CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 154 | E154K | E972K | nonsyn | Gaa | Aaa | 545 | 545 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154A | E972A | nonsyn | gAa | gCa | 211 | 211 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154G | E972G | nonsyn | gAa | gGa | 155 | 155 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154E | E972E | syn | gaA | gaG | 128 | 128 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154D | E972D | nonsyn | gaA | gaC | 105 | 60 | 0.571429 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154D | E972D | nonsyn | gaA | gaT | 105 | 45 | 0.428571 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154V | E972V | nonsyn | gAa | gTa | 47 | 38 | 0.808511 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154V | E972V | nonsyn | gAA | gTT | 47 | 9 | 0.191489 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154X | E972X | nonsyn | Gaa | Taa | 33 | 33 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154del | E972del | del | GAA | --- | 32 | 32 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154Q | E972Q | nonsyn | Gaa | Caa | 16 | 16 | 1 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154del1 | E972del1 | del | gaA | ga- | 2 | 1 | 0.5 | 3179-3181 |
ORF1ab/nsp3 | 154 | E154del1 | E972del1 | del | Gaa | -aa | 2 | 1 | 0.5 | 3179-3181 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 545 | 545 | All | 0.000104 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 211 | 211 | All | 0.00004 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 155 | 155 | All | 0.00003 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 128 | 128 | All | 0.000024 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 120 | 120 | B.1.1.70 | 0.040928 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 60 | 105 | All | 0.000011 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 45 | 105 | All | 0.000009 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 96 | 96 | AD.2 | 0.02102 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 62 | 62 | A.16 | 1 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 50 | 50 | AY.39.1 | 0.001981 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 38 | 47 | All | 0.000007 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 9 | 47 | All | 0.000002 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 46 | 46 | B.1.460 | 0.821429 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 36 | 36 | B.1.1.7 | 0.000032 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 33 | 33 | All | 0.000006 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 32 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 23 | 29 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 6 | 29 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 24 | 24 | P.1 | 0.000378 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 15 | 21 | AY.103 | 0.000093 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 6 | 21 | AY.103 | 0.000037 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 21 | 21 | B.1.1.214 | 0.001165 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 20 | 20 | AY.5 | 0.000413 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 18 | 18 | B.1.36 | 0.002626 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 17 | 17 | B.1.595 | 0.004436 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 16 | 16 | All | 0.000003 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 16 | 16 | B.1.2 | 0.000141 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 14 | 14 | D.2 | 0.001051 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 9 | 10 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 1 | 10 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 3 | 7 | B.1 | 0.000027 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 6 | 6 | B.1.1.121 | 0.014563 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 5 | 5 | AY.73 | 0.003327 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 5 | 5 | B.1.1.315 | 0.042373 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 4 | 4 | B.1.1.163 | 0.030534 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 2 | 3 | B | 0.000256 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 3 | B | 0.000128 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | B.1.1.385 | 0.013393 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 3 | 3 | B.1.340 | 0.012876 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 154 | E154del1 | gaA | ga- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 154 | E154del1 | Gaa | -aa | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 154 | E154V | gAA | gTT | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 2 | 2 | B.1.569 | 0.028986 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.1.275 | 0.011236 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 154 | E154del1 | gaA | ga- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 154 | E154X | Gaa | Taa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 154 | E154del1 | Gaa | -aa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp3 | 154 | E154del | GAA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 154 | E154G | gAa | gGa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 154 | E154V | gAa | gTa | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 154 | E154E | gaA | gaG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 154 | E154Q | Gaa | Caa | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 154 | E154A | gAa | gCa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 154 | E154D | gaA | gaC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 154 | E154K | Gaa | Aaa | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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