CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 154

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3154E154KE972KnonsynGaaAaa54554513179-3181
ORF1ab/nsp3154E154AE972AnonsyngAagCa21121113179-3181
ORF1ab/nsp3154E154GE972GnonsyngAagGa15515513179-3181
ORF1ab/nsp3154E154EE972EsyngaAgaG12812813179-3181
ORF1ab/nsp3154E154DE972DnonsyngaAgaC105600.5714293179-3181
ORF1ab/nsp3154E154DE972DnonsyngaAgaT105450.4285713179-3181
ORF1ab/nsp3154E154VE972VnonsyngAagTa47380.8085113179-3181
ORF1ab/nsp3154E154VE972VnonsyngAAgTT4790.1914893179-3181
ORF1ab/nsp3154E154XE972XnonsynGaaTaa333313179-3181
ORF1ab/nsp3154E154delE972deldelGAA---323213179-3181
ORF1ab/nsp3154E154QE972QnonsynGaaCaa161613179-3181
ORF1ab/nsp3154E154del1E972del1delgaAga-210.53179-3181
ORF1ab/nsp3154E154del1E972del1delGaa-aa210.53179-3181

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3154E154KGaaAaa545545All0.000104
ORF1ab/nsp3154E154AgAagCa211211All0.00004
ORF1ab/nsp3154E154GgAagGa155155All0.00003
ORF1ab/nsp3154E154EgaAgaG128128All0.000024
ORF1ab/nsp3154E154KGaaAaa120120B.1.1.700.040928
ORF1ab/nsp3154E154DgaAgaC60105All0.000011
ORF1ab/nsp3154E154DgaAgaT45105All0.000009
ORF1ab/nsp3154E154AgAagCa9696AD.20.02102
ORF1ab/nsp3154E154KGaaAaa6262A.161
ORF1ab/nsp3154E154KGaaAaa5454B.1.1.70.000048
ORF1ab/nsp3154E154KGaaAaa5050AY.39.10.001981
ORF1ab/nsp3154E154VgAagTa3847All0.000007
ORF1ab/nsp3154E154VgAAgTT947All0.000002
ORF1ab/nsp3154E154GgAagGa4646B.1.4600.821429
ORF1ab/nsp3154E154AgAagCa3636B.1.1.70.000032
ORF1ab/nsp3154E154XGaaTaa3333All0.000006
ORF1ab/nsp3154E154delGAA---3232All0.000006
ORF1ab/nsp3154E154DgaAgaC2329B.1.1.70.000021
ORF1ab/nsp3154E154DgaAgaT629B.1.1.70.000005
ORF1ab/nsp3154E154KGaaAaa2727AY.40.000042
ORF1ab/nsp3154E154GgAagGa2424B.1.1.70.000021
ORF1ab/nsp3154E154KGaaAaa2424P.10.000378
ORF1ab/nsp3154E154DgaAgaT1521AY.1030.000093
ORF1ab/nsp3154E154DgaAgaC621AY.1030.000037
ORF1ab/nsp3154E154EgaAgaG2121B.1.1.2140.001165
ORF1ab/nsp3154E154GgAagGa2020AY.50.000413
ORF1ab/nsp3154E154KGaaAaa1818B.1.360.002626
ORF1ab/nsp3154E154EgaAgaG1717B.1.5950.004436
ORF1ab/nsp3154E154QGaaCaa1616All0.000003
ORF1ab/nsp3154E154EgaAgaG1616B.1.1.70.000014
ORF1ab/nsp3154E154KGaaAaa1616B.1.20.000141
ORF1ab/nsp3154E154EgaAgaG1515AY.40.000023
ORF1ab/nsp3154E154XGaaTaa1414D.20.001051
ORF1ab/nsp3154E154KGaaAaa1313AY.1030.000081
ORF1ab/nsp3154E154EgaAgaG1212AY.5.40.00332
ORF1ab/nsp3154E154KGaaAaa1212B.1.617.20.000045
ORF1ab/nsp3154E154KGaaAaa1111AY.260.000311
ORF1ab/nsp3154E154KGaaAaa1111B.1.1.5190.000437
