CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1538

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1538	V1538A	V2356A	nonsyn	gTa	gCa	198	198	1	7331-7333
ORF1ab/nsp3	1538	V1538V	V2356V	syn	gtA	gtG	169	158	0.934911	7331-7333
ORF1ab/nsp3	1538	V1538V	V2356V	syn	gtA	gtT	169	6	0.035503	7331-7333
ORF1ab/nsp3	1538	V1538V	V2356V	syn	gtA	gtC	169	5	0.0295858	7331-7333
ORF1ab/nsp3	1538	V1538I	V2356I	nonsyn	Gta	Ata	166	165	0.993976	7331-7333
ORF1ab/nsp3	1538	V1538I	V2356I	nonsyn	GtA	AtT	166	1	0.0060241	7331-7333
ORF1ab/nsp3	1538	V1538del	V2356del	del	GTA	---	84	84	1	7331-7333
ORF1ab/nsp3	1538	V1538L	V2356L	nonsyn	Gta	Tta	81	77	0.950617	7331-7333
ORF1ab/nsp3	1538	V1538L	V2356L	nonsyn	Gta	Cta	81	4	0.0493827	7331-7333
ORF1ab/nsp3	1538	V1538G	V2356G	nonsyn	gTa	gGa	9	7	0.777778	7331-7333
ORF1ab/nsp3	1538	V1538G	V2356G	nonsyn	gTA	gGT	9	2	0.222222	7331-7333
ORF1ab/nsp3	1538	V1538E	V2356E	nonsyn	gTa	gAa	4	4	1	7331-7333
ORF1ab/nsp3	1538	V1538del1	V2356del1	del	gtA	gt-	4	3	0.75	7331-7333
ORF1ab/nsp3	1538	V1538del1	V2356del1	del	Gta	-ta	4	1	0.25	7331-7333
ORF1ab/nsp3	1538	V1538T	V2356T	nonsyn	GTa	ACa	3	3	1	7331-7333
ORF1ab/nsp3	1538	V1538X	V2356X	nonsyn	GTa	TGa	3	3	1	7331-7333
ORF1ab/nsp3	1538	V1538S	V2356S	nonsyn	GTA	AGT	3	2	0.666667	7331-7333
ORF1ab/nsp3	1538	V1538F	V2356F	nonsyn	GtA	TtT	3	2	0.666667	7331-7333
ORF1ab/nsp3	1538	V1538S	V2356S	nonsyn	GTa	TCa	3	1	0.333333	7331-7333
ORF1ab/nsp3	1538	V1538F	V2356F	nonsyn	GtA	TtC	3	1	0.333333	7331-7333
ORF1ab/nsp3	1538	V1538C	V2356C	nonsyn	GTA	TGT	2	2	1	7331-7333
ORF1ab/nsp3	1538	V1538R	V2356R	nonsyn	GTa	AGa	1	1	1	7331-7333
ORF1ab/nsp3	1538	V1538del2	V2356del2	del	GTA	--N	1	1	1	7331-7333
ORF1ab/nsp3	1538	V1538Q	V2356Q	nonsyn	GTa	CAa	1	1	1	7331-7333

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1538	V1538A	gTa	gCa	198	198	All	0.000038
ORF1ab/nsp3	1538	V1538V	gtA	gtG	158	169	All	0.00003
ORF1ab/nsp3	1538	V1538V	gtA	gtT	6	169	All	0.000001
ORF1ab/nsp3	1538	V1538V	gtA	gtC	5	169	All	0.000001
ORF1ab/nsp3	1538	V1538I	Gta	Ata	165	166	All	0.000032
ORF1ab/nsp3	1538	V1538I	GtA	AtT	1	166	All	0
ORF1ab/nsp3	1538	V1538A	gTa	gCa	90	90	B.1.355	1
ORF1ab/nsp3	1538	V1538del	GTA	---	84	84	All	0.000016
ORF1ab/nsp3	1538	V1538L	Gta	Tta	77	81	All	0.000015
ORF1ab/nsp3	1538	V1538L	Gta	Cta	4	81	All	0.000001
ORF1ab/nsp3	1538	V1538V	gtA	gtG	41	41	B.1.1.7	0.000037
ORF1ab/nsp3	1538	V1538I	Gta	Ata	39	39	B.1.497	0.012276
ORF1ab/nsp3	1538	V1538I	Gta	Ata	34	34	AY.3	0.000338
ORF1ab/nsp3	1538	V1538V	gtA	gtG	29	29	B.1.334	0.527273
ORF1ab/nsp3	1538	V1538I	Gta	Ata	24	24	B.1.1.7	0.000021
ORF1ab/nsp3	1538	V1538del	GTA	---	21	21	B.1.1.7	0.000019
ORF1ab/nsp3	1538	V1538A	gTa	gCa	20	20	AY.44	0.000122
ORF1ab/nsp3	1538	V1538I	Gta	Ata	16	16	AY.4	0.000025
ORF1ab/nsp3	1538	V1538A	gTa	gCa	16	16	B.1.596	0.001394
ORF1ab/nsp3	1538	V1538A	gTa	gCa	12	12	B.1.1.486	0.018927
ORF1ab/nsp3	1538	V1538V	gtA	gtG	11	11	AY.103	0.000068
ORF1ab/nsp3	1538	V1538L	Gta	Tta	11	11	AY.4	0.000017
ORF1ab/nsp3	1538	V1538V	gtA	gtG	11	11	AY.44	0.000067
ORF1ab/nsp3	1538	V1538I	Gta	Ata	11	11	B.1.526	0.000259
ORF1ab/nsp3	1538	V1538G	gTa	gGa	7	9	All	0.000001
ORF1ab/nsp3	1538	V1538G	gTA	gGT	2	9	All	0
ORF1ab/nsp3	1538	V1538L	Gta	Tta	9	9	AY.103	0.000056
ORF1ab/nsp3	1538	V1538del	GTA	---	8	8	AY.43	0.000035
ORF1ab/nsp3	1538	V1538V	gtA	gtG	8	8	AY.45	0.000973
ORF1ab/nsp3	1538	V1538L	Gta	Tta	7	8	B.1.617.2	0.000026
