CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 153 & Codon = Act

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3153P153TP971TnonsynCctAct747413176-3178

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3153P153TCctAct7474All0.000014
ORF1ab/nsp3153P153TCctAct1616B.1.258.190.113475
ORF1ab/nsp3153P153TCctAct1010B.1.10.000181
ORF1ab/nsp3153P153TCctAct77AY.40.000011
ORF1ab/nsp3153P153TCctAct77B.1.1.70.000006
ORF1ab/nsp3153P153TCctAct44AY.250.000024
ORF1ab/nsp3153P153TCctAct44AY.430.000018
ORF1ab/nsp3153P153TCctAct44B.1.20.000035
ORF1ab/nsp3153P153TCctAct33A.290.015957
ORF1ab/nsp3153P153TCctAct22AY.1030.000012
ORF1ab/nsp3153P153TCctAct22AY.3.10.000171
ORF1ab/nsp3153P153TCctAct22B.1.1.280.000622
ORF1ab/nsp3153P153TCctAct22B.1.1.3180.000604
ORF1ab/nsp3153P153TCctAct22B.1.3510.000059
ORF1ab/nsp3153P153TCctAct11AY.1190.000035
ORF1ab/nsp3153P153TCctAct11AY.290.000016
ORF1ab/nsp3153P153TCctAct11AY.440.000006
ORF1ab/nsp3153P153TCctAct11AY.9.10.000084
ORF1ab/nsp3153P153TCctAct11B.1.1.10.000327
ORF1ab/nsp3153P153TCctAct11B.1.1.2660.012195
ORF1ab/nsp3153P153TCctAct11B.1.2430.00007
ORF1ab/nsp3153P153TCctAct11B.1.351.10.038462
ORF1ab/nsp3153P153TCctAct11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.