ORF1ab/nsp3154E154GgAagGa1010AY.40.000016
ORF1ab/nsp3154E154AgAagCa1010AY.420.000402
ORF1ab/nsp3154E154KGaaAaa1010AY.430.000044
ORF1ab/nsp3154E154VgAagTa910B.1.1.70.000008
ORF1ab/nsp3154E154VgAAgTT110B.1.1.70.000001
ORF1ab/nsp3154E154AgAagCa1010B.1.617.20.000038
ORF1ab/nsp3154E154KGaaAaa99B.10.000082
ORF1ab/nsp3154E154GgAagGa88P.10.000126
ORF1ab/nsp3154E154AgAagCa77AY.300.00277
ORF1ab/nsp3154E154AgAagCa77AY.440.000043
ORF1ab/nsp3154E154VgAagTa47B.10.000037
ORF1ab/nsp3154E154VgAAgTT37B.10.000027
ORF1ab/nsp3154E154KGaaAaa66AY.1020.000159
ORF1ab/nsp3154E154VgAagTa66AY.250.000036
ORF1ab/nsp3154E154GgAagGa66AY.290.000095
ORF1ab/nsp3154E154KGaaAaa66AY.420.000241
ORF1ab/nsp3154E154KGaaAaa66B.1.10.000109
ORF1ab/nsp3154E154KGaaAaa66B.1.1.1210.014563
ORF1ab/nsp3154E154DgaAgaC66B.1.5260.000141
ORF1ab/nsp3154E154delGAA---66B.1.617.20.000023
ORF1ab/nsp3154E154KGaaAaa55AE.80.002445
ORF1ab/nsp3154E154EgaAgaG55AY.1030.000031
ORF1ab/nsp3154E154KGaaAaa55AY.30.00005
ORF1ab/nsp3154E154DgaAgaC55AY.460.00052
ORF1ab/nsp3154E154DgaAgaT55AY.730.003327
ORF1ab/nsp3154E154DgaAgaT55B.10.000046
ORF1ab/nsp3154E154AgAagCa55B.1.1.3150.042373
ORF1ab/nsp3154E154QGaaCaa55B.1.617.20.000019
ORF1ab/nsp3154E154AgAagCa44AY.1030.000025
ORF1ab/nsp3154E154KGaaAaa44AY.250.000024
ORF1ab/nsp3154E154DgaAgaT34AY.430.000013
ORF1ab/nsp3154E154DgaAgaC14AY.430.000004
ORF1ab/nsp3154E154KGaaAaa44AY.870.003331
ORF1ab/nsp3154E154EgaAgaG44B.10.000037
ORF1ab/nsp3154E154AgAagCa44B.10.000037
ORF1ab/nsp3154E154KGaaAaa44B.1.1.1630.030534
ORF1ab/nsp3154E154GgAagGa44B.1.1.5190.000159
ORF1ab/nsp3154E154delGAA---44B.1.1.70.000004
ORF1ab/nsp3154E154EgaAgaG44B.1.617.20.000015
ORF1ab/nsp3154E154QGaaCaa44D.20.0003
ORF1ab/nsp3154E154VgAagTa44P.10.000063
ORF1ab/nsp3154E154KGaaAaa33AY.1000.000138
ORF1ab/nsp3154E154KGaaAaa33AY.200.000117
ORF1ab/nsp3154E154DgaAgaC33AY.30.00003
ORF1ab/nsp3154E154AgAagCa33AY.390.000074
ORF1ab/nsp3154E154AgAagCa33AY.40.000005
ORF1ab/nsp3154E154GgAagGa33AY.430.000013
ORF1ab/nsp3154E154KGaaAaa33AY.440.000018
ORF1ab/nsp3154E154GgAagGa33AY.470.000093
ORF1ab/nsp3154E154VgAAgTT23B0.000256
ORF1ab/nsp3154E154VgAagTa13B0.000128
ORF1ab/nsp3154E154delGAA---33B.10.000027
ORF1ab/nsp3154E154delGAA---33B.1.1.330.001263
ORF1ab/nsp3154E154KGaaAaa33B.1.1.3850.013393
ORF1ab/nsp3154E154VgAagTa23B.1.20.000018
ORF1ab/nsp3154E154VgAAgTT13B.1.20.000009
ORF1ab/nsp3154E154KGaaAaa33B.1.3110.000824
ORF1ab/nsp3154E154AgAagCa33B.1.3400.012876
ORF1ab/nsp3154E154KGaaAaa33B.1.3510.000089
ORF1ab/nsp3154E154KGaaAaa33B.1.4270.000151