ORF1ab/nsp3	1538	V1538L	Gta	Cta	1	8	B.1.617.2	0.000004
ORF1ab/nsp3	1538	V1538V	gtA	gtG	7	7	AY.26	0.000198
ORF1ab/nsp3	1538	V1538I	Gta	Ata	7	7	AY.26	0.000198
ORF1ab/nsp3	1538	V1538V	gtA	gtG	7	7	AY.4	0.000011
ORF1ab/nsp3	1538	V1538I	Gta	Ata	7	7	B.1	0.000064
ORF1ab/nsp3	1538	V1538A	gTa	gCa	7	7	B.1.177.81	0.001325
ORF1ab/nsp3	1538	V1538del	GTA	---	7	7	B.1.617.2	0.000026
ORF1ab/nsp3	1538	V1538V	gtA	gtT	4	6		0.222222
ORF1ab/nsp3	1538	V1538V	gtA	gtC	2	6		0.111111
ORF1ab/nsp3	1538	V1538V	gtA	gtG	5	6	AY.3	0.00005
ORF1ab/nsp3	1538	V1538V	gtA	gtC	1	6	AY.3	0.00001
ORF1ab/nsp3	1538	V1538A	gTa	gCa	6	6	AY.4	0.000009
ORF1ab/nsp3	1538	V1538L	Gta	Tta	5	5	AY.25	0.00003
ORF1ab/nsp3	1538	V1538A	gTa	gCa	5	5	B.1	0.000046
ORF1ab/nsp3	1538	V1538V	gtA	gtG	5	5	B.1.1.326	0.008803
ORF1ab/nsp3	1538	V1538A	gTa	gCa	5	5	B.1.1.7	0.000004
ORF1ab/nsp3	1538	V1538I	Gta	Ata	5	5	B.1.617.2	0.000019
ORF1ab/nsp3	1538	V1538G	gTa	gGa	2	4		0.111111
ORF1ab/nsp3	1538	V1538G	gTA	gGT	2	4		0.111111
ORF1ab/nsp3	1538	V1538E	gTa	gAa	4	4	All	0.000001
ORF1ab/nsp3	1538	V1538del1	gtA	gt-	3	4	All	0.000001
ORF1ab/nsp3	1538	V1538del1	Gta	-ta	1	4	All	0
ORF1ab/nsp3	1538	V1538A	gTa	gCa	4	4	AY.25	0.000024
ORF1ab/nsp3	1538	V1538A	gTa	gCa	4	4	AY.4.2	0.000087
ORF1ab/nsp3	1538	V1538L	Gta	Tta	4	4	AY.98	0.000316
ORF1ab/nsp3	1538	V1538del	GTA	---	4	4	B.1	0.000037
ORF1ab/nsp3	1538	V1538V	gtA	gtG	3	4	B.1	0.000027
ORF1ab/nsp3	1538	V1538V	gtA	gtC	1	4	B.1	0.000009
ORF1ab/nsp3	1538	V1538V	gtA	gtG	4	4	B.1.1.519	0.000159
ORF1ab/nsp3	1538	V1538L	Gta	Tta	4	4	B.1.177.12	0.000607
ORF1ab/nsp3	1538	V1538L	Gta	Tta	3	3		0.166667
ORF1ab/nsp3	1538	V1538I	Gta	Ata	2	3		0.111111
ORF1ab/nsp3	1538	V1538I	GtA	AtT	1	3		0.055556
ORF1ab/nsp3	1538	V1538T	GTa	ACa	3	3	All	0.000001
ORF1ab/nsp3	1538	V1538X	GTa	TGa	3	3	All	0.000001
ORF1ab/nsp3	1538	V1538S	GTA	AGT	2	3	All	0
ORF1ab/nsp3	1538	V1538F	GtA	TtT	2	3	All	0
ORF1ab/nsp3	1538	V1538S	GTa	TCa	1	3	All	0
ORF1ab/nsp3	1538	V1538F	GtA	TtC	1	3	All	0
ORF1ab/nsp3	1538	V1538I	Gta	Ata	3	3	AY.119	0.000106
ORF1ab/nsp3	1538	V1538del	GTA	---	3	3	AY.42	0.000121
ORF1ab/nsp3	1538	V1538I	Gta	Ata	3	3	AY.44	0.000018
ORF1ab/nsp3	1538	V1538L	Gta	Tta	3	3	AY.54	0.000286
ORF1ab/nsp3	1538	V1538G	gTa	gGa	3	3	B.1	0.000027
ORF1ab/nsp3	1538	V1538del	GTA	---	3	3	B.1.1	0.000054
ORF1ab/nsp3	1538	V1538L	Gta	Tta	3	3	B.1.1.7	0.000003
ORF1ab/nsp3	1538	V1538V	gtA	gtG	3	3	B.1.2	0.000026
ORF1ab/nsp3	1538	V1538A	gTa	gCa	3	3	B.1.526	0.000071
ORF1ab/nsp3	1538	V1538V	gtA	gtG	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1538	V1538L	Gta	Tta	3	3	P.1	0.000047
ORF1ab/nsp3	1538	V1538X	GTa	TGa	2	2		0.111111
ORF1ab/nsp3	1538	V1538C	GTA	TGT	2	2		0.111111
ORF1ab/nsp3	1538	V1538F	GtA	TtT	2	2		0.111111
ORF1ab/nsp3	1538	V1538S	GTA	AGT	1	2		0.055556
ORF1ab/nsp3	1538	V1538S	GTa	TCa	1	2		0.055556
ORF1ab/nsp3	1538	V1538C	GTA	TGT	2	2	All	0
ORF1ab/nsp3	1538	V1538I	Gta	Ata	2	2	AY.103	0.000012
ORF1ab/nsp3	1538	V1538A	gTa	gCa	2	2	AY.114	0.000462
ORF1ab/nsp3	1538	V1538V	gtA	gtG	2	2	AY.117	0.000169
ORF1ab/nsp3	1538	V1538A	gTa	gCa	2	2	AY.118	0.000125
ORF1ab/nsp3	1538	V1538del	GTA	---	2	2	AY.120.2	0.002571
ORF1ab/nsp3	1538	V1538del	GTA	---	2	2	AY.25	0.000012
ORF1ab/nsp3	1538	V1538V	gtA	gtG	2	2	AY.33	0.000134
ORF1ab/nsp3	1538	V1538A	gTa	gCa	2	2	AY.39	0.000049
ORF1ab/nsp3	1538	V1538V	gtA	gtG	2	2	AY.39	0.000049
ORF1ab/nsp3	1538	V1538L	Gta	Tta	2	2	AY.43	0.000009
ORF1ab/nsp3	1538	V1538L	Gta	Tta	2	2	AY.5	0.000041
