.440.000164
ORF1ab/nsp31546L1546LctTctG2626B.1.5610.010322
ORF1ab/nsp31546L1546FCttTtt1818AY.560.028892
ORF1ab/nsp31546L1546FCttTtt1717AY.1190.0006
ORF1ab/nsp31546L1546delCTT---1717B.1.1.70.000015
ORF1ab/nsp31546L1546FCttTtt1414AY.250.000084
ORF1ab/nsp31546L1546FCttTtt1414AY.430.000062
ORF1ab/nsp31546L1546FCttTtt1212AY.1020.000318
ORF1ab/nsp31546L1546LctTctC1212B.1.617.20.000045
ORF1ab/nsp31546L1546FCttTtt1111AY.390.000272
ORF1ab/nsp31546L1546LctTctC1111B.1.1.70.00001
ORF1ab/nsp31546L1546PcTtcCt910All0.000002
ORF1ab/nsp31546L1546PcTTcCG110All0
ORF1ab/nsp31546L1546LctTctC1010B.1.1.630.003858
ORF1ab/nsp31546L1546FCttTtt1010B.1.1.70.000009
ORF1ab/nsp31546L1546FCttTtt1010B.1.20.000088
ORF1ab/nsp31546L1546LctTctC88AY.30.00008
ORF1ab/nsp31546L1546LctTctC88AY.430.000035
ORF1ab/nsp31546L1546FCttTtt88AY.440.000049
ORF1ab/nsp31546L1546LctTctC77AY.1020.000186
ORF1ab/nsp31546L1546FCttTtt77AY.200.000272
ORF1ab/nsp31546L1546LctTctC77AY.40.000011
ORF1ab/nsp31546L1546delCTT---77AY.430.000031
ORF1ab/nsp31546L1546LctTctC77B.1.20.000062
ORF1ab/nsp31546L1546FCttTtt66AY.30.00006
ORF1ab/nsp31546L1546delCTT---66B.1.617.20.000023
ORF1ab/nsp31546L1546LctTctC66P.10.000095
ORF1ab/nsp31546L1546RcTtcGt44All0.000001
ORF1ab/nsp31546L1546FCttTtt44AY.1130.00057
ORF1ab/nsp31546L1546FCttTtt44AY.340.000388
ORF1ab/nsp31546L1546FCttTtt44AY.50.000083
ORF1ab/nsp31546L1546FCttTtt44AY.540.000381
ORF1ab/nsp31546L1546delCTT---44B.10.000037
ORF1ab/nsp31546L1546LctTctC44B.1.1.2720.020833
ORF1ab/nsp31546L1546FCttTtt44B.1.1.5190.000159
ORF1ab/nsp31546L1546FCttTtt44C.160.004242
ORF1ab/nsp31546L1546HcTtcAt33All0.000001
ORF1ab/nsp31546L1546del1ctTct-23All0
ORF1ab/nsp31546L1546del1cTtc-t13All0
ORF1ab/nsp31546L1546FCttTtt33AY.1110.000549
ORF1ab/nsp31546L1546LctTctC33AY.240.001293
ORF1ab/nsp31546L1546FCttTtt33AY.260.000085
ORF1ab/nsp31546L1546LctTctC33AY.46.60.000217
ORF1ab/nsp31546L1546FCttTtt33AY.470.000093
ORF1ab/nsp31546L1546FCttTtt33B.10.000027
ORF1ab/nsp31546L1546FCttTtt33B.1.1.2840.000322
ORF1ab/nsp31546L1546ICttAtt33B.1.1.70.000003
ORF1ab/nsp31546L1546FCttTtt33B.1.2580.0002
ORF1ab/nsp31546L1546FCttTtt33P.1.150.000697
ORF1ab/nsp31546L1546LctTctA220.111111
ORF1ab/nsp31546L1546SCTtTCt12All0
ORF1ab/nsp31546L1546SCTTAGC12All0
ORF1ab/nsp31546L1546FCttTtt22AY.1060.00067
ORF1ab/nsp31546L1546LctTctA22AY.200.000078
ORF1ab/nsp31546L1546FCttTtt22AY.230.000139
ORF1ab/nsp31546L1546ICttAtt22AY.290.000032
ORF1ab/nsp31546L1546FCttTtt22AY.330.000134
ORF1ab/nsp31546L1546FCttTtt22AY.39.10.000079
ORF1ab/nsp31546L1546LctTctC22AY.420.00008
ORF1ab/nsp31546L1546delCTT---22AY.420.00008
ORF1ab/nsp31546L1546ICttAtt22AY.440.000012
ORF1ab/nsp31546L1546LctTctC22AY.450.000243
ORF1ab/nsp31546L1546ICttAtt22AY.46.50.000397
ORF1ab/nsp31546L1546ICttAtt22B.10.000018