ORF1ab/nsp3154E154DgaAgaT23B.1.617.20.000008
ORF1ab/nsp3154E154VgAagTa23B.1.617.20.000008
ORF1ab/nsp3154E154DgaAgaC13B.1.617.20.000004
ORF1ab/nsp3154E154VgAAgTT13B.1.617.20.000004
ORF1ab/nsp3154E154GgAagGa33P.20.00056
ORF1ab/nsp3154E154del1gaAga-12All0
ORF1ab/nsp3154E154del1Gaa-aa12All0
ORF1ab/nsp3154E154delGAA---22AY.1020.000053
ORF1ab/nsp3154E154GgAagGa22AY.1130.000285
ORF1ab/nsp3154E154AgAagCa22AY.250.000012
ORF1ab/nsp3154E154EgaAgaG22AY.290.000032
ORF1ab/nsp3154E154DgaAgaC22AY.40.000003
ORF1ab/nsp3154E154AgAagCa22AY.430.000009
ORF1ab/nsp3154E154QGaaCaa22AY.440.000012
ORF1ab/nsp3154E154KGaaAaa22AY.450.000243
ORF1ab/nsp3154E154EgaAgaG22AY.750.000112
ORF1ab/nsp3154E154VgAAgTT12AY.750.000056
ORF1ab/nsp3154E154VgAagTa12AY.750.000056
ORF1ab/nsp3154E154EgaAgaG22AY.98.10.000097
ORF1ab/nsp3154E154EgaAgaG22B.1.10.000036
ORF1ab/nsp3154E154XGaaTaa22B.1.10.000036
ORF1ab/nsp3154E154AgAagCa22B.1.10.000036
ORF1ab/nsp3154E154GgAagGa22B.1.10.000036
ORF1ab/nsp3154E154EgaAgaG22B.1.1.2220.000408
ORF1ab/nsp3154E154EgaAgaG22B.1.1.2940.002532
ORF1ab/nsp3154E154KGaaAaa22B.1.1.3170.000823
ORF1ab/nsp3154E154delGAA---22B.1.1.3480.001592
ORF1ab/nsp3154E154EgaAgaG22B.1.1.3480.001592
ORF1ab/nsp3154E154XGaaTaa22B.1.1.70.000002
ORF1ab/nsp3154E154EgaAgaG22B.1.1600.000062
ORF1ab/nsp3154E154GgAagGa22B.1.177.40.000422
ORF1ab/nsp3154E154DgaAgaT22B.1.2210.000142
ORF1ab/nsp3154E154XGaaTaa22B.1.2430.000139
ORF1ab/nsp3154E154GgAagGa22B.1.258.170.000208
ORF1ab/nsp3154E154KGaaAaa22B.1.2650.002541
ORF1ab/nsp3154E154EgaAgaG22B.1.36.310.003503
ORF1ab/nsp3154E154VgAagTa22B.1.3980.005952
ORF1ab/nsp3154E154DgaAgaC22B.1.5690.028986
ORF1ab/nsp3154E154EgaAgaG22B.1.617.10.000258
ORF1ab/nsp3154E154GgAagGa22B.1.617.20.000008
ORF1ab/nsp3154E154GgAagGa22B.1.6370.000146
ORF1ab/nsp3154E154KGaaAaa22D.20.00015
ORF1ab/nsp3154E154delGAA---22N.60.014184
ORF1ab/nsp3154E154KGaaAaa11A0.000387
ORF1ab/nsp3154E154XGaaTaa11A0.000387
ORF1ab/nsp3154E154XGaaTaa11A.20.000662
ORF1ab/nsp3154E154GgAagGa11A.2.20.001689
ORF1ab/nsp3154E154delGAA---11AY.1030.000006
ORF1ab/nsp3154E154DgaAgaC11AY.1140.000231
ORF1ab/nsp3154E154KGaaAaa11AY.1140.000231
ORF1ab/nsp3154E154KGaaAaa11AY.116.10.000311
ORF1ab/nsp3154E154KGaaAaa11AY.1190.000035
ORF1ab/nsp3154E154AgAagCa11AY.1190.000035
ORF1ab/nsp3154E154GgAagGa11AY.1200.000037
ORF1ab/nsp3154E154delGAA---11AY.1200.000037
ORF1ab/nsp3154E154KGaaAaa11AY.120.10.000321
ORF1ab/nsp3154E154AgAagCa11AY.120.2.10.000498
ORF1ab/nsp3154E154KGaaAaa11AY.160.00038
ORF1ab/nsp3154E154EgaAgaG11AY.200.000039
ORF1ab/nsp3154E154DgaAgaT11AY.230.00007