ORF1ab/nsp3	1538	V1538L	Gta	Tta	2	2	AY.69	0.000373
ORF1ab/nsp3	1538	V1538V	gtA	gtG	2	2	B.1.1.306	0.000877
ORF1ab/nsp3	1538	V1538L	Gta	Tta	2	2	B.1.1.519	0.000079
ORF1ab/nsp3	1538	V1538L	Gta	Tta	2	2	B.1.2	0.000018
ORF1ab/nsp3	1538	V1538del	GTA	---	2	2	B.1.2	0.000018
ORF1ab/nsp3	1538	V1538E	gTa	gAa	2	2	B.1.221	0.000142
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	2	B.1.221	0.000071
ORF1ab/nsp3	1538	V1538V	gtA	gtC	1	2	B.1.221	0.000071
ORF1ab/nsp3	1538	V1538del	GTA	---	2	2	B.1.497	0.00063
ORF1ab/nsp3	1538	V1538V	gtA	gtT	2	2	B.1.517	0.000854
ORF1ab/nsp3	1538	V1538T	GTa	ACa	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1538	V1538A	gTa	gCa	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1538	V1538A	gTa	gCa	2	2	P.1	0.000032
ORF1ab/nsp3	1538	V1538R	GTa	AGa	1	1		0.055556
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1		0.055556
ORF1ab/nsp3	1538	V1538del2	GTA	--N	1	1	All	0
ORF1ab/nsp3	1538	V1538Q	GTa	CAa	1	1	All	0
ORF1ab/nsp3	1538	V1538R	GTa	AGa	1	1	All	0
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	AY.100	0.000046
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.103	0.000006
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.113	0.000142
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	AY.119	0.000035
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.13	0.000161
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.25	0.000006
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	AY.29	0.000016
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	AY.3	0.00001
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.33	0.000067
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.33	0.000067
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	AY.33	0.000067
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.39	0.000025
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.4	0.000002
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.4.5	0.000107
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	AY.42	0.00004
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	AY.43	0.000004
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	AY.43	0.000004
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	AY.44	0.000006
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.44	0.000006
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.46.5	0.000198
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	AY.5	0.000021
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.5	0.000021
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	AY.5	0.000021
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.66	0.00107
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.75	0.000056
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.9	0.000068
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B	0.000128
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B	0.000128
ORF1ab/nsp3	1538	V1538E	gTa	gAa	1	1	B.1	0.000009
ORF1ab/nsp3	1538	V1538L	Gta	Cta	1	1	B.1	0.000009
ORF1ab/nsp3	1538	V1538G	gTa	gGa	1	1	B.1.1	0.000018
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.1	0.000018
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.1.176	0.000439
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	B.1.1.216	0.00089
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.1.221	0.010101
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.1.241	0.00207
