CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1528 & Codon = atT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31528I1528II2346IsynatCatT558354430.9749247301-7303

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31528I1528IatCatT54435583All0.001041
ORF1ab/nsp31528I1528IatCatT16101610B.1.20.014177
ORF1ab/nsp31528I1528IatCatT10911091B.1.3670.864501
ORF1ab/nsp31528I1528IatCatT429432B.1.1.70.000384
ORF1ab/nsp31528I1528IatCatT209210AY.40.000325
ORF1ab/nsp31528I1528IatCatT206207B.1.617.20.000776
ORF1ab/nsp31528I1528IatCatT51157B.1.1600.001591
ORF1ab/nsp31528I1528IatCatT151151B.1.1.5190.005996
ORF1ab/nsp31528I1528IatCatT143147B.10.00131
ORF1ab/nsp31528I1528IatCatT125125B.1.1.4060.811688
ORF1ab/nsp31528I1528IatCatT123124AY.1030.000764
ORF1ab/nsp31528I1528IatCatT106106B.1.3510.003151
ORF1ab/nsp31528I1528IatCatT9999B.1.10.001796
ORF1ab/nsp31528I1528IatCatT7273AY.610.007544
ORF1ab/nsp31528I1528IatCatT5555B.1.1770.000724
ORF1ab/nsp31528I1528IatCatT4040P.10.00063
ORF1ab/nsp31528I1528IatCatT3838AY.430.000168
ORF1ab/nsp31528I1528IatCatT3337AY.30.000328
ORF1ab/nsp31528I1528IatCatT3636AY.1200.001338
ORF1ab/nsp31528I1528IatCatT3336AY.200.001283
ORF1ab/nsp31528I1528IatCatT3536AY.250.000211
ORF1ab/nsp31528I1528IatCatT3536AY.440.000213
ORF1ab/nsp31528I1528IatCatT3131B.1.4290.000729
ORF1ab/nsp31528I1528IatCatT2626B.1.177.600.005679
ORF1ab/nsp31528I1528IatCatT2121AY.75.10.003787
ORF1ab/nsp31528I1528IatCatT1919AY.29.10.00419
ORF1ab/nsp31528I1528IatCatT1818AY.5.40.004981
ORF1ab/nsp31528I1528IatCatT1717AY.260.000481
ORF1ab/nsp31528I1528IatCatT1717B.1.1.3090.099415
ORF1ab/nsp31528I1528IatCatT1616AY.9.20.000588
ORF1ab/nsp31528I1528IatCatT1616B.1.2580.001065
ORF1ab/nsp31528I1528IatCatT1616B.1.3110.004393
ORF1ab/nsp31528I1528IatCatT1616B.1.5960.001394
ORF1ab/nsp31528I1528IatCatT1616R.10.00144
ORF1ab/nsp31528I1528IatCatT1515AY.46.60.001083
ORF1ab/nsp31528I1528IatCatT1414AY.4.50.001505
ORF1ab/nsp31528I1528IatCatT1414B.1.177.40.002955
ORF1ab/nsp31528I1528IatCatT1414B.1.4970.004407
ORF1ab/nsp31528I1528IatCatT1414B.1.6210.001239
ORF1ab/nsp31528I1528IatCatT1313AY.98.10.00063
ORF1ab/nsp31528I1528IatCatT1212AY.380.005991
ORF1ab/nsp31528I1528IatCatT512AY.390.000124
ORF1ab/nsp31528I1528IatCatT1212AY.50.000248
ORF1ab/nsp31528I1528IatCatT1111AY.4.20.000239
ORF1ab/nsp31528I1528IatCatT79AY.1020.000186
ORF1ab/nsp31528I1528IatCatT99B0.00115
ORF1ab/nsp31528I1528IatCatT99B.1.5260.000212
ORF1ab/nsp31528I1528IatCatT78AY.1190.000247
ORF1ab/nsp31528I1528IatCatT77AY.1000.000322
ORF1ab/nsp31528I1528IatCatT77AY.1140.001618
ORF1ab/nsp31528I1528IatCatT77AY.470.000218
ORF1ab/nsp31528I1528IatCatT77B.1.2400.001509
ORF1ab/nsp31528I1528IatCatT77B.1.360.001021
ORF1ab/nsp31528I1528IatCatT77B.1.5610.002779
ORF1ab/nsp31528I1528IatCatT77P.1.140.000335
ORF1ab/nsp31528I1528IatCatT66AY.1130.000854
ORF1ab/nsp31528I1528IatCatT66AY.270.000388
ORF1ab/nsp31528I1528IatCatT66AY.290.000095
ORF1ab/nsp31528I1528IatCatT66AY.420.000241