ORF1ab/nsp3154E154VgAagTa11AY.260.000028
ORF1ab/nsp3154E154EgaAgaG11AY.260.000028
ORF1ab/nsp3154E154AgAagCa11AY.290.000016
ORF1ab/nsp3154E154AgAagCa11AY.29.10.000221
ORF1ab/nsp3154E154GgAagGa11AY.30.00001
ORF1ab/nsp3154E154GgAagGa11AY.330.000067
ORF1ab/nsp3154E154AgAagCa11AY.360.000148
ORF1ab/nsp3154E154EgaAgaG11AY.390.000025
ORF1ab/nsp3154E154KGaaAaa11AY.390.000025
ORF1ab/nsp3154E154delGAA---11AY.40.000002
ORF1ab/nsp3154E154VgAagTa11AY.40.000002
ORF1ab/nsp3154E154GgAagGa11AY.4.20.000022
ORF1ab/nsp3154E154EgaAgaG11AY.4.30.000842
ORF1ab/nsp3154E154QGaaCaa11AY.430.000004
ORF1ab/nsp3154E154EgaAgaG11AY.430.000004
ORF1ab/nsp3154E154EgaAgaG11AY.440.000006
ORF1ab/nsp3154E154XGaaTaa11AY.440.000006
ORF1ab/nsp3154E154VgAagTa11AY.46.40.000165
ORF1ab/nsp3154E154DgaAgaC11AY.46.50.000198
ORF1ab/nsp3154E154KGaaAaa11AY.46.60.000072
ORF1ab/nsp3154E154XGaaTaa11AY.50.000021
ORF1ab/nsp3154E154DgaAgaT11AY.540.000095
ORF1ab/nsp3154E154KGaaAaa11AY.60.000041
ORF1ab/nsp3154E154delGAA---11AY.610.000105
ORF1ab/nsp3154E154GgAagGa11AY.650.000533
ORF1ab/nsp3154E154KGaaAaa11AY.7.20.000559
ORF1ab/nsp3154E154EgaAgaG11AY.710.000475
ORF1ab/nsp3154E154KGaaAaa11AY.750.000056
ORF1ab/nsp3154E154DgaAgaT11AY.750.000056
ORF1ab/nsp3154E154delGAA---11AY.90.000068
ORF1ab/nsp3154E154KGaaAaa11AY.9.20.000037
ORF1ab/nsp3154E154AgAagCa11AY.9.20.000037
ORF1ab/nsp3154E154GgAagGa11AY.9.20.000037
ORF1ab/nsp3154E154DgaAgaT11B0.000128
ORF1ab/nsp3154E154GgAagGa11B.10.000009
ORF1ab/nsp3154E154XGaaTaa11B.10.000009
ORF1ab/nsp3154E154QGaaCaa11B.10.000009
ORF1ab/nsp3154E154QGaaCaa11B.1.10.000018
ORF1ab/nsp3154E154delGAA---11B.1.10.000018
ORF1ab/nsp3154E154DgaAgaC11B.1.10.000018
ORF1ab/nsp3154E154XGaaTaa11B.1.1.1480.008772
ORF1ab/nsp3154E154KGaaAaa11B.1.1.1610.003534
ORF1ab/nsp3154E154KGaaAaa11B.1.1.2140.000055
ORF1ab/nsp3154E154AgAagCa11B.1.1.2220.000204
ORF1ab/nsp3154E154DgaAgaT11B.1.1.2550.00303
ORF1ab/nsp3154E154XGaaTaa11B.1.1.2750.011236
ORF1ab/nsp3154E154delGAA---11B.1.1.2840.000107
ORF1ab/nsp3154E154EgaAgaG11B.1.1.3060.000438
ORF1ab/nsp3154E154KGaaAaa11B.1.1.3110.000358
ORF1ab/nsp3154E154XGaaTaa11B.1.1.3110.000358
ORF1ab/nsp3154E154GgAagGa11B.1.1.3320.03125
ORF1ab/nsp3154E154XGaaTaa11B.1.1.3720.000689
ORF1ab/nsp3154E154XGaaTaa11B.1.1.390.00051
ORF1ab/nsp3154E154VgAagTa11B.1.1.390.00051
ORF1ab/nsp3154E154AgAagCa11B.1.1.5170.006803
ORF1ab/nsp3154E154EgaAgaG11B.1.1.5190.00004
ORF1ab/nsp3154E154DgaAgaC11B.1.1.630.000386
ORF1ab/nsp3154E154del1gaAga-11B.1.1.70.000001
ORF1ab/nsp3154E154KGaaAaa11B.1.110.30.000718