ORF1ab/nsp31546L1546del1ctTct-22B.10.000018
ORF1ab/nsp31546L1546LctTctC22B.10.000018
ORF1ab/nsp31546L1546LctTctA12B.1.10.000018
ORF1ab/nsp31546L1546LctTctC12B.1.10.000018
ORF1ab/nsp31546L1546HcTtcAt22B.1.1.70.000002
ORF1ab/nsp31546L1546RcTtcGt22B.1.160.90.014388
ORF1ab/nsp31546L1546LctTctC22B.1.1770.000026
ORF1ab/nsp31546L1546LctTctC22B.1.177.210.000153
ORF1ab/nsp31546L1546delCTT---22B.1.20.000018
ORF1ab/nsp31546L1546FCttTtt22B.1.2430.000139
ORF1ab/nsp31546L1546delCTT---22B.1.4970.00063
ORF1ab/nsp31546L1546LctTctC22B.1.617.10.000258
ORF1ab/nsp31546L1546FCttTtt22B.1.617.10.000258
ORF1ab/nsp31546L1546ICttAtt22B.1.617.20.000008
ORF1ab/nsp31546L1546FCttTtt110.055556
ORF1ab/nsp31546L1546FCttTtt11AD.20.000219
ORF1ab/nsp31546L1546ICttAtt11AF.10.037037
ORF1ab/nsp31546L1546YCTtTAt11All0
ORF1ab/nsp31546L1546VCttGtt11All0
ORF1ab/nsp31546L1546XCTTTAA11All0
ORF1ab/nsp31546L1546FCttTtt11AY.1000.000046
ORF1ab/nsp31546L1546ICttAtt11AY.1020.000027
ORF1ab/nsp31546L1546HcTtcAt11AY.1030.000006
ORF1ab/nsp31546L1546LctTctC11AY.1030.000006
ORF1ab/nsp31546L1546delCTT---11AY.1030.000006
ORF1ab/nsp31546L1546delCTT---11AY.1130.000142
ORF1ab/nsp31546L1546FCttTtt11AY.1180.000063
ORF1ab/nsp31546L1546FCttTtt11AY.1200.000037
ORF1ab/nsp31546L1546delCTT---11AY.120.20.001285
ORF1ab/nsp31546L1546FCttTtt11AY.1210.000135
ORF1ab/nsp31546L1546LctTctC11AY.160.00038
ORF1ab/nsp31546L1546FCttTtt11AY.23.10.000417
ORF1ab/nsp31546L1546FCttTtt11AY.240.000431
ORF1ab/nsp31546L1546ICttAtt11AY.250.000006
ORF1ab/nsp31546L1546delCTT---11AY.250.000006
ORF1ab/nsp31546L1546LctTctC11AY.290.000016
ORF1ab/nsp31546L1546ICttAtt11AY.30.00001
ORF1ab/nsp31546L1546delCTT---11AY.3.10.000085
ORF1ab/nsp31546L1546delCTT---11AY.330.000067
ORF1ab/nsp31546L1546LctTctC11AY.340.000097
ORF1ab/nsp31546L1546FCttTtt11AY.350.000233
ORF1ab/nsp31546L1546LctTctC11AY.360.000148
ORF1ab/nsp31546L1546LctTctC11AY.390.000025
ORF1ab/nsp31546L1546ICttAtt11AY.40.000002
ORF1ab/nsp31546L1546delCTT---11AY.40.000002
ORF1ab/nsp31546L1546FCttTtt11AY.4.20.000022
ORF1ab/nsp31546L1546delCTT---11AY.440.000006
ORF1ab/nsp31546L1546PcTtcCt11AY.440.000006
ORF1ab/nsp31546L1546FCttTtt11AY.450.000122
ORF1ab/nsp31546L1546PcTtcCt11AY.460.000104
ORF1ab/nsp31546L1546FCttTtt11AY.46.20.000635
ORF1ab/nsp31546L1546delCTT---11AY.46.60.000072
ORF1ab/nsp31546L1546LctTctC11AY.50.000021
ORF1ab/nsp31546L1546delCTT---11AY.50.000021
ORF1ab/nsp31546L1546FCttTtt11AY.5.30.000337
ORF1ab/nsp31546L1546delCTT---11AY.660.00107
ORF1ab/nsp31546L1546delCTT---11AY.750.000056
ORF1ab/nsp31546L1546ICttAtt11AY.880.000884
ORF1ab/nsp31546L1546delCTT---11AY.90.000068
ORF1ab/nsp31546L1546FCttTtt11AY.90.000068
ORF1ab/nsp31546L1546delCTT---11AY.9.20.000037
ORF1ab/nsp31546L1546LctTctG11AY.9.20.000037
ORF1ab/nsp31546L1546ICttAtt11AY.98.10.000048
ORF1ab/nsp31546L1546FCttTtt11AY.99.20.000092