ORF1ab/nsp31528I1528IatCatT66AY.540.000572
ORF1ab/nsp31528I1528IatCatT66AY.950.004566
ORF1ab/nsp31528I1528IatCatT66B.1.1.2410.012422
ORF1ab/nsp31528I1528IatCatT66B.1.1.3510.01676
ORF1ab/nsp31528I1528IatCatT66B.1.2430.000418
ORF1ab/nsp31528I1528IatCatT66B.1.6300.031414
ORF1ab/nsp31528I1528IatCatT55AY.1090.003698
ORF1ab/nsp31528I1528IatCatT55AY.710.002375
ORF1ab/nsp31528I1528IatCatT55B.1.1.10.001633
ORF1ab/nsp31528I1528IatCatT55B.1.258.170.00052
ORF1ab/nsp31528I1528IatCatT55B.1.5640.002129
ORF1ab/nsp31528I1528IatCatT55B.1.6250.011765
ORF1ab/nsp31528I1528IatCatT44AY.7.10.000451
ORF1ab/nsp31528I1528IatCatT44B.1.3690.001141
ORF1ab/nsp31528I1528IatCatT44B.1.4690.01444
ORF1ab/nsp31528I1528IatCatT44D.20.0003
ORF1ab/nsp31528I1528IatCatT44P.1.70.001277
ORF1ab/nsp31528I1528IatCatT44Q.30.00058
ORF1ab/nsp31528I1528IatCatT33A.210.00831
ORF1ab/nsp31528I1528IatCatT33AY.1040.005952
ORF1ab/nsp31528I1528IatCatT33AY.1180.000188
ORF1ab/nsp31528I1528IatCatT33AY.130.000483
ORF1ab/nsp31528I1528IatCatT33AY.3.10.000256
ORF1ab/nsp31528I1528IatCatT33AY.750.000168
ORF1ab/nsp31528I1528IatCatT33AY.830.005172
ORF1ab/nsp31528I1528IatCatT33B.1.1.1920.006928
ORF1ab/nsp31528I1528IatCatT33B.1.1.2140.000166
ORF1ab/nsp31528I1528IatCatT33B.1.1.2160.002671
ORF1ab/nsp31528I1528IatCatT33B.1.1.3170.001235
ORF1ab/nsp31528I1528IatCatT33B.1.1.3330.003229
ORF1ab/nsp31528I1528IatCatT33B.1.36.290.001552
ORF1ab/nsp31528I1528IatCatT33B.1.617.10.000387
ORF1ab/nsp31528I1528IatCatT33B.6.60.002667
ORF1ab/nsp31528I1528IatCatT33C.140.012987
ORF1ab/nsp31528I1528IatCatT33C.370.000348
ORF1ab/nsp31528I1528IatCatT23P.1.150.000465
ORF1ab/nsp31528I1528IatCatT33P.20.00056
ORF1ab/nsp31528I1528IatCatT22AE.30.064516
ORF1ab/nsp31528I1528IatCatT22AY.100.00106
ORF1ab/nsp31528I1528IatCatT22AY.1170.000169
ORF1ab/nsp31528I1528IatCatT22AY.140.000176
ORF1ab/nsp31528I1528IatCatT12AY.230.00007
ORF1ab/nsp31528I1528IatCatT22AY.320.001065
ORF1ab/nsp31528I1528IatCatT22AY.340.000194
ORF1ab/nsp31528I1528IatCatT22AY.410.000588
ORF1ab/nsp31528I1528IatCatT22AY.450.000243
ORF1ab/nsp31528I1528IatCatT22AY.460.000208
ORF1ab/nsp31528I1528IatCatT22AY.5.30.000675
ORF1ab/nsp31528I1528IatCatT22AY.550.001835
ORF1ab/nsp31528I1528IatCatT22AY.690.000373
ORF1ab/nsp31528I1528IatCatT22AY.740.000231
ORF1ab/nsp31528I1528IatCatT22AY.780.003082
ORF1ab/nsp31528I1528IatCatT22B.1.1.1170.019417
ORF1ab/nsp31528I1528IatCatT22B.1.1.370.000386
ORF1ab/nsp31528I1528IatCatT22B.1.1.3720.001377
ORF1ab/nsp31528I1528IatCatT22B.1.1.4340.000697
ORF1ab/nsp31528I1528IatCatT22B.1.177.870.001456
ORF1ab/nsp31528I1528IatCatT22B.1.2100.004264
ORF1ab/nsp31528I1528IatCatT22B.1.2340.000264
ORF1ab/nsp31528I1528IatCatT22B.1.351.20.000605
ORF1ab/nsp31528I1528IatCatT22B.1.36.170.000988
ORF1ab/nsp31528I1528IatCatT22B.1.4700.002809
ORF1ab/nsp31528I1528IatCatT22C.350.001548
ORF1ab/nsp31528I1528IatCatT110.055556
ORF1ab/nsp31528I1528IatCatT11A.190.009434
ORF1ab/nsp31528I1528IatCatT11A.2.50.000499
ORF1ab/nsp31528I1528IatCatT11A.270.001656