ORF1ab/nsp3154E154KGaaAaa11B.1.1390.000733
ORF1ab/nsp3154E154AgAagCa11B.1.1400.018868
ORF1ab/nsp3154E154KGaaAaa11B.1.1600.000031
ORF1ab/nsp3154E154XGaaTaa11B.1.160.160.000929
ORF1ab/nsp3154E154DgaAgaC11B.1.1770.000013
ORF1ab/nsp3154E154GgAagGa11B.1.1770.000013
ORF1ab/nsp3154E154KGaaAaa11B.1.177.180.00116
ORF1ab/nsp3154E154XGaaTaa11B.1.177.420.000894
ORF1ab/nsp3154E154KGaaAaa11B.1.177.690.001484
ORF1ab/nsp3154E154KGaaAaa11B.1.177.810.000189
ORF1ab/nsp3154E154AgAagCa11B.1.20.000009
ORF1ab/nsp3154E154DgaAgaT11B.1.20.000009
ORF1ab/nsp3154E154XGaaTaa11B.1.20.000009
ORF1ab/nsp3154E154GgAagGa11B.1.20.000009
ORF1ab/nsp3154E154EgaAgaG11B.1.20.000009
ORF1ab/nsp3154E154KGaaAaa11B.1.2340.000132
ORF1ab/nsp3154E154AgAagCa11B.1.2430.00007
ORF1ab/nsp3154E154GgAagGa11B.1.258.110.000396
ORF1ab/nsp3154E154DgaAgaC11B.1.2980.002114
ORF1ab/nsp3154E154delGAA---11B.1.3510.00003
ORF1ab/nsp3154E154GgAagGa11B.1.3510.00003
ORF1ab/nsp3154E154QGaaCaa11B.1.3510.00003
ORF1ab/nsp3154E154DgaAgaC11B.1.36.290.000517
ORF1ab/nsp3154E154VgAagTa11B.1.3670.000792
ORF1ab/nsp3154E154KGaaAaa11B.1.3710.001122
ORF1ab/nsp3154E154KGaaAaa11B.1.4090.000781
ORF1ab/nsp3154E154del1Gaa-aa11B.1.4270.00005
ORF1ab/nsp3154E154delGAA---11B.1.4290.000024
ORF1ab/nsp3154E154EgaAgaG11B.1.4290.000024
ORF1ab/nsp3154E154DgaAgaC11B.1.4290.000024
ORF1ab/nsp3154E154AgAagCa11B.1.466.20.000391
ORF1ab/nsp3154E154GgAagGa11B.1.5260.000024
ORF1ab/nsp3154E154GgAagGa11B.1.5410.004425
ORF1ab/nsp3154E154delGAA---11B.1.5610.000397
ORF1ab/nsp3154E154AgAagCa11B.1.5750.000303
ORF1ab/nsp3154E154EgaAgaG11B.1.5960.000087
ORF1ab/nsp3154E154KGaaAaa11B.1.6090.000479
ORF1ab/nsp3154E154DgaAgaC11B.1.617.10.000129
ORF1ab/nsp3154E154VgAagTa11B.1.6210.000089
ORF1ab/nsp3154E154KGaaAaa11B.1.6360.006711
ORF1ab/nsp3154E154AgAagCa11B.60.00091
ORF1ab/nsp3154E154KGaaAaa11C.360.000911
ORF1ab/nsp3154E154DgaAgaT11C.36.30.000567
ORF1ab/nsp3154E154AgAagCa11D.20.000075
ORF1ab/nsp3154E154GgAagGa11D.20.000075
ORF1ab/nsp3154E154EgaAgaG11P.10.000016
ORF1ab/nsp3154E154VgAagTa11P.1.140.000048
ORF1ab/nsp3154E154EgaAgaG11P.1.150.000232
ORF1ab/nsp3154E154AgAagCa11P.1.150.000232
ORF1ab/nsp3154E154KGaaAaa11P.1.150.000232
ORF1ab/nsp3154E154QGaaCaa11P.1.150.000232
ORF1ab/nsp3154E154DgaAgaC11P.1.160.000374
ORF1ab/nsp3154E154AgAagCa11P.1.70.000319
ORF1ab/nsp3154E154KGaaAaa11P.20.000187
ORF1ab/nsp3154E154KGaaAaa11Q.10.000126
ORF1ab/nsp3154E154KGaaAaa11Q.30.000145
ORF1ab/nsp3154E154KGaaAaa11Q.40.000455
ORF1ab/nsp3154E154DgaAgaC11Q.80.000165
ORF1ab/nsp3154E154KGaaAaa11Q.80.000165