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1538	V1538del1	gtA	gt-	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.1.354	0.004386
ORF1ab/nsp3	1538	V1538L	Gta	Cta	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1538	V1538S	GTA	AGT	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1538	V1538E	gTa	gAa	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1538	V1538F	GtA	TtC	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1538	V1538del1	Gta	-ta	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.115	0.021739
ORF1ab/nsp3	1538	V1538X	GTa	TGa	1	1	B.1.160	0.000031
ORF1ab/nsp3	1538	V1538G	gTa	gGa	1	1	B.1.160	0.000031
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	B.1.160	0.000031
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.161	0.017241
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.177	0.000013
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	B.1.177	0.000013
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.177	0.000013
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	B.1.2	0.000009
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.2	0.000009
ORF1ab/nsp3	1538	V1538Q	GTa	CAa	1	1	B.1.221	0.000071
ORF1ab/nsp3	1538	V1538L	Gta	Cta	1	1	B.1.221	0.000071
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	B.1.221	0.000071
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.234	0.000132
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	B.1.234	0.000132
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	B.1.243	0.00007
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	B.1.243	0.00007
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.258	0.000067
ORF1ab/nsp3	1538	V1538del1	gtA	gt-	1	1	B.1.326	0.007576
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.351	0.00003
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.351	0.00003
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.36	0.000146
ORF1ab/nsp3	1538	V1538del1	gtA	gt-	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.369	0.000285
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	B.1.413	0.004255
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.434	0.052632
ORF1ab/nsp3	1538	V1538I	Gta	Ata	1	1	B.1.459	0.004082
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.525	0.000113
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.537	0.02
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.538	0.008065
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.575.1	0.002439
ORF1ab/nsp3	1538	V1538del2	GTA	--N	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.617.1	0.000129
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	B.1.621	0.000089
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	B.1.621	0.000089
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	B.1.637	0.000073
ORF1ab/nsp3	1538	V1538T	GTa	ACa	1	1	C.35	0.000774
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	C.36.3.1	0.002717
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	D.2	0.000075
ORF1ab/nsp3	1538	V1538A	gTa	gCa	1	1	D.2	0.000075
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	P.1	0.000016
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	P.1	0.000016
ORF1ab/nsp3	1538	V1538V	gtA	gtG	1	1	P.1.14	0.000048
ORF1ab/nsp3	1538	V1538L	Gta	Tta	1	1	P.1.15	0.000232
ORF1ab/nsp3	1538	V1538del	GTA	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.