ORF1ab/nsp31528I1528IatCatT11AW.10.003049
ORF1ab/nsp31528I1528IatCatT11AY.1100.000113
ORF1ab/nsp31528I1528IatCatT11AY.1210.000135
ORF1ab/nsp31528I1528IatCatT11AY.240.000431
ORF1ab/nsp31528I1528IatCatT11AY.300.000396
ORF1ab/nsp31528I1528IatCatT11AY.330.000067
ORF1ab/nsp31528I1528IatCatT11AY.39.10.00004
ORF1ab/nsp31528I1528IatCatT11AY.4.2.10.000149
ORF1ab/nsp31528I1528IatCatT11AY.4.30.000842
ORF1ab/nsp31528I1528IatCatT11AY.46.20.000635
ORF1ab/nsp31528I1528IatCatT11AY.510.000909
ORF1ab/nsp31528I1528IatCatT11AY.600.000938
ORF1ab/nsp31528I1528IatCatT11AY.630.000387
ORF1ab/nsp31528I1528IatCatT11AY.670.000464
ORF1ab/nsp31528I1528IatCatT11AY.70.000196
ORF1ab/nsp31528I1528IatCatT11AY.7.20.000559
ORF1ab/nsp31528I1528IatCatT11AY.90.000068
ORF1ab/nsp31528I1528IatCatT11AY.940.000443
ORF1ab/nsp31528I1528IatCatT11AY.980.000079
ORF1ab/nsp31528I1528IatCatT11AY.99.20.000092
ORF1ab/nsp31528I1528IatCatT11B.1.1.1280.007092
ORF1ab/nsp31528I1528IatCatT11B.1.1.1380.006061
ORF1ab/nsp31528I1528IatCatT11B.1.1.1720.018182
ORF1ab/nsp31528I1528IatCatT11B.1.1.1890.001513
ORF1ab/nsp31528I1528IatCatT11B.1.1.2070.001182
ORF1ab/nsp31528I1528IatCatT11B.1.1.250.000569
ORF1ab/nsp31528I1528IatCatT11B.1.1.2700.010309
ORF1ab/nsp31528I1528IatCatT11B.1.1.2770.000759
ORF1ab/nsp31528I1528IatCatT11B.1.1.280.000311
ORF1ab/nsp31528I1528IatCatT11B.1.1.2840.000107
ORF1ab/nsp31528I1528IatCatT11B.1.1.3480.000796
ORF1ab/nsp31528I1528IatCatT11B.1.1.5070.008696
ORF1ab/nsp31528I1528IatCatT11B.1.1.5260.003546
ORF1ab/nsp31528I1528IatCatT11B.1.1.830.00271
ORF1ab/nsp31528I1528IatCatT11B.1.1270.002198
ORF1ab/nsp31528I1528IatCatT11B.1.1280.000635
ORF1ab/nsp31528I1528IatCatT11B.1.1460.004237
ORF1ab/nsp31528I1528IatCatT11B.1.160.70.002079
ORF1ab/nsp31528I1528IatCatT11B.1.177.210.000076
ORF1ab/nsp31528I1528IatCatT11B.1.177.440.000519
ORF1ab/nsp31528I1528IatCatT11B.1.177.450.000381
ORF1ab/nsp31528I1528IatCatT11B.1.177.860.000183
ORF1ab/nsp31528I1528IatCatT11B.1.2060.000816
ORF1ab/nsp31528I1528IatCatT11B.1.2210.000071
ORF1ab/nsp31528I1528IatCatT11B.1.258.140.00098
ORF1ab/nsp31528I1528IatCatT11B.1.2650.001271
ORF1ab/nsp31528I1528IatCatT11B.1.3750.00082
ORF1ab/nsp31528I1528IatCatT11B.1.3970.004854
ORF1ab/nsp31528I1528IatCatT11B.1.4090.000781
ORF1ab/nsp31528I1528IatCatT11B.1.5300.007143
ORF1ab/nsp31528I1528IatCatT11B.1.5760.000907
ORF1ab/nsp31528I1528IatCatT11B.1.5810.009434
ORF1ab/nsp31528I1528IatCatT11B.1.5820.000491
ORF1ab/nsp31528I1528IatCatT11B.1.5970.00463
ORF1ab/nsp31528I1528IatCatT11B.1.6040.017241
ORF1ab/nsp31528I1528IatCatT11B.1.6120.002653
ORF1ab/nsp31528I1528IatCatT11B.1.6200.000946
ORF1ab/nsp31528I1528IatCatT11B.600.015873
ORF1ab/nsp31528I1528IatCatT11C.36.10.004149
ORF1ab/nsp31528I1528IatCatT11K.10.02381
ORF1ab/nsp31528I1528IatCatT11P.1.10.000318
ORF1ab/nsp31528I1528IatCatT11P.1.120.000484
ORF1ab/nsp31528I1528IatCatT11P.1.170.000162
ORF1ab/nsp31528I1528IatCatT11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.