ORF1ab/nsp31546L1546FCttTtt11B.1.10.000018
ORF1ab/nsp31546L1546delCTT---11B.1.10.000018
ORF1ab/nsp31546L1546ICttAtt11B.1.10.000018
ORF1ab/nsp31546L1546LctTctC11B.1.1.10.000327
ORF1ab/nsp31546L1546FCttTtt11B.1.1.10.000327
ORF1ab/nsp31546L1546FCttTtt11B.1.1.1530.001095
ORF1ab/nsp31546L1546delCTT---11B.1.1.2210.010101
ORF1ab/nsp31546L1546LctTctG11B.1.1.2220.000204
ORF1ab/nsp31546L1546delCTT---11B.1.1.3060.000438
ORF1ab/nsp31546L1546ICttAtt11B.1.1.3060.000438
ORF1ab/nsp31546L1546LctTctC11B.1.1.3160.000925
ORF1ab/nsp31546L1546FCttTtt11B.1.1.390.00051
ORF1ab/nsp31546L1546delCTT---11B.1.1.4480.002033
ORF1ab/nsp31546L1546delCTT---11B.1.1.460.004367
ORF1ab/nsp31546L1546delCTT---11B.1.1.5190.00004
ORF1ab/nsp31546L1546ICttAtt11B.1.1.5190.00004
ORF1ab/nsp31546L1546del1cTtc-t11B.1.1.70.000001
ORF1ab/nsp31546L1546SCTtTCt11B.1.1.70.000001
ORF1ab/nsp31546L1546XCTTTAA11B.1.1.70.000001
ORF1ab/nsp31546L1546PcTtcCt11B.1.1.70.000001
ORF1ab/nsp31546L1546FCttTtt11B.1.1460.004237
ORF1ab/nsp31546L1546FCttTtt11B.1.1600.000031
ORF1ab/nsp31546L1546LctTctC11B.1.1600.000031
ORF1ab/nsp31546L1546RcTtcGt11B.1.160.220.006757
ORF1ab/nsp31546L1546delCTT---11B.1.1610.017241
ORF1ab/nsp31546L1546FCttTtt11B.1.1770.000013
ORF1ab/nsp31546L1546FCttTtt11B.1.177.210.000076
ORF1ab/nsp31546L1546VCttGtt11B.1.20.000009
ORF1ab/nsp31546L1546PcTtcCt11B.1.20.000009
ORF1ab/nsp31546L1546RcTtcGt11B.1.2360.002053
ORF1ab/nsp31546L1546delCTT---11B.1.2580.000067
ORF1ab/nsp31546L1546delCTT---11B.1.3510.00003
ORF1ab/nsp31546L1546LctTctC11B.1.3510.00003
ORF1ab/nsp31546L1546ICtTAtA11B.1.3550.011111
ORF1ab/nsp31546L1546PcTtcCt11B.1.3550.011111
ORF1ab/nsp31546L1546LctTctC11B.1.36.80.001
ORF1ab/nsp31546L1546PcTtcCt11B.1.3690.000285
ORF1ab/nsp31546L1546FCttTtt11B.1.4270.00005
ORF1ab/nsp31546L1546PcTtcCt11B.1.4270.00005
ORF1ab/nsp31546L1546PcTtcCt11B.1.4280.00102
ORF1ab/nsp31546L1546FCttTtt11B.1.4290.000024
ORF1ab/nsp31546L1546LctTctC11B.1.4290.000024
ORF1ab/nsp31546L1546ICttAtt11B.1.438.10.000107
ORF1ab/nsp31546L1546FCttTtt11B.1.5250.000113
ORF1ab/nsp31546L1546delCTT---11B.1.5250.000113
ORF1ab/nsp31546L1546delCTT---11B.1.575.10.002439
ORF1ab/nsp31546L1546LctTctC11B.1.5950.000261
ORF1ab/nsp31546L1546ICttAtt11B.1.617.10.000129
ORF1ab/nsp31546L1546PcTtcCt11B.1.617.20.000004
ORF1ab/nsp31546L1546SCTTAGC11B.1.617.20.000004
ORF1ab/nsp31546L1546YCTtTAt11B.1.617.20.000004
ORF1ab/nsp31546L1546LctTctC11B.1.6210.000089
ORF1ab/nsp31546L1546delCTT---11B.1.6210.000089
ORF1ab/nsp31546L1546FCttTtt11B.1.6280.000352
ORF1ab/nsp31546L1546LctTctC11C.180.002591
ORF1ab/nsp31546L1546PcTTcCG11C.350.000774
ORF1ab/nsp31546L1546LctTctC11C.36.3.10.002717
ORF1ab/nsp31546L1546delCTT---11P.10.000016
ORF1ab/nsp31546L1546LctTctC11P.1.140.000048
ORF1ab/nsp31546L1546delCTT---11Q.80.000165